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Search of human proteins with 24475832
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|24475832 natural cytotoxicity triggering receptor 3 isoform
a [Homo sapiens]
(201 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24475832 natural cytotoxicity triggering receptor 3 isoform a... 415 e-116
gi|224586865 natural cytotoxicity triggering receptor 3 isoform ... 338 1e-93
gi|224586860 natural cytotoxicity triggering receptor 3 isoform ... 335 2e-92
gi|21361212 cytotoxic T-lymphocyte-associated protein 4 isoform ... 43 2e-04
gi|4502685 CD79A antigen isoform 1 precursor [Homo sapiens] 41 8e-04
gi|169178458 PREDICTED: hemicentin 2 [Homo sapiens] 40 0.002
gi|239749684 PREDICTED: hemicentin 2 [Homo sapiens] 40 0.002
gi|169177000 PREDICTED: hemicentin 2 [Homo sapiens] 40 0.002
gi|222136611 poliovirus receptor-related 4 [Homo sapiens] 39 0.003
gi|83700231 cytotoxic T-lymphocyte-associated protein 4 isoform ... 39 0.004
gi|145275174 kin of IRRE-like 2 isoform c [Homo sapiens] 37 0.015
gi|145275170 kin of IRRE-like 2 isoform a [Homo sapiens] 37 0.015
gi|157168355 CD22 molecule [Homo sapiens] 34 0.096
gi|30102948 hyaluronan and proteoglycan link protein 3 [Homo sap... 34 0.096
gi|61742797 basal cell adhesion molecule isoform 2 precursor [Ho... 33 0.16
gi|31543106 basal cell adhesion molecule isoform 1 precursor [Ho... 33 0.16
gi|22749325 zinc finger protein 48 [Homo sapiens] 33 0.16
gi|13489095 sialoadhesin precursor [Homo sapiens] 33 0.16
gi|23943856 sialic acid binding Ig-like lectin 9 [Homo sapiens] 33 0.21
gi|47106069 sialic acid binding Ig-like lectin 15 [Homo sapiens] 32 0.28
gi|56549117 dynamin 1 isoform 2 [Homo sapiens] 32 0.47
gi|59853099 dynamin 1 isoform 1 [Homo sapiens] 32 0.47
gi|4759066 sodium channel, voltage-gated, type II, beta [Homo sa... 31 0.62
gi|5360210 poliovirus receptor related 2 isoform alpha precursor... 31 0.62
gi|112789532 poliovirus receptor related 2 isoform delta precurs... 31 0.62
gi|11038672 CD79A antigen isoform 2 precursor [Homo sapiens] 31 0.62
gi|46358426 myelin protein zero-like 1 isoform b [Homo sapiens] 30 1.1
gi|4506357 myelin protein zero-like 1 isoform a [Homo sapiens] 30 1.1
gi|226437599 V-set and transmembrane domain containing 2B [Homo ... 30 1.1
gi|239757226 PREDICTED: V-set and transmembrane domain containin... 30 1.1
>gi|24475832 natural cytotoxicity triggering receptor 3 isoform a
[Homo sapiens]
Length = 201
Score = 415 bits (1067), Expect = e-116
Identities = 201/201 (100%), Positives = 201/201 (100%)
Query: 1 MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV 60
MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV
Sbjct: 1 MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV 60
Query: 61 VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG 120
VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG
