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Search of human proteins with 24308390
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|24308390 tRNA splicing endonuclease 15 isoform 1 [Homo
sapiens]
(171 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24308390 tRNA splicing endonuclease 15 isoform 1 [Homo sapiens] 354 2e-98
gi|188528677 tRNA splicing endonuclease 15 isoform 2 [Homo sapiens] 253 6e-68
gi|88501738 TRIO and F-actin binding protein isoform 6 [Homo sap... 35 0.041
gi|53829365 potassium channel tetramerisation domain containing ... 31 0.46
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 29 1.7
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 29 1.7
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 29 1.7
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 29 1.7
gi|50345997 E1A binding protein p300 [Homo sapiens] 29 2.3
gi|4885597 sine oculis homeobox homolog 3 [Homo sapiens] 28 3.0
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 28 3.0
gi|4758062 cytokine receptor-like factor 1 [Homo sapiens] 28 3.9
gi|7706621 T-cell leukemia homeobox 2 [Homo sapiens] 28 3.9
gi|119395750 keratin 1 [Homo sapiens] 28 5.0
gi|119943102 CREB binding protein isoform b [Homo sapiens] 28 5.0
gi|119943104 CREB binding protein isoform a [Homo sapiens] 28 5.0
gi|5174703 mitogen-activated protein kinase kinase kinase 7 inte... 28 5.0
gi|41281798 mitogen-activated protein kinase kinase kinase 7 int... 28 5.0
gi|38158022 DEAH (Asp-Glu-Ala-His) box polypeptide 34 [Homo sapi... 28 5.0
gi|239754512 PREDICTED: hypothetical protein [Homo sapiens] 27 6.6
gi|239753335 PREDICTED: hypothetical protein [Homo sapiens] 27 6.6
gi|239751010 PREDICTED: hypothetical protein [Homo sapiens] 27 6.6
gi|239749073 PREDICTED: hypothetical protein [Homo sapiens] 27 6.6
gi|239743099 PREDICTED: hypothetical protein XP_002342754 [Homo ... 27 6.6
gi|239508751 PREDICTED: hypothetical protein [Homo sapiens] 27 6.6
gi|7710145 methyl-CpG binding domain protein 2 testis-specific i... 27 6.6
gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo s... 27 6.6
gi|150378447 zinc and ring finger 3 [Homo sapiens] 27 6.6
gi|51093859 calcium channel, voltage-dependent, T type, alpha 1I... 27 6.6
gi|21361077 calcium channel, voltage-dependent, T type, alpha 1I... 27 6.6
>gi|24308390 tRNA splicing endonuclease 15 isoform 1 [Homo sapiens]
Length = 171
Score = 354 bits (908), Expect = 2e-98
Identities = 171/171 (100%), Positives = 171/171 (100%)
Query: 1 MEERGDSEPTPGCSGLGPGGVRGFGDGGGAPSWAPEDAWMGTHPKYLEMMELDIGDATQV 60
MEERGDSEPTPGCSGLGPGGVRGFGDGGGAPSWAPEDAWMGTHPKYLEMMELDIGDATQV
Sbjct: 1 MEERGDSEPTPGCSGLGPGGVRGFGDGGGAPSWAPEDAWMGTHPKYLEMMELDIGDATQV 60
Query: 61 YVAFLVYLDLMESKSWHEVNCVGLPELQLICLVGTEIEGEGLQTVVPTPITASLSHNRIR 120
YVAFLVYLDLMESKSWHEVNCVGLPELQLICLVGTEIEGEGLQTVVPTPITASLSHNRIR
Sbjct: 61 YVAFLVYLDLMESKSWHEVNCVGLPELQLICLVGTEIEGEGLQTVVPTPITASLSHNRIR 120
Query: 121 EILKASRKLQGDPDLPMSFTLAIVESDSTIVYYKLTDGFMLPDPQNISLRR 171
EILKASRKLQGDPDLPMSFTLAIVESDSTIVYYKLTDGFMLPDPQNISLRR
Sbjct: 121 EILKASRKLQGDPDLPMSFTLAIVESDSTIVYYKLTDGFMLPDPQNISLRR 171
>gi|188528677 tRNA splicing endonuclease 15 isoform 2 [Homo sapiens]
Length = 129
Score = 253 bits (646), Expect = 6e-68
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 MEERGDSEPTPGCSGLGPGGVRGFGDGGGAPSWAPEDAWMGTHPKYLEMMELDIGDATQV 60
MEERGDSEPTPGCSGLGPGGVRGFGDGGGAPSWAPEDAWMGTHPKYLEMMELDIGDATQV
