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Search of human proteins with 24497551
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|24497551 homeobox A10 isoform b [Homo sapiens]
(94 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24497551 homeobox A10 isoform b [Homo sapiens] 196 4e-51
gi|182765442 homeobox A10 isoform a [Homo sapiens] 188 7e-49
gi|24497533 homeobox C10 [Homo sapiens] 164 1e-41
gi|23510366 homeobox D10 [Homo sapiens] 160 2e-40
gi|23097236 homeobox A9 [Homo sapiens] 124 1e-29
gi|15029508 homeobox B9 [Homo sapiens] 124 2e-29
gi|24497547 homeobox C9 [Homo sapiens] 124 2e-29
gi|194363768 homeobox D9 [Homo sapiens] 122 6e-29
gi|23510368 homeobox D11 [Homo sapiens] 105 1e-23
gi|5031759 homeobox A11 [Homo sapiens] 100 3e-22
gi|7657166 homeobox C11 [Homo sapiens] 95 1e-20
gi|13273317 homeobox B8 [Homo sapiens] 90 3e-19
gi|12056969 homeobox C8 [Homo sapiens] 90 4e-19
gi|4504469 homeobox B5 [Homo sapiens] 90 4e-19
gi|15029506 homeobox D8 [Homo sapiens] 89 1e-18
gi|13489077 homeobox A6 [Homo sapiens] 88 1e-18
gi|23503237 homeobox B6 [Homo sapiens] 87 2e-18
gi|24497517 homeobox A5 [Homo sapiens] 86 5e-18
gi|11321638 homeobox C5 [Homo sapiens] 84 2e-17
gi|24497556 homeobox A7 [Homo sapiens] 84 2e-17
gi|85068580 homeobox B7 [Homo sapiens] 84 2e-17
gi|24497544 homeobox C6 isoform 2 [Homo sapiens] 81 2e-16
gi|4758554 homeobox C6 isoform 1 [Homo sapiens] 81 2e-16
gi|24497538 homeobox C4 [Homo sapiens] 81 2e-16
gi|24497540 homeobox C4 [Homo sapiens] 81 2e-16
gi|23397672 homeobox D4 [Homo sapiens] 80 4e-16
gi|148613882 homeobox A4 [Homo sapiens] 80 4e-16
gi|27804315 homeobox C12 [Homo sapiens] 79 8e-16
gi|13375632 homeobox D1 [Homo sapiens] 78 1e-15
gi|13273315 homeobox B4 [Homo sapiens] 78 1e-15
>gi|24497551 homeobox A10 isoform b [Homo sapiens]
Length = 94
Score = 196 bits (497), Expect = 4e-51
Identities = 94/94 (100%), Positives = 94/94 (100%)
Query: 1 MCQGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLT 60
MCQGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLT
Sbjct: 1 MCQGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLT 60
Query: 61 DRQVKIWFQNRRMKLKKMNRENRIRELTANFNFS 94
DRQVKIWFQNRRMKLKKMNRENRIRELTANFNFS
Sbjct: 61 DRQVKIWFQNRRMKLKKMNRENRIRELTANFNFS 94
>gi|182765442 homeobox A10 isoform a [Homo sapiens]
Length = 410
Score = 188 bits (478), Expect = 7e-49
Identities = 91/91 (100%), Positives = 91/91 (100%)
Query: 4 GNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQ 63
GNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQ
Sbjct: 320 GNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQ 379
Query: 64 VKIWFQNRRMKLKKMNRENRIRELTANFNFS 94
VKIWFQNRRMKLKKMNRENRIRELTANFNFS
Sbjct: 380 VKIWFQNRRMKLKKMNRENRIRELTANFNFS 410
>gi|24497533 homeobox C10 [Homo sapiens]
Length = 342
Score = 164 bits (416), Expect = 1e-41
Identities = 79/89 (88%), Positives = 85/89 (95%), Gaps = 1/89 (1%)
Query: 7 KGENAA-NWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVK 65
K EN NWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEIS++++LTDRQVK
Sbjct: 254 KAENTTGNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVK 313
Query: 66 IWFQNRRMKLKKMNRENRIRELTANFNFS 94
IWFQNRRMKLKKMNRENRIRELT+NFNF+
Sbjct: 314 IWFQNRRMKLKKMNRENRIRELTSNFNFT 342
>gi|23510366 homeobox D10 [Homo sapiens]
Length = 340
Score = 160 bits (406), Expect = 2e-40
Identities = 77/83 (92%), Positives = 81/83 (97%)
Query: 12 ANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNR 71
+NWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEIS+SV+LTDRQVKIWFQNR
Sbjct: 258 SNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNR 317
Query: 72 RMKLKKMNRENRIRELTANFNFS 94
RMKLKKM+RENRIRELTAN FS
Sbjct: 318 RMKLKKMSRENRIRELTANLTFS 340
