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Search of human proteins with 24497544
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|24497544 homeobox C6 isoform 2 [Homo sapiens]
(153 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24497544 homeobox C6 isoform 2 [Homo sapiens] 314 2e-86
gi|4758554 homeobox C6 isoform 1 [Homo sapiens] 314 2e-86
gi|13489077 homeobox A6 [Homo sapiens] 156 6e-39
gi|23503237 homeobox B6 [Homo sapiens] 154 4e-38
gi|24497556 homeobox A7 [Homo sapiens] 139 1e-33
gi|24497517 homeobox A5 [Homo sapiens] 137 5e-33
gi|85068580 homeobox B7 [Homo sapiens] 134 3e-32
gi|4504469 homeobox B5 [Homo sapiens] 128 2e-30
gi|12056969 homeobox C8 [Homo sapiens] 127 5e-30
gi|11321638 homeobox C5 [Homo sapiens] 125 2e-29
gi|13273315 homeobox B4 [Homo sapiens] 120 5e-28
gi|23397672 homeobox D4 [Homo sapiens] 118 2e-27
gi|148613882 homeobox A4 [Homo sapiens] 117 3e-27
gi|24497538 homeobox C4 [Homo sapiens] 115 1e-26
gi|24497540 homeobox C4 [Homo sapiens] 115 1e-26
gi|13273317 homeobox B8 [Homo sapiens] 115 1e-26
gi|15029506 homeobox D8 [Homo sapiens] 113 7e-26
gi|24497513 homeobox A3 isoform a [Homo sapiens] 98 3e-21
gi|13562112 homeobox A3 isoform a [Homo sapiens] 98 3e-21
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens] 97 7e-21
gi|24497515 homeobox A3 isoform b [Homo sapiens] 94 6e-20
gi|84570137 homeobox B3 [Homo sapiens] 93 8e-20
gi|10140847 homeobox A2 [Homo sapiens] 93 1e-19
gi|19923391 homeobox D3 [Homo sapiens] 92 2e-19
gi|89257348 homeo box HB9 [Homo sapiens] 85 2e-17
gi|194363768 homeobox D9 [Homo sapiens] 85 3e-17
gi|24497547 homeobox C9 [Homo sapiens] 84 4e-17
gi|4504465 homeobox B2 [Homo sapiens] 84 4e-17
gi|23510366 homeobox D10 [Homo sapiens] 82 2e-16
gi|23097236 homeobox A9 [Homo sapiens] 82 2e-16
>gi|24497544 homeobox C6 isoform 2 [Homo sapiens]
Length = 153
Score = 314 bits (804), Expect = 2e-86
Identities = 153/153 (100%), Positives = 153/153 (100%)
Query: 1 MLSNCRQNTLGHNTQTSIAQDFSSEQGRTAPQDQKASIQIYPWMQRMNSHSGVGYGADRR 60
MLSNCRQNTLGHNTQTSIAQDFSSEQGRTAPQDQKASIQIYPWMQRMNSHSGVGYGADRR
Sbjct: 1 MLSNCRQNTLGHNTQTSIAQDFSSEQGRTAPQDQKASIQIYPWMQRMNSHSGVGYGADRR 60
Query: 61 RGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESNL 120
RGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESNL
Sbjct: 61 RGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESNL 120
Query: 121 TSTLSGGGGGATADSLGGKEEKREETEEEKQKE 153
TSTLSGGGGGATADSLGGKEEKREETEEEKQKE
Sbjct: 121 TSTLSGGGGGATADSLGGKEEKREETEEEKQKE 153
>gi|4758554 homeobox C6 isoform 1 [Homo sapiens]
Length = 235
Score = 314 bits (804), Expect = 2e-86
Identities = 153/153 (100%), Positives = 153/153 (100%)
Query: 1 MLSNCRQNTLGHNTQTSIAQDFSSEQGRTAPQDQKASIQIYPWMQRMNSHSGVGYGADRR 60
MLSNCRQNTLGHNTQTSIAQDFSSEQGRTAPQDQKASIQIYPWMQRMNSHSGVGYGADRR
Sbjct: 83 MLSNCRQNTLGHNTQTSIAQDFSSEQGRTAPQDQKASIQIYPWMQRMNSHSGVGYGADRR 142
Query: 61 RGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESNL 120
RGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESNL
Sbjct: 143 RGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESNL 202