Sbjct: 61 VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG 120
Query: 121 NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGKCLTWKGPRRQLPAVV 180
NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGKCLTWKGPRRQLPAVV
Sbjct: 121 NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGKCLTWKGPRRQLPAVV 180
Query: 181 PAPLPPPCGSSAHLLPPVPGG 201
PAPLPPPCGSSAHLLPPVPGG
Sbjct: 181 PAPLPPPCGSSAHLLPPVPGG 201
>gi|224586865 natural cytotoxicity triggering receptor 3 isoform c
[Homo sapiens]
Length = 190
Score = 338 bits (868), Expect = 1e-93
Identities = 166/166 (100%), Positives = 166/166 (100%)
Query: 1 MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV 60
MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV
Sbjct: 1 MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV 60
Query: 61 VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG 120
VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG
Sbjct: 61 VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG 120
Query: 121 NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGKC 166
NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGKC
Sbjct: 121 NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGKC 166
>gi|224586860 natural cytotoxicity triggering receptor 3 isoform b
[Homo sapiens]
Length = 177
Score = 335 bits (859), Expect = 2e-92
Identities = 165/165 (100%), Positives = 165/165 (100%)
Query: 1 MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV 60
MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV
Sbjct: 1 MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV 60
Query: 61 VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG 120
VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG
Sbjct: 61 VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG 120
Query: 121 NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGK 165
NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGK
Sbjct: 121 NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGK 165
>gi|21361212 cytotoxic T-lymphocyte-associated protein 4 isoform a
precursor [Homo sapiens]
Length = 223
Score = 42.7 bits (99), Expect = 2e-04
Identities = 53/194 (27%), Positives = 77/194 (39%), Gaps = 17/194 (8%)
Query: 6 LLILIMVHPGSC-ALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGK 64
LL ++ P C A+ V+QP + A C + AS G+ VT R
Sbjct: 24 LLFFLLFIPVFCKAMHVAQPAVVLASSRGIASFVCEY-ASPGKATEVRVTVLRQADSQVT 82
Query: 65 EVRNGTPEFRGRLAPLASSRFL---HDHQAELHIRDVRGHDASIYVCRVEVL---GLGVG 118
EV T L L S +Q L I+ +R D +Y+C+VE++ +G
Sbjct: 83 EVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYLG 142
Query: 119 TGNGTRLVVEKEHPQLGAGTVLLLRA----GFYAVSFLSVAVGSTVYYQGKCLTWKGPRR 174
GNGT++ V P + +L + A G + SFL AV + K L + P
Sbjct: 143 IGNGTQIYVIDPEPCPDSDFLLWILAAVSSGLFFYSFLLTAVSLS-----KMLKKRSPLT 197
Query: 175 QLPAVVPAPLPPPC 188
V P P C
Sbjct: 198 TGVYVKMPPTEPEC 211
>gi|4502685 CD79A antigen isoform 1 precursor [Homo sapiens]
