Guide to the Human Genome
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Search of human proteins with 24475832

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|24475832 natural cytotoxicity triggering receptor 3 isoform
a [Homo sapiens]
         (201 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|24475832 natural cytotoxicity triggering receptor 3 isoform a...   415   e-116
gi|224586865 natural cytotoxicity triggering receptor 3 isoform ...   338   1e-93
gi|224586860 natural cytotoxicity triggering receptor 3 isoform ...   335   2e-92
gi|21361212 cytotoxic T-lymphocyte-associated protein 4 isoform ...    43   2e-04
gi|4502685 CD79A antigen isoform 1 precursor [Homo sapiens]            41   8e-04
gi|169178458 PREDICTED: hemicentin 2 [Homo sapiens]                    40   0.002
gi|239749684 PREDICTED: hemicentin 2 [Homo sapiens]                    40   0.002
gi|169177000 PREDICTED: hemicentin 2 [Homo sapiens]                    40   0.002
gi|222136611 poliovirus receptor-related 4 [Homo sapiens]              39   0.003
gi|83700231 cytotoxic T-lymphocyte-associated protein 4 isoform ...    39   0.004
gi|145275174 kin of IRRE-like 2 isoform c [Homo sapiens]               37   0.015
gi|145275170 kin of IRRE-like 2 isoform a [Homo sapiens]               37   0.015
gi|157168355 CD22 molecule [Homo sapiens]                              34   0.096
gi|30102948 hyaluronan and proteoglycan link protein 3 [Homo sap...    34   0.096
gi|61742797 basal cell adhesion molecule isoform 2 precursor [Ho...    33   0.16 
gi|31543106 basal cell adhesion molecule isoform 1 precursor [Ho...    33   0.16 
gi|22749325 zinc finger protein 48 [Homo sapiens]                      33   0.16 
gi|13489095 sialoadhesin precursor [Homo sapiens]                      33   0.16 
gi|23943856 sialic acid binding Ig-like lectin 9 [Homo sapiens]        33   0.21 
gi|47106069 sialic acid binding Ig-like lectin 15 [Homo sapiens]       32   0.28 
gi|56549117 dynamin 1 isoform 2 [Homo sapiens]                         32   0.47 
gi|59853099 dynamin 1 isoform 1 [Homo sapiens]                         32   0.47 
gi|4759066 sodium channel, voltage-gated, type II, beta [Homo sa...    31   0.62 
gi|5360210 poliovirus receptor related 2 isoform alpha precursor...    31   0.62 
gi|112789532 poliovirus receptor related 2 isoform delta precurs...    31   0.62 
gi|11038672 CD79A antigen isoform 2 precursor [Homo sapiens]           31   0.62 
gi|46358426 myelin protein zero-like 1 isoform b [Homo sapiens]        30   1.1  
gi|4506357 myelin protein zero-like 1 isoform a [Homo sapiens]         30   1.1  
gi|226437599 V-set and transmembrane domain containing 2B [Homo ...    30   1.1  
gi|239757226 PREDICTED: V-set and transmembrane domain containin...    30   1.1  

>gi|24475832 natural cytotoxicity triggering receptor 3 isoform a
           [Homo sapiens]
          Length = 201

 Score =  415 bits (1067), Expect = e-116
 Identities = 201/201 (100%), Positives = 201/201 (100%)

Query: 1   MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV 60
           MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV
Sbjct: 1   MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV 60

Query: 61  VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG 120
           VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG
Sbjct: 61  VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG 120

Query: 121 NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGKCLTWKGPRRQLPAVV 180
           NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGKCLTWKGPRRQLPAVV
Sbjct: 121 NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGKCLTWKGPRRQLPAVV 180

Query: 181 PAPLPPPCGSSAHLLPPVPGG 201
           PAPLPPPCGSSAHLLPPVPGG
Sbjct: 181 PAPLPPPCGSSAHLLPPVPGG 201


>gi|224586865 natural cytotoxicity triggering receptor 3 isoform c
           [Homo sapiens]
          Length = 190