>gi|23097236 homeobox A9 [Homo sapiens]
Length = 272
Score = 124 bits (312), Expect = 1e-29
Identities = 56/71 (78%), Positives = 67/71 (94%)
Query: 11 AANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQN 70
AANWL A+S RKKRCPYTKHQTLELEKEFLFNMYLTR+RR E++R ++LT+RQVKIWFQN
Sbjct: 197 AANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQN 256
Query: 71 RRMKLKKMNRE 81
RRMK+KK+N++
Sbjct: 257 RRMKMKKINKD 267
>gi|15029508 homeobox B9 [Homo sapiens]
Length = 250
Score = 124 bits (310), Expect = 2e-29
Identities = 58/87 (66%), Positives = 73/87 (83%), Gaps = 6/87 (6%)
Query: 1 MCQGNSKGEN------AANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEIS 54
+C+G+ E +ANWL A+S RKKRCPYTK+QTLELEKEFLFNMYLTR+RR E++
Sbjct: 160 ICEGSEDKERPDQTNPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVA 219
Query: 55 RSVHLTDRQVKIWFQNRRMKLKKMNRE 81
R ++L++RQVKIWFQNRRMK+KKMN+E
Sbjct: 220 RLLNLSERQVKIWFQNRRMKMKKMNKE 246
>gi|24497547 homeobox C9 [Homo sapiens]
Length = 260
Score = 124 bits (310), Expect = 2e-29
Identities = 56/75 (74%), Positives = 68/75 (90%)
Query: 12 ANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNR 71
ANW+ A+S RKKRCPYTK+QTLELEKEFLFNMYLTR+RR E++R ++LT+RQVKIWFQNR
Sbjct: 184 ANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNR 243
Query: 72 RMKLKKMNRENRIRE 86
RMK+KKMN+E +E
Sbjct: 244 RMKMKKMNKEKTDKE 258
>gi|194363768 homeobox D9 [Homo sapiens]
Length = 352
Score = 122 bits (306), Expect = 6e-29
Identities = 55/71 (77%), Positives = 67/71 (94%)
Query: 11 AANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQN 70
AANW+ A+S RKKRCPYTK+QTLELEKEFLFNMYLTR+RR E++R ++LT+RQVKIWFQN
Sbjct: 276 AANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQN 335
Query: 71 RRMKLKKMNRE 81
RRMK+KKM++E
Sbjct: 336 RRMKMKKMSKE 346
>gi|23510368 homeobox D11 [Homo sapiens]
Length = 338
Score = 105 bits (261), Expect = 1e-23
Identities = 48/87 (55%), Positives = 68/87 (78%), Gaps = 1/87 (1%)
Query: 4 GNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQ 63
G + E +++ + + RKKRCPYTK+Q ELE+EF FN+Y+ +E+RL++SR ++LTDRQ
Sbjct: 250 GEAGAEKSSSAVAPQRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQ 309
Query: 64 VKIWFQNRRMKLKKMNRENRIRELTAN 90
VKIWFQNRRMK KK+NR+ R++ T N
Sbjct: 310 VKIWFQNRRMKEKKLNRD-RLQYFTGN 335
>gi|5031759 homeobox A11 [Homo sapiens]
Length = 313
Score = 100 bits (248), Expect = 3e-22
Identities = 47/82 (57%), Positives = 66/82 (80%), Gaps = 1/82 (1%)
Query: 9 ENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWF 68
E+ A + + RKKRCPYTK+Q ELE+EF F++Y+ +E+RL++SR ++LTDRQVKIWF
Sbjct: 230 EDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWF 289
Query: 69 QNRRMKLKKMNRENRIRELTAN 90
QNRRMK KK+NR+ R++ +AN
Sbjct: 290 QNRRMKEKKINRD-RLQYYSAN 310
>gi|7657166 homeobox C11 [Homo sapiens]
Length = 304
Score = 95.1 bits (235), Expect = 1e-20
Identities = 43/70 (61%), Positives = 59/70 (84%), Gaps = 1/70 (1%)
Query: 21 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNR 80
RKKRCPY+K Q ELE+EF FN+Y+ +E+RL++SR ++LTDRQVKIWFQNRRMK KK++R
Sbjct: 233 RKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLSR 292
Query: 81 ENRIRELTAN 90
+ R++ + N
Sbjct: 293 D-RLQYFSGN 301
>gi|13273317 homeobox B8 [Homo sapiens]
Length = 243
Score = 90.1 bits (222), Expect = 3e-19
Identities = 43/68 (63%), Positives = 58/68 (85%), Gaps = 1/68 (1%)
Query: 17 AKSGRKK-RCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKL 75
A +GR++ R Y+++QTLELEKEFLFN YLTR+RR+E+S ++ LT+RQVKIWFQNRRMK
Sbjct: 142 AAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKW 201
Query: 76 KKMNRENR 83
KK N +++
Sbjct: 202 KKENNKDK 209
>gi|12056969 homeobox C8 [Homo sapiens]
Length = 242
Score = 89.7 bits (221), Expect = 4e-19
Identities = 42/68 (61%), Positives = 55/68 (80%)