Length = 226
Score = 40.8 bits (94), Expect = 8e-04
Identities = 48/181 (26%), Positives = 75/181 (41%), Gaps = 26/181 (14%)
Query: 4 MLLLILIMVHPGSCALWVSQ-PPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVP 62
+ LL + + PG ALW+ + P + G A C N+S +VTW+R V+
Sbjct: 18 LFLLSAVYLGPGCQALWMHKVPASLMVSLGEDAHFQCPHNSSNN----ANVTWWR--VLH 71
Query: 63 GKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTGNG 122
G PEF G D L I++V IYVCRV+ G
Sbjct: 72 GNYT--WPPEFLGPG---------EDPNGTLIIQNVNKSHGGIYVCRVQEGNESYQQSCG 120
Query: 123 TRLVVEKEHPQ----LGAGTV-LLLRAGFYAVSFLSVAVGSTVYYQGKCLTWKGPRRQLP 177
T L V + P+ +G GT ++ A + F +V G+ + ++ + W+ + L
Sbjct: 121 TYLRVRQPPPRPFLDMGEGTKNRIITAEGIILLFCAVVPGTLLLFRKR---WQNEKLGLD 177
Query: 178 A 178
A
Sbjct: 178 A 178
>gi|169178458 PREDICTED: hemicentin 2 [Homo sapiens]
Length = 3874
Score = 39.7 bits (91), Expect = 0.002
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 20/87 (22%)
Query: 25 PEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSR 84
P++ T EGS AFLPC S ++TW +D G+ A +
Sbjct: 2854 PDLSTTEGSHAFLPCKARGSPE----PNITWDKD----------------GQPVSGAEGK 2893
Query: 85 FLHDHQAELHIRDVRGHDASIYVCRVE 111
F EL ++++ G DA Y C E
Sbjct: 2894 FTIQPSGELLVKNLEGQDAGTYTCTAE 2920
>gi|239749684 PREDICTED: hemicentin 2 [Homo sapiens]
Length = 5065
Score = 39.7 bits (91), Expect = 0.002
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 20/87 (22%)
Query: 25 PEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSR 84
P++ T EGS AFLPC S ++TW +D G+ A +
Sbjct: 4045 PDLSTTEGSHAFLPCKARGSPE----PNITWDKD----------------GQPVSGAEGK 4084
Query: 85 FLHDHQAELHIRDVRGHDASIYVCRVE 111
F EL ++++ G DA Y C E
Sbjct: 4085 FTIQPSGELLVKNLEGQDAGTYTCTAE 4111
>gi|169177000 PREDICTED: hemicentin 2 [Homo sapiens]
Length = 3783
Score = 39.7 bits (91), Expect = 0.002
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 20/87 (22%)
Query: 25 PEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSR 84
P++ T EGS AFLPC S ++TW +D G+ A +
Sbjct: 2763 PDLSTTEGSHAFLPCKARGSPE----PNITWDKD----------------GQPVSGAEGK 2802
Query: 85 FLHDHQAELHIRDVRGHDASIYVCRVE 111
F EL ++++ G DA Y C E
Sbjct: 2803 FTIQPSGELLVKNLEGQDAGTYTCTAE 2829
>gi|222136611 poliovirus receptor-related 4 [Homo sapiens]
Length = 510
Score = 38.9 bits (89), Expect = 0.003
Identities = 37/149 (24%), Positives = 56/149 (37%), Gaps = 13/149 (8%)
Query: 2 AWMLLLILIMVHPGSCALWVSQPPEIRTLE-GSSAFLPCSFNASQGRLAIGSVTWFRDEV 60
AW+LLL+L+ G C + ++ T+ G A LPC + G +G V W R +
Sbjct: 14 AWLLLLLLLASFTGRCPAGELETSDVVTVVLGQDAKLPCFYRGDSGE-QVGQVAWARVDA 72
Query: 61 VPG---------KEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVE 111
G K + +P + GR+ R + + +R+ D Y CRV
Sbjct: 73 GEGAQELALLHSKYGLHVSPAYEGRVEQPPPPR--NPLDGSVLLRNAVQADEGEYECRVS 130
Query: 112 VLGLGVGTGNGTRLVVEKEHPQLGAGTVL 140
G V+ P L G L
Sbjct: 131 TFPAGSFQARLRLRVLVPPLPSLNPGPAL 159
>gi|83700231 cytotoxic T-lymphocyte-associated protein 4 isoform b