 Score =  338 bits (868), Expect = 1e-93
 Identities = 166/166 (100%), Positives = 166/166 (100%)

Query: 1   MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV 60
           MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV
Sbjct: 1   MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV 60

Query: 61  VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG 120
           VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG
Sbjct: 61  VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG 120

Query: 121 NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGKC 166
           NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGKC
Sbjct: 121 NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGKC 166


>gi|224586860 natural cytotoxicity triggering receptor 3 isoform b
           [Homo sapiens]
          Length = 177

 Score =  335 bits (859), Expect = 2e-92
 Identities = 165/165 (100%), Positives = 165/165 (100%)

Query: 1   MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV 60
           MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV
Sbjct: 1   MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV 60

Query: 61  VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG 120
           VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG
Sbjct: 61  VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG 120

Query: 121 NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGK 165
           NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGK
Sbjct: 121 NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGK 165


>gi|21361212 cytotoxic T-lymphocyte-associated protein 4 isoform a
           precursor [Homo sapiens]
          Length = 223

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 53/194 (27%), Positives = 77/194 (39%), Gaps = 17/194 (8%)

Query: 6   LLILIMVHPGSC-ALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGK 64
           LL  ++  P  C A+ V+QP  +       A   C + AS G+     VT  R       
Sbjct: 24  LLFFLLFIPVFCKAMHVAQPAVVLASSRGIASFVCEY-ASPGKATEVRVTVLRQADSQVT 82

Query: 65  EVRNGTPEFRGRLAPLASSRFL---HDHQAELHIRDVRGHDASIYVCRVEVL---GLGVG 118
           EV   T      L  L  S        +Q  L I+ +R  D  +Y+C+VE++      +G
Sbjct: 83  EVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYLG 142

Query: 119 TGNGTRLVVEKEHPQLGAGTVLLLRA----GFYAVSFLSVAVGSTVYYQGKCLTWKGPRR 174
            GNGT++ V    P   +  +L + A    G +  SFL  AV  +     K L  + P  
Sbjct: 143 IGNGTQIYVIDPEPCPDSDFLLWILAAVSSGLFFYSFLLTAVSLS-----KMLKKRSPLT 197

Query: 175 QLPAVVPAPLPPPC 188
               V   P  P C
Sbjct: 198 TGVYVKMPPTEPEC 211


>gi|4502685 CD79A antigen isoform 1 precursor [Homo sapiens]
          Length = 226

 Score = 40.8 bits (94), Expect = 8e-04
 Identities = 48/181 (26%), Positives = 75/181 (41%), Gaps = 26/181 (14%)

Query: 4   MLLLILIMVHPGSCALWVSQ-PPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVP 62
           + LL  + + PG  ALW+ + P  +    G  A   C  N+S       +VTW+R  V+ 
Sbjct: 18  LFLLSAVYLGPGCQALWMHKVPASLMVSLGEDAHFQCPHNSSNN----ANVTWWR--VLH 71

Query: 63  GKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTGNG 122
           G       PEF G            D    L I++V      IYVCRV+          G
Sbjct: 72  GNYT--WPPEFLGPG---------EDPNGTLIIQNVNKSHGGIYVCRVQEGNESYQQSCG 120

Query: 123 TRLVVEKEHPQ----LGAGTV-LLLRAGFYAVSFLSVAVGSTVYYQGKCLTWKGPRRQLP 177
           T L V +  P+    +G GT   ++ A    + F +V  G+ + ++ +   W+  +  L 
Sbjct: 121 TYLRVRQPPPRPFLDMGEGTKNRIITAEGIILLFCAVVPGTLLLFRKR---WQNEKLGLD 177

Query: 178 A 178
           A
Sbjct: 178 A 178


>gi|169178458 PREDICTED: hemicentin 2 [Homo sapiens]
          Length = 3874

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 20/87 (22%)

Query: 25   PEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSR 84
            P++ T EGS AFLPC    S       ++TW +D                G+    A  +
Sbjct: 2854 PDLSTTEGSHAFLPCKARGSPE----PNITWDKD----------------GQPVSGAEGK 2893