Query: 121 TSTLSGGGGGATADSLGGKEEKREETEEEKQKE 153
TSTLSGGGGGATADSLGGKEEKREETEEEKQKE
Sbjct: 203 TSTLSGGGGGATADSLGGKEEKREETEEEKQKE 235
>gi|13489077 homeobox A6 [Homo sapiens]
Length = 233
Score = 156 bits (395), Expect = 6e-39
Identities = 78/116 (67%), Positives = 89/116 (76%), Gaps = 3/116 (2%)
Query: 21 DFSSEQGRTAPQ---DQKASIQIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKE 77
D SS QG+ D+K + +YPWMQRMNS +G YG+ RRGRQ Y+RYQTLELEKE
Sbjct: 114 DSSSGQGKALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHGRRGRQTYTRYQTLELEKE 173
Query: 78 FHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATA 133
FHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKE+ L ++ G + A
Sbjct: 174 FHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEA 229
>gi|23503237 homeobox B6 [Homo sapiens]
Length = 224
Score = 154 bits (388), Expect = 4e-38
Identities = 81/133 (60%), Positives = 95/133 (71%), Gaps = 13/133 (9%)
Query: 15 QTSIAQDFSSEQGRTAPQDQKASIQIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLEL 74
++ AQD S G T ++QK S +YPWMQRMNS + +G RRGRQ Y+RYQTLEL
Sbjct: 105 KSDCAQD-KSVFGET--EEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLEL 161
Query: 75 EKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATAD 134
EKEFH+NRYLTRRRRIEIA+ALCLTERQIKIWFQNRRMKWKKES L S A
Sbjct: 162 EKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLS----------AS 211
Query: 135 SLGGKEEKREETE 147
L +EE+ ++ E
Sbjct: 212 QLSAEEEEEKQAE 224
>gi|24497556 homeobox A7 [Homo sapiens]
Length = 230
Score = 139 bits (349), Expect = 1e-33
Identities = 71/124 (57%), Positives = 86/124 (69%), Gaps = 13/124 (10%)
Query: 35 KASIQIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIAN 94
+A+ +IYPWM+ G DR+RGRQ Y+RYQTLELEKEFHFNRYLTRRRRIEIA+
Sbjct: 114 EANFRIYPWMRSS--------GPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAH 165
Query: 95 ALCLTERQIKIWFQNRRMKWKKE-----SNLTSTLSGGGGGATADSLGGKEEKREETEEE 149
ALCLTERQIKIWFQNRRMKWKKE + G A A + K ++ ++ EEE
Sbjct: 166 ALCLTERQIKIWFQNRRMKWKKEHKDEGPTAAAAPEGAVPSAAATAAADKADEEDDDEEE 225
Query: 150 KQKE 153
+ +E
Sbjct: 226 EDEE 229
>gi|24497517 homeobox A5 [Homo sapiens]
Length = 270
Score = 137 bits (344), Expect = 5e-33
Identities = 70/122 (57%), Positives = 86/122 (70%), Gaps = 3/122 (2%)
Query: 11 GHNTQTSIAQDFSSEQGRTAPQDQKASIQIYPWMQRMN-SHSGVGYGADRRRGRQIYSRY 69
G + + +S Q +P A QIYPWM++++ SH +G G + +R R Y+RY
Sbjct: 148 GAEEDAPASSEQASAQSEPSPAPP-AQPQIYPWMRKLHISHDNIG-GPEGKRARTAYTRY 205
Query: 70 QTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGG 129
QTLELEKEFHFNRYLTRRRRIEIA+ALCL+ERQIKIWFQNRRMKWKK++ L S G
Sbjct: 206 QTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAG 265
Query: 130 GA 131
GA
Sbjct: 266 GA 267
>gi|85068580 homeobox B7 [Homo sapiens]
Length = 217
Score = 134 bits (337), Expect = 3e-32
Identities = 69/127 (54%), Positives = 85/127 (66%), Gaps = 14/127 (11%)
Query: 19 AQDFSSEQGRTAPQDQKASIQIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEF 78
A+ +++ R + +++ +IYPWM+ G DR+RGRQ Y+RYQTLELEKEF
Sbjct: 105 AKAAGAKEQRDSDLAAESNFRIYPWMRSS--------GTDRKRGRQTYTRYQTLELEKEF 156