Sbjct: 1 MEERGDSEPTPGCSGLGPGGVRGFGDGGGAPSWAPEDAWMGTHPKYLEMMELDIGDATQV 60
Query: 61 YVAFLVYLDLMESKSWHEVNCVGLPELQLICLVGTEIEGEGLQTVVPTPITASLSHNRI 119
YVAFLVYLDLMESKSWHEVNCVGLPELQLICLVGTEIEGEGLQTVVPTPITASLSHNRI
Sbjct: 61 YVAFLVYLDLMESKSWHEVNCVGLPELQLICLVGTEIEGEGLQTVVPTPITASLSHNRI 119
>gi|88501738 TRIO and F-actin binding protein isoform 6 [Homo sapiens]
Length = 2365
Score = 34.7 bits (78), Expect = 0.041
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 15 GLGPGGVRGFGDGGGAPSWAPEDAWMGTHPKYLE 48
GLGPGG G G+ + APE AW GT +Y E
Sbjct: 1453 GLGPGGWWGCGEPSLGAAKAPEGAWGGTSREYKE 1486
>gi|53829365 potassium channel tetramerisation domain containing 2
[Homo sapiens]
Length = 263
Score = 31.2 bits (69), Expect = 0.46
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 11 PGCSGLGPGGVRGFGDGGGAPSWAPEDAWMGTHPK 45
P +GLG GG G GDGGG P G P+
Sbjct: 8 PAMAGLGGGGGSGVGDGGGPVRGPPSPRPAGPTPR 42
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 29.3 bits (64), Expect = 1.7
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 7 SEPTPGCSGLGPGGVRGFGDGGGAPSWAPEDAWMGTHPKYLEMMELDIGDATQV 60
+E G SG GPGG G G GGA + A DA +G + L ++ T V
Sbjct: 779 AEGAAGGSGGGPGGAEGGGVTGGARA-ALSDAELGRWAELLSPLDESRASITSV 831
Score = 27.7 bits (60), Expect = 5.0
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 6 DSEPTPGCSGLGPGGVRGFGDGGGAPSWAPEDAWMGTHP 44
D P+PG SG G G G GA S +P+ A +G P
Sbjct: 723 DPGPSPGTSG----GKAAAGAGAGASSRSPKQARLGELP 757
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapiens]
Length = 1124
Score = 29.3 bits (64), Expect = 1.7
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 7 SEPTPGCSGLGPGGVRGFGDGGGAPSWAPEDAWMGTHPKYLEMMELDIGDATQV 60
+E G SG GPGG G G GGA + A DA +G + L ++ T V
Sbjct: 1048 AEGAAGGSGGGPGGAEGGGVTGGARA-ALSDAELGRWAELLSPLDESRASITSV 1100
Score = 27.7 bits (60), Expect = 5.0
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 6 DSEPTPGCSGLGPGGVRGFGDGGGAPSWAPEDAWMGTHP 44
D P+PG SG G G G GA S +P+ A +G P
Sbjct: 992 DPGPSPGTSG----GKAAAGAGAGASSRSPKQARLGELP 1026
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 29.3 bits (64), Expect = 1.7
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 7 SEPTPGCSGLGPGGVRGFGDGGGAPSWAPEDAWMGTHPKYLEMMELDIGDATQV 60
+E G SG GPGG G G GGA + A DA +G + L ++ T V
Sbjct: 740 AEGAAGGSGGGPGGAEGGGVTGGARA-ALSDAELGRWAELLSPLDESRASITSV 792
Score = 27.7 bits (60), Expect = 5.0
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 6 DSEPTPGCSGLGPGGVRGFGDGGGAPSWAPEDAWMGTHP 44
D P+PG SG G G G GA S +P+ A +G P
Sbjct: 684 DPGPSPGTSG----GKAAAGAGAGASSRSPKQARLGELP 718
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 29.3 bits (64), Expect = 1.7
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 22 RGFGDGGGAPSWAPEDAWMGTH 43
RG G GGGAP+W P A H
Sbjct: 515 RGAGRGGGAPAWQPASAPPAPH 536
>gi|50345997 E1A binding protein p300 [Homo sapiens]
Length = 2414
Score = 28.9 bits (63), Expect = 2.3
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 102 LQTVVPTPITASLSHNRIREILKASRKLQGD 132
+Q + PTP A+L R+ ++ +RK++GD
Sbjct: 588 VQAIFPTPDPAALKDRRMENLVAYARKVEGD 618
>gi|4885597 sine oculis homeobox homolog 3 [Homo sapiens]
Length = 332
Score = 28.5 bits (62), Expect = 3.0
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 8/41 (19%)
Query: 12 GCSGLGPGGVRGFGDGGGAPSWAPEDAWMGTHPKYLEMMEL 52
G +G G GG G G GGG S AP P+ L M +L
Sbjct: 50 GGNGAGGGGAGGAGGGGGGGSRAP--------PEELSMFQL 82