Query: 85   FLHDHQAELHIRDVRGHDASIYVCRVE 111
            F      EL ++++ G DA  Y C  E
Sbjct: 2894 FTIQPSGELLVKNLEGQDAGTYTCTAE 2920


>gi|239749684 PREDICTED: hemicentin 2 [Homo sapiens]
          Length = 5065

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 20/87 (22%)

Query: 25   PEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSR 84
            P++ T EGS AFLPC    S       ++TW +D                G+    A  +
Sbjct: 4045 PDLSTTEGSHAFLPCKARGSPE----PNITWDKD----------------GQPVSGAEGK 4084

Query: 85   FLHDHQAELHIRDVRGHDASIYVCRVE 111
            F      EL ++++ G DA  Y C  E
Sbjct: 4085 FTIQPSGELLVKNLEGQDAGTYTCTAE 4111


>gi|169177000 PREDICTED: hemicentin 2 [Homo sapiens]
          Length = 3783

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 20/87 (22%)

Query: 25   PEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSR 84
            P++ T EGS AFLPC    S       ++TW +D                G+    A  +
Sbjct: 2763 PDLSTTEGSHAFLPCKARGSPE----PNITWDKD----------------GQPVSGAEGK 2802

Query: 85   FLHDHQAELHIRDVRGHDASIYVCRVE 111
            F      EL ++++ G DA  Y C  E
Sbjct: 2803 FTIQPSGELLVKNLEGQDAGTYTCTAE 2829


>gi|222136611 poliovirus receptor-related 4 [Homo sapiens]
          Length = 510

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 37/149 (24%), Positives = 56/149 (37%), Gaps = 13/149 (8%)

Query: 2   AWMLLLILIMVHPGSCALWVSQPPEIRTLE-GSSAFLPCSFNASQGRLAIGSVTWFRDEV 60
           AW+LLL+L+    G C     +  ++ T+  G  A LPC +    G   +G V W R + 
Sbjct: 14  AWLLLLLLLASFTGRCPAGELETSDVVTVVLGQDAKLPCFYRGDSGE-QVGQVAWARVDA 72

Query: 61  VPG---------KEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVE 111
             G         K   + +P + GR+      R  +     + +R+    D   Y CRV 
Sbjct: 73  GEGAQELALLHSKYGLHVSPAYEGRVEQPPPPR--NPLDGSVLLRNAVQADEGEYECRVS 130

Query: 112 VLGLGVGTGNGTRLVVEKEHPQLGAGTVL 140
               G         V+    P L  G  L
Sbjct: 131 TFPAGSFQARLRLRVLVPPLPSLNPGPAL 159


>gi|83700231 cytotoxic T-lymphocyte-associated protein 4 isoform b
           precursor [Homo sapiens]
          Length = 174

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 37/141 (26%), Positives = 58/141 (41%), Gaps = 10/141 (7%)

Query: 6   LLILIMVHPGSC-ALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGK 64
           LL  ++  P  C A+ V+QP  +       A   C + AS G+     VT  R       
Sbjct: 24  LLFFLLFIPVFCKAMHVAQPAVVLASSRGIASFVCEY-ASPGKATEVRVTVLRQADSQVT 82

Query: 65  EVRNGTPEFRGRLAPLASSRFL---HDHQAELHIRDVRGHDASIYVCRVEVL-----GLG 116
           EV   T      L  L  S        +Q  L I+ +R  D  +Y+C+VE++      LG
Sbjct: 83  EVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYLG 142

Query: 117 VGTGNGTRLVVEKEHPQLGAG 137
           +G G    ++ +++ P    G
Sbjct: 143 IGNGTQIYVIAKEKKPSYNRG 163


>gi|145275174 kin of IRRE-like 2 isoform c [Homo sapiens]
          Length = 708

 Score = 36.6 bits (83), Expect = 0.015
 Identities = 39/144 (27%), Positives = 57/144 (39%), Gaps = 12/144 (8%)