Query: 79 HFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADSLGG 138
H+NRYLTRRRRIEIA+ LCLTERQIKIWFQNRRMKWKKE+ G G T
Sbjct: 157 HYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKENKT------AGPGTTGQDRAE 210
Query: 139 KEEKREE 145
EE+ EE
Sbjct: 211 AEEEEEE 217
>gi|4504469 homeobox B5 [Homo sapiens]
Length = 269
Score = 128 bits (321), Expect = 2e-30
Identities = 66/103 (64%), Positives = 78/103 (75%), Gaps = 5/103 (4%)
Query: 30 APQDQKASIQIYPWMQRMN-SHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRR 88
AP+ Q QI+PWM++++ SH G D +R R Y+RYQTLELEKEFHFNRYLTRRR
Sbjct: 168 APEGQTP--QIFPWMRKLHISHDMTG--PDGKRARTAYTRYQTLELEKEFHFNRYLTRRR 223
Query: 89 RIEIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGA 131
RIEIA+ALCL+ERQIKIWFQNRRMKWKK++ L S G A
Sbjct: 224 RIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSLATAGSA 266
>gi|12056969 homeobox C8 [Homo sapiens]
Length = 242
Score = 127 bits (318), Expect = 5e-30
Identities = 70/156 (44%), Positives = 95/156 (60%), Gaps = 17/156 (10%)
Query: 6 RQNTLGHNTQTSIAQ--------DFSSEQGRTAPQDQKASIQIYPWMQRMNSHSGVGYGA 57
RQ+ G + S+ Q + +S +G+ + ++PWM+ +
Sbjct: 96 RQSLYGAQQEASVVQYPDCKSSANTNSSEGQGHLNQNSSPSLMFPWMRP--------HAP 147
Query: 58 DRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKE 117
RR GRQ YSRYQTLELEKEF FN YLTR+RRIE+++AL LTERQ+KIWFQNRRMKWKKE
Sbjct: 148 GRRSGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKE 207
Query: 118 SNLTSTLSGGGGGATADSLGGKEEKREETEEEKQKE 153
+N L G + G +EE++EE E+E+ K+
Sbjct: 208 NN-KDKLPGARDEEKVEEEGNEEEEKEEEEKEENKD 242
>gi|11321638 homeobox C5 [Homo sapiens]
Length = 222
Score = 125 bits (313), Expect = 2e-29
Identities = 59/84 (70%), Positives = 68/84 (80%), Gaps = 4/84 (4%)
Query: 39 QIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCL 98
QIYPWM +++ + + D +R R Y+RYQTLELEKEFHFNRYLTRRRRIEIAN LCL
Sbjct: 139 QIYPWMTKLH----MSHETDGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCL 194
Query: 99 TERQIKIWFQNRRMKWKKESNLTS 122
ERQIKIWFQNRRMKWKK+S + S
Sbjct: 195 NERQIKIWFQNRRMKWKKDSKMKS 218
>gi|13273315 homeobox B4 [Homo sapiens]
Length = 251
Score = 120 bits (301), Expect = 5e-28
Identities = 61/101 (60%), Positives = 75/101 (74%), Gaps = 4/101 (3%)
Query: 40 IYPWMQRMN-SHSGVGY-GADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALC 97
+YPWM++++ S Y G + +R R Y+R Q LELEKEFH+NRYLTRRRR+EIA+ALC
Sbjct: 141 VYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALC 200
Query: 98 LTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADSLGG 138
L+ERQIKIWFQNRRMKWKK+ L +T GG A S GG
Sbjct: 201 LSERQIKIWFQNRRMKWKKDHKLPNTKIRSGG--AAGSAGG 239
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 118 bits (296), Expect = 2e-27
Identities = 57/98 (58%), Positives = 73/98 (74%), Gaps = 2/98 (2%)
Query: 40 IYPWMQRMNSHS-GVGY-GADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALC 97
+YPWM++++ +S Y G + +R R Y+R Q LELEKEFHFNRYLTRRRRIEIA+ LC
Sbjct: 133 VYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLC 192
Query: 98 LTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADS 135
L+ERQIKIWFQNRRMKWKK+ L +T +++ S
Sbjct: 193 LSERQIKIWFQNRRMKWKKDHKLPNTKGRSSSSSSSSS 230