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 28.5 bits (62), Expect = 3.0
Identities = 13/25 (52%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 15 GLGPGGVRGFGDGGGAPSWAPEDAW 39
G G GG G G GG P W P AW
Sbjct: 432 GGGSGGGGGVGGAGGGP-WGPAPAW 455
>gi|4758062 cytokine receptor-like factor 1 [Homo sapiens]
Length = 422
Score = 28.1 bits (61), Expect = 3.9
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 84 LPELQLICLVGTEIEGEGLQTVVPTPITASLSHNRIREILKASRKLQGDP 133
LP L L+C++G G G T V +P +L I L A+ + GDP
Sbjct: 20 LPLLLLLCVLGAPRAGSGAHTAVISPQDPTL---LIGSSLLATCSVHGDP 66
>gi|7706621 T-cell leukemia homeobox 2 [Homo sapiens]
Length = 284
Score = 28.1 bits (61), Expect = 3.9
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 5 GDSEPTPGCSGLGPGGV 21
G P PG SG+GPGGV
Sbjct: 64 GSLAPLPGSSGVGPGGV 80
>gi|119395750 keratin 1 [Homo sapiens]
Length = 644
Score = 27.7 bits (60), Expect = 5.0
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 12 GCSGLGPGGVRGFGDGGG 29
G G+G GG GFG GGG
Sbjct: 110 GGGGIGGGGFGGFGSGGG 127
>gi|119943102 CREB binding protein isoform b [Homo sapiens]
Length = 2404
Score = 27.7 bits (60), Expect = 5.0
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 102 LQTVVPTPITASLSHNRIREILKASRKLQGD 132
+Q + PTP A+L R+ ++ ++K++GD
Sbjct: 571 VQAIFPTPDPAALKDRRMENLVAYAKKVEGD 601
>gi|119943104 CREB binding protein isoform a [Homo sapiens]
Length = 2442
Score = 27.7 bits (60), Expect = 5.0
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 102 LQTVVPTPITASLSHNRIREILKASRKLQGD 132
+Q + PTP A+L R+ ++ ++K++GD
Sbjct: 609 VQAIFPTPDPAALKDRRMENLVAYAKKVEGD 639
>gi|5174703 mitogen-activated protein kinase kinase kinase 7
interacting protein 1 isoform alpha [Homo sapiens]
Length = 504
Score = 27.7 bits (60), Expect = 5.0
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 6 DSEPTPGCSGLGPGGVRGFG-DGGGAPSWAPEDAWM 40
D P SG+G R + DG G S PED+W+
Sbjct: 19 DDLPLCHLSGVGSASNRSYSADGKGTESHPPEDSWL 54
>gi|41281798 mitogen-activated protein kinase kinase kinase 7
interacting protein 1 isoform beta [Homo sapiens]
Length = 462
Score = 27.7 bits (60), Expect = 5.0
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 6 DSEPTPGCSGLGPGGVRGFG-DGGGAPSWAPEDAWM 40
D P SG+G R + DG G S PED+W+
Sbjct: 19 DDLPLCHLSGVGSASNRSYSADGKGTESHPPEDSWL 54
>gi|38158022 DEAH (Asp-Glu-Ala-His) box polypeptide 34 [Homo
sapiens]
Length = 1143
Score = 27.7 bits (60), Expect = 5.0
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 65 LVYLDLMESKSWHEVNCVGLPELQLICLVGTEIEGEG 101
L ++ L+E+ + VNCV +P LQ + L ++ G
Sbjct: 879 LSFVSLLETNKPYLVNCVRIPALQSLLLFSRSLDTNG 915
>gi|239754512 PREDICTED: hypothetical protein [Homo sapiens]
Length = 556
Score = 27.3 bits (59), Expect = 6.6
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 80 NCVGLPELQLICLVG----TEIEGEGLQTVVPTPITASLSHNRIREILKASRKLQGDP 133
N GL +++L+CLVG G + V P P + S RIR R QG P
Sbjct: 310 NLRGLGKVRLLCLVGELPVNNPCGPRERRVYPRPPSKSQIQRRIRPKRSRRRPYQGTP 367
>gi|239753335 PREDICTED: hypothetical protein [Homo sapiens]
Length = 113
Score = 27.3 bits (59), Expect = 6.6
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 5 GDSEPTPGCSGLGPGGVRGFGDGGGAPSWAPEDAWM 40
GD P +G PGG RG G GG P AW+
Sbjct: 74 GDGGGLPRRAGAEPGG-RGGGSGGTMPGGRRAAAWL 108
>gi|239751010 PREDICTED: hypothetical protein [Homo sapiens]
Length = 220
Score = 27.3 bits (59), Expect = 6.6
Identities = 14/34 (41%), Positives = 14/34 (41%)