Query: 2   AWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVV 61
           A ++LL       G    ++ QP ++  L G  A LPC+  A       G V W +  + 
Sbjct: 8   ALLVLLFCFRGRAGPSPHFLQQPEDLVVLLGEEARLPCALGAYW-----GLVQWTKSGLA 62

Query: 62  PGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTGN 121
            G     G  +  G      S    +  Q +LHIR V   D + Y C+    GL      
Sbjct: 63  LG-----GQRDLPGWSRYWISGNAANG-QHDLHIRPVELEDEASYECQATQAGLRSRPAQ 116

Query: 122 GTRLVVEKEHPQLGAGTVLLLRAG 145
              ++V  E PQ+  G  + L AG
Sbjct: 117 -LHVLVPPEAPQVLGGPSVSLVAG 139


>gi|145275170 kin of IRRE-like 2 isoform a [Homo sapiens]
          Length = 633

 Score = 36.6 bits (83), Expect = 0.015
 Identities = 39/144 (27%), Positives = 57/144 (39%), Gaps = 12/144 (8%)

Query: 2   AWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVV 61
           A ++LL       G    ++ QP ++  L G  A LPC+  A       G V W +  + 
Sbjct: 8   ALLVLLFCFRGRAGPSPHFLQQPEDLVVLLGEEARLPCALGAYW-----GLVQWTKSGLA 62

Query: 62  PGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTGN 121
            G     G  +  G      S    +  Q +LHIR V   D + Y C+    GL      
Sbjct: 63  LG-----GQRDLPGWSRYWISGNAANG-QHDLHIRPVELEDEASYECQATQAGLRSRPAQ 116

Query: 122 GTRLVVEKEHPQLGAGTVLLLRAG 145
              ++V  E PQ+  G  + L AG
Sbjct: 117 -LHVLVPPEAPQVLGGPSVSLVAG 139


>gi|157168355 CD22 molecule [Homo sapiens]
          Length = 847

 Score = 33.9 bits (76), Expect = 0.096
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 3  WMLLLILIMVHPGSCALWVSQPPE-IRTLEGSSAFLPCSFNASQGRL 48
          W+LLL+L  +     + WV + PE +   EG+  ++PC++ A  G L
Sbjct: 7  WLLLLVLEYLAFSDSSKWVFEHPETLYAWEGACVWIPCTYRALDGDL 53


>gi|30102948 hyaluronan and proteoglycan link protein 3 [Homo
           sapiens]
          Length = 360

 Score = 33.9 bits (76), Expect = 0.096
 Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 6/90 (6%)

Query: 19  LWVSQPPE-IRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRL 77
           L V  P E + T +G+S  LPC +     R     V+  R  V   K   NG PE    +
Sbjct: 49  LVVETPEETLFTYQGASVILPCRY-----RYEPALVSPRRVRVKWWKLSENGAPEKDVLV 103

Query: 78  APLASSRFLHDHQAELHIRDVRGHDASIYV 107
           A     R   D+Q  +H+R  + HD S+ +
Sbjct: 104 AIGLRHRSFGDYQGRVHLRQDKEHDVSLEI 133


>gi|61742797 basal cell adhesion molecule isoform 2 precursor [Homo
           sapiens]
          Length = 588

 Score = 33.1 bits (74), Expect = 0.16
 Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 14/122 (11%)

Query: 4   MLLLILIMVHPGSCA-LWVSQPPEIRTLEGSSAFLPCSFNASQGRLAI--------GSVT 54
           +LL +L+  HP + A + +S PP +  + G S  L C+   +     +        G+  
Sbjct: 17  LLLAVLLAAHPDAQAEVRLSVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARP 76

Query: 55  WFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLG 114
                 + G E++    + RGR  P     +  D Q  L + + +  D   YVC V    
Sbjct: 77  RLASAEMQGSELQVTMHDTRGRSPP-----YQLDSQGRLVLAEAQVGDERDYVCVVRAGA 131