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 117 bits (294), Expect = 3e-27
Identities = 57/98 (58%), Positives = 72/98 (73%), Gaps = 2/98 (2%)
Query: 40 IYPWMQRMN-SHSGVGY-GADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALC 97
+YPWM++++ S Y G + +R R Y+R Q LELEKEFHFNRYLTRRRRIEIA+ LC
Sbjct: 194 VYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLC 253
Query: 98 LTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADS 135
L+ERQ+KIWFQNRRMKWKK+ L +T A+A +
Sbjct: 254 LSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASASA 291
>gi|24497538 homeobox C4 [Homo sapiens]
Length = 264
Score = 115 bits (289), Expect = 1e-26
Identities = 62/123 (50%), Positives = 81/123 (65%), Gaps = 10/123 (8%)
Query: 40 IYPWMQRMN-SHSGVGY-GADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALC 97
+YPWM++++ S Y G + +R R Y+R Q LELEKEFH+NRYLTRRRRIEIA++LC
Sbjct: 135 VYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLC 194
Query: 98 LTERQIKIWFQNRRMKWKKESNL--TSTLSGGGGGATADSLG------GKEEKREETEEE 149
L+ERQIKIWFQNRRMKWKK+ L T S GA +L ++ + T E
Sbjct: 195 LSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTSEDHSQSATPPE 254
Query: 150 KQK 152
+Q+
Sbjct: 255 QQR 257
>gi|24497540 homeobox C4 [Homo sapiens]
Length = 264
Score = 115 bits (289), Expect = 1e-26
Identities = 62/123 (50%), Positives = 81/123 (65%), Gaps = 10/123 (8%)
Query: 40 IYPWMQRMN-SHSGVGY-GADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALC 97
+YPWM++++ S Y G + +R R Y+R Q LELEKEFH+NRYLTRRRRIEIA++LC
Sbjct: 135 VYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLC 194
Query: 98 LTERQIKIWFQNRRMKWKKESNL--TSTLSGGGGGATADSLG------GKEEKREETEEE 149
L+ERQIKIWFQNRRMKWKK+ L T S GA +L ++ + T E
Sbjct: 195 LSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTSEDHSQSATPPE 254
Query: 150 KQK 152
+Q+
Sbjct: 255 QQR 257
>gi|13273317 homeobox B8 [Homo sapiens]
Length = 243
Score = 115 bits (289), Expect = 1e-26
Identities = 56/81 (69%), Positives = 66/81 (81%), Gaps = 7/81 (8%)
Query: 39 QIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCL 98
Q++PWM+ + A RRRGRQ YSRYQTLELEKEF FN YLTR+RRIE+++AL L
Sbjct: 133 QLFPWMRPQAA-------AGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGL 185
Query: 99 TERQIKIWFQNRRMKWKKESN 119
TERQ+KIWFQNRRMKWKKE+N
Sbjct: 186 TERQVKIWFQNRRMKWKKENN 206
>gi|15029506 homeobox D8 [Homo sapiens]
Length = 290
Score = 113 bits (282), Expect = 7e-26
Identities = 54/81 (66%), Positives = 65/81 (80%), Gaps = 7/81 (8%)
Query: 39 QIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCL 98
Q++PWM+ + RRRGRQ YSR+QTLELEKEF FN YLTR+RRIE+++AL L
Sbjct: 184 QMFPWMRPQAAPG-------RRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALAL 236
Query: 99 TERQIKIWFQNRRMKWKKESN 119
TERQ+KIWFQNRRMKWKKE+N
Sbjct: 237 TERQVKIWFQNRRMKWKKENN 257
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 97.8 bits (242), Expect = 3e-21
Identities = 54/114 (47%), Positives = 68/114 (59%), Gaps = 17/114 (14%)
Query: 39 QIYPWMQRM---------NSHSGVGYGADR--------RRGRQIYSRYQTLELEKEFHFN 81
QI+PWM+ +S SG D+ +R R Y+ Q +ELEKEFHFN
Sbjct: 154 QIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFN 213