precursor [Homo sapiens]
Length = 174
Score = 38.5 bits (88), Expect = 0.004
Identities = 37/141 (26%), Positives = 58/141 (41%), Gaps = 10/141 (7%)
Query: 6 LLILIMVHPGSC-ALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGK 64
LL ++ P C A+ V+QP + A C + AS G+ VT R
Sbjct: 24 LLFFLLFIPVFCKAMHVAQPAVVLASSRGIASFVCEY-ASPGKATEVRVTVLRQADSQVT 82
Query: 65 EVRNGTPEFRGRLAPLASSRFL---HDHQAELHIRDVRGHDASIYVCRVEVL-----GLG 116
EV T L L S +Q L I+ +R D +Y+C+VE++ LG
Sbjct: 83 EVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYLG 142
Query: 117 VGTGNGTRLVVEKEHPQLGAG 137
+G G ++ +++ P G
Sbjct: 143 IGNGTQIYVIAKEKKPSYNRG 163
>gi|145275174 kin of IRRE-like 2 isoform c [Homo sapiens]
Length = 708
Score = 36.6 bits (83), Expect = 0.015
Identities = 39/144 (27%), Positives = 57/144 (39%), Gaps = 12/144 (8%)
Query: 2 AWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVV 61
A ++LL G ++ QP ++ L G A LPC+ A G V W + +
Sbjct: 8 ALLVLLFCFRGRAGPSPHFLQQPEDLVVLLGEEARLPCALGAYW-----GLVQWTKSGLA 62
Query: 62 PGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTGN 121
G G + G S + Q +LHIR V D + Y C+ GL
Sbjct: 63 LG-----GQRDLPGWSRYWISGNAANG-QHDLHIRPVELEDEASYECQATQAGLRSRPAQ 116
Query: 122 GTRLVVEKEHPQLGAGTVLLLRAG 145
++V E PQ+ G + L AG
Sbjct: 117 -LHVLVPPEAPQVLGGPSVSLVAG 139
>gi|145275170 kin of IRRE-like 2 isoform a [Homo sapiens]
Length = 633
Score = 36.6 bits (83), Expect = 0.015
Identities = 39/144 (27%), Positives = 57/144 (39%), Gaps = 12/144 (8%)
Query: 2 AWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVV 61
A ++LL G ++ QP ++ L G A LPC+ A G V W + +
Sbjct: 8 ALLVLLFCFRGRAGPSPHFLQQPEDLVVLLGEEARLPCALGAYW-----GLVQWTKSGLA 62
Query: 62 PGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTGN 121
G G + G S + Q +LHIR V D + Y C+ GL
Sbjct: 63 LG-----GQRDLPGWSRYWISGNAANG-QHDLHIRPVELEDEASYECQATQAGLRSRPAQ 116
Query: 122 GTRLVVEKEHPQLGAGTVLLLRAG 145
++V E PQ+ G + L AG
Sbjct: 117 -LHVLVPPEAPQVLGGPSVSLVAG 139
>gi|157168355 CD22 molecule [Homo sapiens]
Length = 847
Score = 33.9 bits (76), Expect = 0.096
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 3 WMLLLILIMVHPGSCALWVSQPPE-IRTLEGSSAFLPCSFNASQGRL 48
W+LLL+L + + WV + PE + EG+ ++PC++ A G L
Sbjct: 7 WLLLLVLEYLAFSDSSKWVFEHPETLYAWEGACVWIPCTYRALDGDL 53
>gi|30102948 hyaluronan and proteoglycan link protein 3 [Homo
sapiens]
Length = 360
Score = 33.9 bits (76), Expect = 0.096
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 19 LWVSQPPE-IRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRL 77
L V P E + T +G+S LPC + R V+ R V K NG PE +
Sbjct: 49 LVVETPEETLFTYQGASVILPCRY-----RYEPALVSPRRVRVKWWKLSENGAPEKDVLV 103
Query: 78 APLASSRFLHDHQAELHIRDVRGHDASIYV 107
A R D+Q +H+R + HD S+ +
Sbjct: 104 AIGLRHRSFGDYQGRVHLRQDKEHDVSLEI 133
>gi|61742797 basal cell adhesion molecule isoform 2 precursor [Homo
sapiens]
Length = 588
Score = 33.1 bits (74), Expect = 0.16
Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 14/122 (11%)