Query: 115 LG 116
            G
Sbjct: 132 AG 133


>gi|31543106 basal cell adhesion molecule isoform 1 precursor [Homo
           sapiens]
          Length = 628

 Score = 33.1 bits (74), Expect = 0.16
 Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 14/122 (11%)

Query: 4   MLLLILIMVHPGSCA-LWVSQPPEIRTLEGSSAFLPCSFNASQGRLAI--------GSVT 54
           +LL +L+  HP + A + +S PP +  + G S  L C+   +     +        G+  
Sbjct: 17  LLLAVLLAAHPDAQAEVRLSVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARP 76

Query: 55  WFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLG 114
                 + G E++    + RGR  P     +  D Q  L + + +  D   YVC V    
Sbjct: 77  RLASAEMQGSELQVTMHDTRGRSPP-----YQLDSQGRLVLAEAQVGDERDYVCVVRAGA 131

Query: 115 LG 116
            G
Sbjct: 132 AG 133


>gi|22749325 zinc finger protein 48 [Homo sapiens]
          Length = 618

 Score = 33.1 bits (74), Expect = 0.16
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 172 PRRQLPAVVPAPLPPPCGSSAHLLPPVP 199
           P   LPA++P+P PPP G+S  L P  P
Sbjct: 390 PGYPLPALIPSPPPPPLGTSPPLTPRSP 417


>gi|13489095 sialoadhesin precursor [Homo sapiens]
          Length = 1709

 Score = 33.1 bits (74), Expect = 0.16
 Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 14/139 (10%)

Query: 6   LLILIMVHPGSCALW-VSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVT--WF------ 56
           LL+L    P   A W VS P +++ ++GS   +PC F+          +T  W+      
Sbjct: 7   LLLLASFFPAGQASWGVSSPQDVQGVKGSCLLIPCIFSFPADVEVPDGITAIWYYDYSGQ 66

Query: 57  RDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQ-AELHIRDVRGHDASIYVCRVEVLGL 115
           R  V    + +     FRGR   + +     +H+   L ++D++  D+  Y  R E+  +
Sbjct: 67  RQVVSHSADPKLVEARFRGRTEFMGNP----EHRVCNLLLKDLQPEDSGSYNFRFEISEV 122

Query: 116 GVGTGNGTRLVVEKEHPQL 134
              +     LV   E P++
Sbjct: 123 NRWSDVKGTLVTVTEEPRV 141


>gi|23943856 sialic acid binding Ig-like lectin 9 [Homo sapiens]
          Length = 463

 Score = 32.7 bits (73), Expect = 0.21
 Identities = 36/125 (28%), Positives = 48/125 (38%), Gaps = 20/125 (16%)

Query: 4   MLLLILIMVH-----PGSCALWVSQPPEIRTLEGSSAFLPCSFN-ASQGRLAIGSVT--- 54
           MLLL+L ++       G  +  ++    +   EG    +PCSF+  S G +  G V    
Sbjct: 1   MLLLLLPLLWGRERAEGQTSKLLTMQSSVTVQEGLCVHVPCSFSYPSHGWIYPGPVVHGY 60

Query: 55  WFRD--------EVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIY 106
           WFR+         V      R    E R R   L      H     L IRD R  DA  Y
Sbjct: 61  WFREGANTDQDAPVATNNPARAVWEETRDRFHLLGDP---HTKNCTLSIRDARRSDAGRY 117

Query: 107 VCRVE 111
             R+E
Sbjct: 118 FFRME 122


>gi|47106069 sialic acid binding Ig-like lectin 15 [Homo sapiens]
          Length = 328

 Score = 32.3 bits (72), Expect = 0.28
 Identities = 33/117 (28%), Positives = 42/117 (35%), Gaps = 18/117 (15%)

Query: 12  VHPGSCALWVSQ-PPEIRTLEGSSAFLPCSFNASQGRLAIGSVT--W-----------FR 57
           VH      W  Q PPE+    G +A LPC+F     R   G +T  W           FR
Sbjct: 36  VHSSPAQRWSMQVPPEVSAEAGDAAVLPCTFTHPH-RHYDGPLTAIWRAGEPYAGPQVFR 94