Query: 11 PGCSGLGPGGVRGFGDGGGAPSWAPEDAWMGTHP 44
PG S GG G G GGGA W G P
Sbjct: 81 PGDSSHSRGGRWGVGGGGGAALWRQRTVEAGCSP 114
>gi|239749073 PREDICTED: hypothetical protein [Homo sapiens]
Length = 884
Score = 27.3 bits (59), Expect = 6.6
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 80 NCVGLPELQLICLVG----TEIEGEGLQTVVPTPITASLSHNRIREILKASRKLQGDP 133
N GL +++L+CLVG G + V P P + S RIR R QG P
Sbjct: 638 NLRGLGKVRLLCLVGELPVNNPCGPRERRVYPRPPSKSQIQRRIRPKRSRRRPYQGTP 695
>gi|239743099 PREDICTED: hypothetical protein XP_002342754 [Homo
sapiens]
Length = 884
Score = 27.3 bits (59), Expect = 6.6
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 80 NCVGLPELQLICLVG----TEIEGEGLQTVVPTPITASLSHNRIREILKASRKLQGDP 133
N GL +++L+CLVG G + V P P + S RIR R QG P
Sbjct: 638 NLRGLGKVRLLCLVGELPVNNPCGPRERRVYPRPPSKSQIQRRIRPKRSRRRPYQGTP 695
>gi|239508751 PREDICTED: hypothetical protein [Homo sapiens]
Length = 884
Score = 27.3 bits (59), Expect = 6.6
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 80 NCVGLPELQLICLVG----TEIEGEGLQTVVPTPITASLSHNRIREILKASRKLQGDP 133
N GL +++L+CLVG G + V P P + S RIR R QG P
Sbjct: 638 NLRGLGKVRLLCLVGELPVNNPCGPRERRVYPRPPSKSQIQRRIRPKRSRRRPYQGTP 695
>gi|7710145 methyl-CpG binding domain protein 2 testis-specific
isoform [Homo sapiens]
Length = 302
Score = 27.3 bits (59), Expect = 6.6
Identities = 18/35 (51%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 4 RGDSEPTPGCSGLG--PGGVRGFGD-GGGAPSWAP 35
RG P G SGLG GG G G GGGAP P
Sbjct: 92 RGRGRPPSGGSGLGGDGGGCGGGGSGGGGAPRREP 126
>gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo
sapiens]
Length = 411
Score = 27.3 bits (59), Expect = 6.6
Identities = 18/35 (51%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 4 RGDSEPTPGCSGLG--PGGVRGFGD-GGGAPSWAP 35
RG P G SGLG GG G G GGGAP P
Sbjct: 92 RGRGRPPSGGSGLGGDGGGCGGGGSGGGGAPRREP 126
>gi|150378447 zinc and ring finger 3 [Homo sapiens]
Length = 836
Score = 27.3 bits (59), Expect = 6.6
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 9 PTPGCSG-----LGPGGVRGFGDGGGAPSWAPEDAWMGTHPKYL 47
P+ G +G LGP G G GG P G HP +L
Sbjct: 623 PSAGAAGSSTLFLGPHLYEGSGPAGGEPQSGSSQGLYGLHPDHL 666
>gi|51093859 calcium channel, voltage-dependent, T type, alpha 1I
subunit isoform b [Homo sapiens]
Length = 2188
Score = 27.3 bits (59), Expect = 6.6
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 10 TPGCSGLGPGGVRGFGDGGG-----APSWAPEDAWM 40
+PG G GPGG G GD G S A E+ W+
Sbjct: 1733 SPGAPGRGPGGAGGGGDTEGGLCRRCYSPAQENLWL 1768
>gi|21361077 calcium channel, voltage-dependent, T type, alpha 1I
subunit isoform a [Homo sapiens]
Length = 2223
Score = 27.3 bits (59), Expect = 6.6
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 10 TPGCSGLGPGGVRGFGDGGG-----APSWAPEDAWM 40
+PG G GPGG G GD G S A E+ W+
Sbjct: 1768 SPGAPGRGPGGAGGGGDTEGGLCRRCYSPAQENLWL 1803
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.138 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,850,788
Number of Sequences: 37866
Number of extensions: 387866
Number of successful extensions: 1837
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1797
Number of HSP's gapped (non-prelim): 61
length of query: 171
length of database: 18,247,518
effective HSP length: 95
effective length of query: 76
effective length of database: 14,650,248
effective search space: 1113418848
effective search space used: 1113418848
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.