Query: 4 MLLLILIMVHPGSCA-LWVSQPPEIRTLEGSSAFLPCSFNASQGRLAI--------GSVT 54
+LL +L+ HP + A + +S PP + + G S L C+ + + G+
Sbjct: 17 LLLAVLLAAHPDAQAEVRLSVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARP 76
Query: 55 WFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLG 114
+ G E++ + RGR P + D Q L + + + D YVC V
Sbjct: 77 RLASAEMQGSELQVTMHDTRGRSPP-----YQLDSQGRLVLAEAQVGDERDYVCVVRAGA 131
Query: 115 LG 116
G
Sbjct: 132 AG 133
>gi|31543106 basal cell adhesion molecule isoform 1 precursor [Homo
sapiens]
Length = 628
Score = 33.1 bits (74), Expect = 0.16
Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 14/122 (11%)
Query: 4 MLLLILIMVHPGSCA-LWVSQPPEIRTLEGSSAFLPCSFNASQGRLAI--------GSVT 54
+LL +L+ HP + A + +S PP + + G S L C+ + + G+
Sbjct: 17 LLLAVLLAAHPDAQAEVRLSVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARP 76
Query: 55 WFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLG 114
+ G E++ + RGR P + D Q L + + + D YVC V
Sbjct: 77 RLASAEMQGSELQVTMHDTRGRSPP-----YQLDSQGRLVLAEAQVGDERDYVCVVRAGA 131
Query: 115 LG 116
G
Sbjct: 132 AG 133
>gi|22749325 zinc finger protein 48 [Homo sapiens]
Length = 618
Score = 33.1 bits (74), Expect = 0.16
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 172 PRRQLPAVVPAPLPPPCGSSAHLLPPVP 199
P LPA++P+P PPP G+S L P P
Sbjct: 390 PGYPLPALIPSPPPPPLGTSPPLTPRSP 417
>gi|13489095 sialoadhesin precursor [Homo sapiens]
Length = 1709
Score = 33.1 bits (74), Expect = 0.16
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 14/139 (10%)
Query: 6 LLILIMVHPGSCALW-VSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVT--WF------ 56
LL+L P A W VS P +++ ++GS +PC F+ +T W+
Sbjct: 7 LLLLASFFPAGQASWGVSSPQDVQGVKGSCLLIPCIFSFPADVEVPDGITAIWYYDYSGQ 66
Query: 57 RDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQ-AELHIRDVRGHDASIYVCRVEVLGL 115
R V + + FRGR + + +H+ L ++D++ D+ Y R E+ +
Sbjct: 67 RQVVSHSADPKLVEARFRGRTEFMGNP----EHRVCNLLLKDLQPEDSGSYNFRFEISEV 122
Query: 116 GVGTGNGTRLVVEKEHPQL 134
+ LV E P++
Sbjct: 123 NRWSDVKGTLVTVTEEPRV 141
>gi|23943856 sialic acid binding Ig-like lectin 9 [Homo sapiens]
Length = 463
Score = 32.7 bits (73), Expect = 0.21
Identities = 36/125 (28%), Positives = 48/125 (38%), Gaps = 20/125 (16%)
Query: 4 MLLLILIMVH-----PGSCALWVSQPPEIRTLEGSSAFLPCSFN-ASQGRLAIGSVT--- 54
MLLL+L ++ G + ++ + EG +PCSF+ S G + G V
Sbjct: 1 MLLLLLPLLWGRERAEGQTSKLLTMQSSVTVQEGLCVHVPCSFSYPSHGWIYPGPVVHGY 60
Query: 55 WFRD--------EVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIY 106
WFR+ V R E R R L H L IRD R DA Y
Sbjct: 61 WFREGANTDQDAPVATNNPARAVWEETRDRFHLLGDP---HTKNCTLSIRDARRSDAGRY 117
Query: 107 VCRVE 111
R+E
Sbjct: 118 FFRME 122
>gi|47106069 sialic acid binding Ig-like lectin 15 [Homo sapiens]
Length = 328
Score = 32.3 bits (72), Expect = 0.28
Identities = 33/117 (28%), Positives = 42/117 (35%), Gaps = 18/117 (15%)
Query: 12 VHPGSCALWVSQ-PPEIRTLEGSSAFLPCSFNASQGRLAIGSVT--W-----------FR 57