Query: 58  DEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLG 114
                G E+        GR   L + R    +   L +  +   D   Y CRVE  G
Sbjct: 95  CAAARGSELCQTALSLHGRFRLLGNPR---RNDLSLRVERLALADDRRYFCRVEFAG 148


>gi|56549117 dynamin 1 isoform 2 [Homo sapiens]
          Length = 851

 Score = 31.6 bits (70), Expect = 0.47
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 8/36 (22%)

Query: 172 PRRQLPAVVPA--------PLPPPCGSSAHLLPPVP 199
           P+R+ PAV PA        P PPP GS+    PPVP
Sbjct: 781 PQRRAPAVPPARPGSRGPAPGPPPAGSALGGAPPVP 816


>gi|59853099 dynamin 1 isoform 1 [Homo sapiens]
          Length = 864

 Score = 31.6 bits (70), Expect = 0.47
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 8/36 (22%)

Query: 172 PRRQLPAVVPA--------PLPPPCGSSAHLLPPVP 199
           P+R+ PAV PA        P PPP GS+    PPVP
Sbjct: 781 PQRRAPAVPPARPGSRGPAPGPPPAGSALGGAPPVP 816


>gi|4759066 sodium channel, voltage-gated, type II, beta [Homo
           sapiens]
          Length = 215

 Score = 31.2 bits (69), Expect = 0.62
 Identities = 43/166 (25%), Positives = 68/166 (40%), Gaps = 17/166 (10%)

Query: 5   LLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQG-RLAIGSVTWFRDEVVPG 63
           L L   +V PG  ++ V+ P  +  L GS A LPC+FN+         S+ W   E    
Sbjct: 17  LSLFFSLVPPGR-SMEVTVPATLNVLNGSDARLPCTFNSCYTVNHKQFSLNWTYQECNNC 75

Query: 64  KEVRNGTPEFRGRLAPLASSRFL---------HDHQAELHIRDVRGHDASIYVCRV-EVL 113
            E      +FR ++  L   RF            +   + +R+V+  D  IY C +    
Sbjct: 76  SE--EMFLQFRMKIINLKLERFQDRVEFSGNPSKYDVSVMLRNVQPEDEGIYNCYIMNPP 133

Query: 114 GLGVGTGNGTRLVVEKEHPQLGAGTVLLLRA---GFYAVSFLSVAV 156
               G G     V+ +E P+  +   +++ A   GF AV  L + V
Sbjct: 134 DRHRGHGKIHLQVLMEEPPERDSTVAVIVGASVGGFLAVVILVLMV 179


>gi|5360210 poliovirus receptor related 2 isoform alpha precursor
          [Homo sapiens]
          Length = 479

 Score = 31.2 bits (69), Expect = 0.62
 Identities = 18/54 (33%), Positives = 27/54 (50%)

Query: 6  LLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDE 59
          LL+L+++  G+  + V   PE+R   G +  LPC        L I  VTW R +
Sbjct: 21 LLLLLLLETGAQDVRVQVLPEVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPD 74


>gi|112789532 poliovirus receptor related 2 isoform delta
          precursor [Homo sapiens]
          Length = 538

 Score = 31.2 bits (69), Expect = 0.62
 Identities = 18/54 (33%), Positives = 27/54 (50%)

Query: 6  LLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDE 59
          LL+L+++  G+  + V   PE+R   G +  LPC        L I  VTW R +
Sbjct: 21 LLLLLLLETGAQDVRVQVLPEVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPD 74


>gi|11038672 CD79A antigen isoform 2 precursor [Homo sapiens]
          Length = 188

 Score = 31.2 bits (69), Expect = 0.62
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 7/75 (9%)

Query: 4  MLLLILIMVHPGSCALWVSQ-PPEIRTLEGSSAFLPCSFNASQG------RLAIGSVTWF 56
          + LL  + + PG  ALW+ + P  +    G  A   C  N+S        R+  G+ TW 
Sbjct: 18 LFLLSAVYLGPGCQALWMHKVPASLMVSLGEDAHFQCPHNSSNNANVTWWRVLHGNYTWP 77

