Guide to the Human Genome
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Name: TSPAN13 Sequence: fasta or formatted (204aa) NCBI GI: 7657373
Description:

tetraspan NET-6

Referenced in:

Integrins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         16           2
 C cysteine            5.9         12           2
 D aspartate           2.0          4           1
 E glutamate           2.5          5           1
 F phenylalanine       6.9         14           2
 G glycine             9.3         19           2
 H histidine           1.5          3           2
 I isoleucine          7.8         16           2
 K lysine              2.0          4           1
 L leucine            14.7         30           3
 M methionine          1.0          2           1
 N asparagine          5.9         12           2
 P proline             2.5          5           1
 Q glutamine           3.9          8           2
 R arginine            3.9          8           1
 S serine              6.9         14           2
 T threonine           2.5          5           1
 V valine              9.3         19           2
 W tryptophan          1.5          3           1
 Y tyrosine            2.5          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tetraspan NET-6 
TSPAN31               0.578   sarcoma amplified sequence 
CD63                  0.102   CD63 antigen isoform A 
CD63                  0.092   CD63 antigen isoform B 
TSPAN4                0.092   tetraspanin 4 isoform a 
TSPAN4                0.092   tetraspanin 4 isoform a 
TSPAN4                0.092   tetraspanin 4 isoform a 
TSPAN4                0.092   tetraspanin 4 isoform a 
TSPAN4                0.092   tetraspanin 4 isoform a 
TSPAN4                0.092   tetraspanin 4 isoform a 
CD151                 0.074   CD151 antigen 
CD151                 0.074   CD151 antigen 
CD151                 0.074   CD151 antigen 
CD151                 0.074   CD151 antigen 
CD53                  0.074   CD53 antigen 
CD53                  0.074   CD53 antigen 
TSPAN9                0.074   tetraspanin 9 
TSPAN12               0.069   transmembrane 4 superfamily member 12 
TSPAN8                0.069   transmembrane 4 superfamily member 3 
TSPAN14               0.066   tetraspanin 14 isoform 1 
TSPAN17               0.066   transmembrane 4 superfamily member 17 isoform b [Hom...
TSPAN17               0.066   transmembrane 4 superfamily member 17 isoform a [Hom...
TSPAN17               0.066   transmembrane 4 superfamily member 17 isoform c [Hom...
TSPAN3                0.064   transmembrane 4 superfamily member 8 isoform 1 
TSPAN5                0.061   transmembrane 4 superfamily member 9 
TSPAN18               0.056   tetraspanin 18 isoform 1 
TSPAN18               0.056   tetraspanin 18 isoform 2 
CD9                   0.056   CD9 antigen 
TSPAN33               0.056   tetraspanin 33 
TSPAN7                0.054   tetraspanin 7 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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