VH W Q PPE+ G +A LPC+F R G +T W FR
Sbjct: 36 VHSSPAQRWSMQVPPEVSAEAGDAAVLPCTFTHPH-RHYDGPLTAIWRAGEPYAGPQVFR 94
Query: 58 DEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLG 114
G E+ GR L + R + L + + D Y CRVE G
Sbjct: 95 CAAARGSELCQTALSLHGRFRLLGNPR---RNDLSLRVERLALADDRRYFCRVEFAG 148
>gi|56549117 dynamin 1 isoform 2 [Homo sapiens]
Length = 851
Score = 31.6 bits (70), Expect = 0.47
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 8/36 (22%)
Query: 172 PRRQLPAVVPA--------PLPPPCGSSAHLLPPVP 199
P+R+ PAV PA P PPP GS+ PPVP
Sbjct: 781 PQRRAPAVPPARPGSRGPAPGPPPAGSALGGAPPVP 816
>gi|59853099 dynamin 1 isoform 1 [Homo sapiens]
Length = 864
Score = 31.6 bits (70), Expect = 0.47
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 8/36 (22%)
Query: 172 PRRQLPAVVPA--------PLPPPCGSSAHLLPPVP 199
P+R+ PAV PA P PPP GS+ PPVP
Sbjct: 781 PQRRAPAVPPARPGSRGPAPGPPPAGSALGGAPPVP 816
>gi|4759066 sodium channel, voltage-gated, type II, beta [Homo
sapiens]
Length = 215
Score = 31.2 bits (69), Expect = 0.62
Identities = 43/166 (25%), Positives = 68/166 (40%), Gaps = 17/166 (10%)
Query: 5 LLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQG-RLAIGSVTWFRDEVVPG 63
L L +V PG ++ V+ P + L GS A LPC+FN+ S+ W E
Sbjct: 17 LSLFFSLVPPGR-SMEVTVPATLNVLNGSDARLPCTFNSCYTVNHKQFSLNWTYQECNNC 75
Query: 64 KEVRNGTPEFRGRLAPLASSRFL---------HDHQAELHIRDVRGHDASIYVCRV-EVL 113
E +FR ++ L RF + + +R+V+ D IY C +
Sbjct: 76 SE--EMFLQFRMKIINLKLERFQDRVEFSGNPSKYDVSVMLRNVQPEDEGIYNCYIMNPP 133
Query: 114 GLGVGTGNGTRLVVEKEHPQLGAGTVLLLRA---GFYAVSFLSVAV 156
G G V+ +E P+ + +++ A GF AV L + V
Sbjct: 134 DRHRGHGKIHLQVLMEEPPERDSTVAVIVGASVGGFLAVVILVLMV 179
>gi|5360210 poliovirus receptor related 2 isoform alpha precursor
[Homo sapiens]
Length = 479
Score = 31.2 bits (69), Expect = 0.62
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 6 LLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDE 59
LL+L+++ G+ + V PE+R G + LPC L I VTW R +
Sbjct: 21 LLLLLLLETGAQDVRVQVLPEVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPD 74
>gi|112789532 poliovirus receptor related 2 isoform delta
precursor [Homo sapiens]
Length = 538
Score = 31.2 bits (69), Expect = 0.62
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 6 LLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDE 59
LL+L+++ G+ + V PE+R G + LPC L I VTW R +
Sbjct: 21 LLLLLLLETGAQDVRVQVLPEVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPD 74
>gi|11038672 CD79A antigen isoform 2 precursor [Homo sapiens]
Length = 188
Score = 31.2 bits (69), Expect = 0.62
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 4 MLLLILIMVHPGSCALWVSQ-PPEIRTLEGSSAFLPCSFNASQG------RLAIGSVTWF 56
+ LL + + PG ALW+ + P + G A C N+S R+ G+ TW
Sbjct: 18 LFLLSAVYLGPGCQALWMHKVPASLMVSLGEDAHFQCPHNSSNNANVTWWRVLHGNYTWP 77
Query: 57 RDEVVPGKEVRNGTP 71
+ + PG++ P
Sbjct: 78 PEFLGPGEDPNEPPP 92
>gi|46358426 myelin protein zero-like 1 isoform b [Homo sapiens]
Length = 209