Query: 57 RDEVVPGKEVRNGTP 71
           + + PG++     P
Sbjct: 78 PEFLGPGEDPNEPPP 92


>gi|46358426 myelin protein zero-like 1 isoform b [Homo sapiens]
          Length = 209

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 15/140 (10%)

Query: 4   MLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTW-FRDE--- 59
           +L   L ++  G  AL V  P EI    G+   L C F ++     + SV+W F+ E   
Sbjct: 23  VLAAALGLLTAGVSALEVYTPKEIFVANGTQGKLTCKFKSTSTTGGLTSVSWSFQPEGAD 82

Query: 60  -------VVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVE- 111
                     G+      P F+ R++       L    A ++I +++      Y+C V+ 
Sbjct: 83  TTVSFFHYSQGQVYLGNYPPFKDRISWAGD---LDKKDASINIENMQFIHNGTYICDVKN 139

Query: 112 VLGLGVGTGNGTRLVVEKEH 131
              + V  G+    VVEKE+
Sbjct: 140 PPDIVVQPGHIRLYVVEKEN 159


>gi|4506357 myelin protein zero-like 1 isoform a [Homo sapiens]
          Length = 269

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 15/140 (10%)

Query: 4   MLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTW-FRDE--- 59
           +L   L ++  G  AL V  P EI    G+   L C F ++     + SV+W F+ E   
Sbjct: 23  VLAAALGLLTAGVSALEVYTPKEIFVANGTQGKLTCKFKSTSTTGGLTSVSWSFQPEGAD 82

Query: 60  -------VVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVE- 111
                     G+      P F+ R++       L    A ++I +++      Y+C V+ 
Sbjct: 83  TTVSFFHYSQGQVYLGNYPPFKDRISWAGD---LDKKDASINIENMQFIHNGTYICDVKN 139

Query: 112 VLGLGVGTGNGTRLVVEKEH 131
              + V  G+    VVEKE+
Sbjct: 140 PPDIVVQPGHIRLYVVEKEN 159


>gi|226437599 V-set and transmembrane domain containing 2B [Homo
           sapiens]
          Length = 285

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 9/102 (8%)

Query: 18  ALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGK---EVRNGTPEFR 74
           A +   P ++   EG    +PC+F AS        + W+  +  P +   E+    P  R
Sbjct: 28  AAFTEVPKDVTVREGDDIEMPCAFRASGATSYSLEIQWWYLKEPPRELLHELALSVPGAR 87

Query: 75  GRLAPLASSRFL------HDHQAELHIRDVRGHDASIYVCRV 110
            ++    +++        +D    L +  VR  D  +Y CRV
Sbjct: 88  SKVTNKDATKISTVRVQGNDISHRLRLSAVRLQDEGVYECRV 129


>gi|239757226 PREDICTED: V-set and transmembrane domain containing
           2B [Homo sapiens]
          Length = 285

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 9/102 (8%)

Query: 18  ALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGK---EVRNGTPEFR 74
           A +   P ++   EG    +PC+F AS        + W+  +  P +   E+    P  R
Sbjct: 28  AAFTEVPKDVTVREGDDIEMPCAFRASGATSYSLEIQWWYLKEPPRELLHELALSVPGAR 87

Query: 75  GRLAPLASSRFL------HDHQAELHIRDVRGHDASIYVCRV 110
            ++    +++        +D    L +  VR  D  +Y CRV
Sbjct: 88  SKVTNKDATKISTVRVQGNDISHRLRLSAVRLQDEGVYECRV 129


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.140    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,737,972
Number of Sequences: 37866
Number of extensions: 478468
Number of successful extensions: 2580
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 2503
Number of HSP's gapped (non-prelim): 127
length of query: 201
length of database: 18,247,518
effective HSP length: 97
effective length of query: 104
effective length of database: 14,574,516
effective search space: 1515749664
effective search space used: 1515749664
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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