Query: 17 AKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLK 76
A R R Y+++QTLELEKEFLFN YLTR+RR+E+S ++ LT+RQVKIWFQNRRMK K
Sbjct: 146 APGRRSGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWK 205
Query: 77 KMNRENRI 84
K N ++++
Sbjct: 206 KENNKDKL 213
>gi|4504469 homeobox B5 [Homo sapiens]
Length = 269
Score = 89.7 bits (221), Expect = 4e-19
Identities = 43/79 (54%), Positives = 57/79 (72%)
Query: 15 LTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMK 74
+T G++ R YT++QTLELEKEF FN YLTR RR+EI+ ++ L++RQ+KIWFQNRRMK
Sbjct: 189 MTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMK 248
Query: 75 LKKMNRENRIRELTANFNF 93
KK N+ + TA F
Sbjct: 249 WKKDNKLKSMSLATAGSAF 267
>gi|15029506 homeobox D8 [Homo sapiens]
Length = 290
Score = 88.6 bits (218), Expect = 1e-18
Identities = 42/67 (62%), Positives = 54/67 (80%)
Query: 17 AKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLK 76
A R+ R Y++ QTLELEKEFLFN YLTR+RR+E+S ++ LT+RQVKIWFQNRRMK K
Sbjct: 194 APGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQVKIWFQNRRMKWK 253
Query: 77 KMNRENR 83
K N +++
Sbjct: 254 KENNKDK 260
>gi|13489077 homeobox A6 [Homo sapiens]
Length = 233
Score = 88.2 bits (217), Expect = 1e-18
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 20 GRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMN 79
GR+ R YT++QTLELEKEF FN YLTR RR+EI+ ++ LT+RQ+KIWFQNRRMK KK N
Sbjct: 155 GRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKEN 214
Query: 80 R 80
+
Sbjct: 215 K 215
>gi|23503237 homeobox B6 [Homo sapiens]
Length = 224
Score = 87.4 bits (215), Expect = 2e-18
Identities = 42/71 (59%), Positives = 56/71 (78%)
Query: 19 SGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKM 78
SGR+ R YT++QTLELEKEF +N YLTR RR+EI+ ++ LT+RQ+KIWFQNRRMK KK
Sbjct: 145 SGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 204
Query: 79 NRENRIRELTA 89
++ +L+A
Sbjct: 205 SKLLSASQLSA 215
>gi|24497517 homeobox A5 [Homo sapiens]
Length = 270
Score = 86.3 bits (212), Expect = 5e-18
Identities = 39/61 (63%), Positives = 51/61 (83%)
Query: 20 GRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMN 79
G++ R YT++QTLELEKEF FN YLTR RR+EI+ ++ L++RQ+KIWFQNRRMK KK N
Sbjct: 195 GKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDN 254
Query: 80 R 80
+
Sbjct: 255 K 255
>gi|11321638 homeobox C5 [Homo sapiens]
Length = 222
Score = 84.3 bits (207), Expect = 2e-17
Identities = 38/58 (65%), Positives = 48/58 (82%)
Query: 20 GRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 77
G++ R YT++QTLELEKEF FN YLTR RR+EI+ ++ L +RQ+KIWFQNRRMK KK
Sbjct: 155 GKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKK 212
>gi|24497556 homeobox A7 [Homo sapiens]
Length = 230
Score = 84.0 bits (206), Expect = 2e-17
Identities = 40/70 (57%), Positives = 54/70 (77%), Gaps = 2/70 (2%)
Query: 14 WLTAKSGRKKRC--PYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNR 71
W+ + +KR YT++QTLELEKEF FN YLTR RR+EI+ ++ LT+RQ+KIWFQNR
Sbjct: 122 WMRSSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNR 181
Query: 72 RMKLKKMNRE 81
RMK KK +++
Sbjct: 182 RMKWKKEHKD 191
>gi|85068580 homeobox B7 [Homo sapiens]
Length = 217
Score = 84.0 bits (206), Expect = 2e-17
Identities = 40/69 (57%), Positives = 53/69 (76%), Gaps = 2/69 (2%)
Query: 14 WLTAKSGRKKRC--PYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNR 71
W+ + +KR YT++QTLELEKEF +N YLTR RR+EI+ ++ LT+RQ+KIWFQNR
Sbjct: 129 WMRSSGTDRKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNR 188
Query: 72 RMKLKKMNR 80
RMK KK N+
Sbjct: 189 RMKWKKENK 197
>gi|24497544 homeobox C6 isoform 2 [Homo sapiens]
Length = 153
Score = 81.3 bits (199), Expect = 2e-16
Identities = 38/57 (66%), Positives = 48/57 (84%)
Query: 21 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 77