Score = 30.4 bits (67), Expect = 1.1
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 15/140 (10%)
Query: 4 MLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTW-FRDE--- 59
+L L ++ G AL V P EI G+ L C F ++ + SV+W F+ E
Sbjct: 23 VLAAALGLLTAGVSALEVYTPKEIFVANGTQGKLTCKFKSTSTTGGLTSVSWSFQPEGAD 82
Query: 60 -------VVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVE- 111
G+ P F+ R++ L A ++I +++ Y+C V+
Sbjct: 83 TTVSFFHYSQGQVYLGNYPPFKDRISWAGD---LDKKDASINIENMQFIHNGTYICDVKN 139
Query: 112 VLGLGVGTGNGTRLVVEKEH 131
+ V G+ VVEKE+
Sbjct: 140 PPDIVVQPGHIRLYVVEKEN 159
>gi|4506357 myelin protein zero-like 1 isoform a [Homo sapiens]
Length = 269
Score = 30.4 bits (67), Expect = 1.1
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 15/140 (10%)
Query: 4 MLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTW-FRDE--- 59
+L L ++ G AL V P EI G+ L C F ++ + SV+W F+ E
Sbjct: 23 VLAAALGLLTAGVSALEVYTPKEIFVANGTQGKLTCKFKSTSTTGGLTSVSWSFQPEGAD 82
Query: 60 -------VVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVE- 111
G+ P F+ R++ L A ++I +++ Y+C V+
Sbjct: 83 TTVSFFHYSQGQVYLGNYPPFKDRISWAGD---LDKKDASINIENMQFIHNGTYICDVKN 139
Query: 112 VLGLGVGTGNGTRLVVEKEH 131
+ V G+ VVEKE+
Sbjct: 140 PPDIVVQPGHIRLYVVEKEN 159
>gi|226437599 V-set and transmembrane domain containing 2B [Homo
sapiens]
Length = 285
Score = 30.4 bits (67), Expect = 1.1
Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 9/102 (8%)
Query: 18 ALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGK---EVRNGTPEFR 74
A + P ++ EG +PC+F AS + W+ + P + E+ P R
Sbjct: 28 AAFTEVPKDVTVREGDDIEMPCAFRASGATSYSLEIQWWYLKEPPRELLHELALSVPGAR 87
Query: 75 GRLAPLASSRFL------HDHQAELHIRDVRGHDASIYVCRV 110
++ +++ +D L + VR D +Y CRV
Sbjct: 88 SKVTNKDATKISTVRVQGNDISHRLRLSAVRLQDEGVYECRV 129
>gi|239757226 PREDICTED: V-set and transmembrane domain containing
2B [Homo sapiens]
Length = 285
Score = 30.4 bits (67), Expect = 1.1
Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 9/102 (8%)
Query: 18 ALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGK---EVRNGTPEFR 74
A + P ++ EG +PC+F AS + W+ + P + E+ P R
Sbjct: 28 AAFTEVPKDVTVREGDDIEMPCAFRASGATSYSLEIQWWYLKEPPRELLHELALSVPGAR 87
Query: 75 GRLAPLASSRFL------HDHQAELHIRDVRGHDASIYVCRV 110
++ +++ +D L + VR D +Y CRV
Sbjct: 88 SKVTNKDATKISTVRVQGNDISHRLRLSAVRLQDEGVYECRV 129
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.140 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,737,972
Number of Sequences: 37866
Number of extensions: 478468
Number of successful extensions: 2580
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 2503
Number of HSP's gapped (non-prelim): 127
length of query: 201
length of database: 18,247,518
effective HSP length: 97
effective length of query: 104
effective length of database: 14,574,516
effective search space: 1515749664
effective search space used: 1515749664
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.