Query: 82 RYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADS 135
RYL R RR+E+AN L LTERQIKIWFQNRRMK+KK+ L+ GG + + S
Sbjct: 214 RYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRS 267
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 97.8 bits (242), Expect = 3e-21
Identities = 54/114 (47%), Positives = 68/114 (59%), Gaps = 17/114 (14%)
Query: 39 QIYPWMQRM---------NSHSGVGYGADR--------RRGRQIYSRYQTLELEKEFHFN 81
QI+PWM+ +S SG D+ +R R Y+ Q +ELEKEFHFN
Sbjct: 154 QIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFN 213
Query: 82 RYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADS 135
RYL R RR+E+AN L LTERQIKIWFQNRRMK+KK+ L+ GG + + S
Sbjct: 214 RYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRS 267
>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
Length = 283
Score = 96.7 bits (239), Expect = 7e-21
Identities = 52/103 (50%), Positives = 65/103 (63%), Gaps = 12/103 (11%)
Query: 41 YPWMQRMNSHSGVGYGA---------DRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIE 91
+PWM+ +H+ G A + +R R Y+R Q LELEKEF FN+Y++R RR+E
Sbjct: 119 FPWMKSTKAHAWKGQWAGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVE 178
Query: 92 IANALCLTERQIKIWFQNRRMKWKKESNLT---STLSGGGGGA 131
+A L LTER IKIWFQNRRMKWKKE + T GGGG A
Sbjct: 179 LAVMLNLTERHIKIWFQNRRMKWKKEEDKKRGGGTAVGGGGVA 221
>gi|24497515 homeobox A3 isoform b [Homo sapiens]
Length = 285
Score = 93.6 bits (231), Expect = 6e-20
Identities = 46/79 (58%), Positives = 56/79 (70%)
Query: 57 ADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKK 116
A +R R Y+ Q +ELEKEFHFNRYL R RR+E+AN L LTERQIKIWFQNRRMK+KK
Sbjct: 31 ASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 90
Query: 117 ESNLTSTLSGGGGGATADS 135
+ L+ GG + + S
Sbjct: 91 DQKGKGMLTSSGGQSPSRS 109
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 93.2 bits (230), Expect = 8e-20
Identities = 46/79 (58%), Positives = 55/79 (69%)
Query: 57 ADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKK 116
A +R R Y+ Q +ELEKEFHFNRYL R RR+E+AN L L+ERQIKIWFQNRRMK+KK
Sbjct: 186 AASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKK 245
Query: 117 ESNLTSTLSGGGGGATADS 135
+ S GG + A S
Sbjct: 246 DQKAKGLASSSGGPSPAGS 264
>gi|10140847 homeobox A2 [Homo sapiens]
Length = 376
Score = 92.8 bits (229), Expect = 1e-19
Identities = 50/97 (51%), Positives = 61/97 (62%), Gaps = 4/97 (4%)
Query: 54 GYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMK 113
G G RR R Y+ Q LELEKEFHFN+YL R RR+EIA L LTERQ+K+WFQNRRMK
Sbjct: 138 GSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMK 197
Query: 114 WKKESNLTSTLSGGGGGATADSLGGKEEKREETEEEK 150
K+++ + G + + EK EE EEEK
Sbjct: 198 HKRQTQCKENQNSEGKCKSLED----SEKVEEDEEEK 230
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 91.7 bits (226), Expect = 2e-19
Identities = 52/103 (50%), Positives = 63/103 (61%), Gaps = 15/103 (14%)
Query: 37 SIQIYPWMQ-------RMNSHSGVGY--------GADRRRGRQIYSRYQTLELEKEFHFN 81
S QI+PWM+ + NS + G G +R R Y+ Q +ELEKEFHFN
Sbjct: 157 SKQIFPWMKESRQNSKQKNSCATAGESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFN 216