R+ R Y+++QTLELEKEF FN YLTR RR+EI+ ++ LT+RQ+KIWFQNRRMK KK
Sbjct: 60 RRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKK 116
>gi|4758554 homeobox C6 isoform 1 [Homo sapiens]
Length = 235
Score = 81.3 bits (199), Expect = 2e-16
Identities = 38/57 (66%), Positives = 48/57 (84%)
Query: 21 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 77
R+ R Y+++QTLELEKEF FN YLTR RR+EI+ ++ LT+RQ+KIWFQNRRMK KK
Sbjct: 142 RRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKK 198
>gi|24497538 homeobox C4 [Homo sapiens]
Length = 264
Score = 80.9 bits (198), Expect = 2e-16
Identities = 37/60 (61%), Positives = 48/60 (80%)
Query: 21 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNR 80
++ R YT+ Q LELEKEF +N YLTR RR+EI+ S+ L++RQ+KIWFQNRRMK KK +R
Sbjct: 157 KRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHR 216
>gi|24497540 homeobox C4 [Homo sapiens]
Length = 264
Score = 80.9 bits (198), Expect = 2e-16
Identities = 37/60 (61%), Positives = 48/60 (80%)
Query: 21 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNR 80
++ R YT+ Q LELEKEF +N YLTR RR+EI+ S+ L++RQ+KIWFQNRRMK KK +R
Sbjct: 157 KRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHR 216
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 80.1 bits (196), Expect = 4e-16
Identities = 37/62 (59%), Positives = 47/62 (75%)
Query: 16 TAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKL 75
T ++ R YT+ Q LELEKEF FN YLTR RR+EI+ ++ L++RQ+KIWFQNRRMK
Sbjct: 150 TGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKW 209
Query: 76 KK 77
KK
Sbjct: 210 KK 211
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 80.1 bits (196), Expect = 4e-16
Identities = 37/57 (64%), Positives = 46/57 (80%)
Query: 21 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 77
++ R YT+ Q LELEKEF FN YLTR RR+EI+ ++ L++RQVKIWFQNRRMK KK
Sbjct: 216 KRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKK 272
>gi|27804315 homeobox C12 [Homo sapiens]
Length = 282
Score = 79.0 bits (193), Expect = 8e-16
Identities = 40/76 (52%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 4 GNSKGENAANWLTAKS-GRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDR 62
G + A W S RKKR PY+K Q ELE EFL N ++TR+RR E+S ++L+D+
Sbjct: 197 GGGLSASGAPWYPINSRSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQ 256
Query: 63 QVKIWFQNRRMKLKKM 78
QVKIWFQNRRMK K++
Sbjct: 257 QVKIWFQNRRMKKKRL 272
>gi|13375632 homeobox D1 [Homo sapiens]
Length = 328
Score = 78.2 bits (191), Expect = 1e-15
Identities = 41/76 (53%), Positives = 47/76 (61%)
Query: 6 SKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVK 65
SK A + A R ++ Q ELEKEF FN YLTR RR+EI+ +HL D QVK
Sbjct: 215 SKKGKLAEYGAASPSSAIRTNFSTKQLTELEKEFHFNKYLTRARRIEIANCLHLNDTQVK 274
Query: 66 IWFQNRRMKLKKMNRE 81
IWFQNRRMK KK RE
Sbjct: 275 IWFQNRRMKQKKRERE 290
>gi|13273315 homeobox B4 [Homo sapiens]
Length = 251
Score = 78.2 bits (191), Expect = 1e-15
Identities = 35/57 (61%), Positives = 46/57 (80%)
Query: 21 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 77
++ R YT+ Q LELEKEF +N YLTR RR+EI+ ++ L++RQ+KIWFQNRRMK KK
Sbjct: 163 KRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKK 219
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.131 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,202,795
Number of Sequences: 37866
Number of extensions: 112004
Number of successful extensions: 680
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 364
Number of HSP's gapped (non-prelim): 325
length of query: 94
length of database: 18,247,518
effective HSP length: 65
effective length of query: 29
effective length of database: 15,786,228
effective search space: 457800612
effective search space used: 457800612
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.