Guide to the Human Genome
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Name: SLFN12L Sequence: fasta or formatted (617aa) NCBI GI: 222537745
Description:

schlafen family member 12-like

Referenced in:

T cells

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         32           2
 C cysteine            3.4         21           2
 D aspartate           3.7         23           1
 E glutamate           7.6         47           2
 F phenylalanine       6.3         39           2
 G glycine             5.3         33           3
 H histidine           1.8         11           2
 I isoleucine          4.7         29           1
 K lysine              8.8         54           2
 L leucine            10.4         64           2
 M methionine          2.4         15           1
 N asparagine          5.3         33           2
 P proline             3.4         21           2
 Q glutamine           4.1         25           2
 R arginine            4.1         25           1
 S serine              7.0         43           3
 T threonine           4.9         30           2
 V valine              6.5         40           1
 W tryptophan          1.0          6           1
 Y tyrosine            4.2         26           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   schlafen family member 12-like 
SLFN12                0.663   schlafen family member 12 
SLFN5                 0.338   schlafen family member 5 
SLFN14                0.323   schlafen family member 14 
SLFN13                0.281   schlafen family member 13 
SLFN11                0.261   schlafen family member 11 
SLFN11                0.261   schlafen family member 11 
SLFN11                0.261   schlafen family member 11 
SLFN11                0.261   schlafen family member 11 
SLFN11                0.261   schlafen family member 11 
SLFNL1                0.006   schlafen-like 1 
CCDC65                0.006   coiled-coil domain containing 65 
TTL                   0.006   tubulin tyrosine ligase 
TRUB2                 0.006   TruB pseudouridine (psi) synthase homolog 2 
UBE2Q2                0.004   ubiquitin-conjugating enzyme E2Q 2 isoform 1 
WDR35                 0.004   WD repeat domain 35 isoform 2 
STAC                  0.004   SH3 and cysteine rich domain 
WDR35                 0.004   WD repeat domain 35 isoform 1 
CHRNA9                0.004   cholinergic receptor, nicotinic, alpha 9 precursor [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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