Guide to the Human Genome
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Name: PARP8 Sequence: fasta or formatted (854aa) NCBI GI: 24432009
Description:

poly (ADP-ribose) polymerase family, member 8

Referenced in:

polyADP-Ribose Polymerase Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         40           2
 C cysteine            2.6         22           2
 D aspartate           4.9         42           2
 E glutamate           6.6         56           2
 F phenylalanine       3.6         31           3
 G glycine             5.0         43           2
 H histidine           3.5         30           1
 I isoleucine          5.0         43           2
 K lysine              7.3         62           2
 L leucine             8.8         75           3
 M methionine          1.9         16           1
 N asparagine          4.3         37           1
 P proline             5.2         44           3
 Q glutamine           4.7         40           2
 R arginine            5.4         46           2
 S serine             11.2         96           6
 T threonine           5.3         45           2
 V valine              6.8         58           2
 W tryptophan          0.6          5           1
 Y tyrosine            2.7         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   poly (ADP-ribose) polymerase family, member 8 
PARP6                 0.327   poly (ADP-ribose) polymerase family, member 6 
PARP16                0.017   poly (ADP-ribose) polymerase family, member 16 [Homo...
PARP2                 0.009   poly (ADP-ribose) polymerase family, member 2 isofo...
PARP2                 0.009   poly (ADP-ribose) polymerase family, member 2 isofo...
PARP1                 0.006   poly (ADP-ribose) polymerase family, member 1 [Homo...
PARP3                 0.004   poly (ADP-ribose) polymerase family, member 3 isofo...
PARP3                 0.004   poly (ADP-ribose) polymerase family, member 3 isofo...
BRD2                  0.004   bromodomain containing 2 
BRD2                  0.004   bromodomain containing 2 
RBMS2                 0.004   RNA binding motif, single stranded interacting protei...
UNC13C                0.004   unc-13 homolog C 
ZBED1                 0.004   zinc finger, BED-type containing 1 
ANP32C                0.004   acidic nuclear phosphoprotein 32C 
ABCA5                 0.004   ATP-binding cassette, sub-family A , member 5 
ABCA5                 0.004   ATP-binding cassette, sub-family A , member 5 
PPFIBP1               0.004   PTPRF interacting protein binding protein 1 isoform ...
ZBTB11                0.004   zinc finger protein ZNF-U69274 
PTMA                  0.003   prothymosin, alpha isoform 1 
PTMA                  0.003   prothymosin, alpha isoform 2 
ADAMTS17              0.003   ADAM metallopeptidase with thrombospondin type 1 mo...
SPHKAP                0.003   sphingosine kinase type 1-interacting protein isofo...
SPHKAP                0.003   sphingosine kinase type 1-interacting protein isofo...
NARS                  0.003   asparaginyl-tRNA synthetase 
GPATCH8               0.003   G patch domain containing 8 
ANO8                  0.003   anoctamin 8 
CELSR1                0.003   cadherin EGF LAG seven-pass G-type receptor 1 
TRIP11                0.003   thyroid hormone receptor interactor 11 
DHX37                 0.003   DEAH (Asp-Glu-Ala-His) box polypeptide 37 
BDP1                  0.003   transcription factor-like nuclear regulator 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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