Query: 82 RYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESNLTSTL 124
RYL R RR+E+AN L LTERQIKIWFQNRRMK+KK+ L
Sbjct: 217 RYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAKGIL 259
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 85.1 bits (209), Expect = 2e-17
Identities = 49/113 (43%), Positives = 61/113 (53%), Gaps = 10/113 (8%)
Query: 40 IYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLT 99
I P M NS + RR R ++ Q LELE +F N+YL+R +R E+A +L LT
Sbjct: 222 ILPKMPDFNSQAQSNLLGKCRRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLT 281
Query: 100 ERQIKIWFQNRRMKWKKESNLTSTLS-------GGGGGATADSLGGKEEKREE 145
E Q+KIWFQNRRMKWK+ + GGGGGA GG EE E
Sbjct: 282 ETQVKIWFQNRRMKWKRSKKAKEQAAQEAEKQKGGGGGA---GKGGAEEPGAE 331
>gi|194363768 homeobox D9 [Homo sapiens]
Length = 352
Score = 84.7 bits (208), Expect = 3e-17
Identities = 42/59 (71%), Positives = 47/59 (79%)
Query: 60 RRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKES 118
R+ R Y++YQTLELEKEF FN YLTR RR E+A L LTERQ+KIWFQNRRMK KK S
Sbjct: 286 RKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMS 344
>gi|24497547 homeobox C9 [Homo sapiens]
Length = 260
Score = 84.3 bits (207), Expect = 4e-17
Identities = 41/57 (71%), Positives = 46/57 (80%)
Query: 60 RRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKK 116
R+ R Y++YQTLELEKEF FN YLTR RR E+A L LTERQ+KIWFQNRRMK KK
Sbjct: 193 RKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKK 249
>gi|4504465 homeobox B2 [Homo sapiens]
Length = 356
Score = 84.3 bits (207), Expect = 4e-17
Identities = 40/63 (63%), Positives = 48/63 (76%)
Query: 56 GADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWK 115
G RR R Y+ Q LELEKEFHFN+YL R RR+EIA L LTERQ+K+WFQNRRMK K
Sbjct: 140 GGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHK 199
Query: 116 KES 118
+++
Sbjct: 200 RQT 202
>gi|23510366 homeobox D10 [Homo sapiens]
Length = 340
Score = 82.0 bits (201), Expect = 2e-16
Identities = 39/59 (66%), Positives = 49/59 (83%)
Query: 60 RRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKES 118
R+ R Y+++QTLELEKEF FN YLTR RR+EI+ ++ LT+RQ+KIWFQNRRMK KK S
Sbjct: 267 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKKMS 325
>gi|23097236 homeobox A9 [Homo sapiens]
Length = 272
Score = 82.0 bits (201), Expect = 2e-16
Identities = 40/57 (70%), Positives = 46/57 (80%)
Query: 60 RRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKK 116
R+ R Y+++QTLELEKEF FN YLTR RR E+A L LTERQ+KIWFQNRRMK KK
Sbjct: 207 RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 263
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.128 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,769,512
Number of Sequences: 37866
Number of extensions: 241661
Number of successful extensions: 2393
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1930
Number of HSP's gapped (non-prelim): 446
length of query: 153
length of database: 18,247,518
effective HSP length: 93
effective length of query: 60
effective length of database: 14,725,980
effective search space: 883558800
effective search space used: 883558800
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.