Guide to the Human Genome
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Name: C2orf86 Sequence: fasta or formatted (746aa) NCBI GI: 111548652
Description:

hypothetical protein LOC51057 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {587aa} hypothetical protein LOC51057 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         40           2
 C cysteine            2.7         20           2
 D aspartate           6.7         50           2
 E glutamate           6.6         49           2
 F phenylalanine       4.0         30           2
 G glycine             5.1         38           2
 H histidine           2.4         18           2
 I isoleucine          6.7         50           2
 K lysine              5.2         39           2
 L leucine            13.5        101           4
 M methionine          1.7         13           1
 N asparagine          3.4         25           1
 P proline             4.2         31           2
 Q glutamine           4.6         34           2
 R arginine            6.6         49           2
 S serine              8.4         63           3
 T threonine           3.9         29           2
 V valine              4.7         35           2
 W tryptophan          1.5         11           2
 Y tyrosine            2.8         21           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC51057 isoform 2 
C2orf86               0.771   hypothetical protein LOC51057 isoform 1 
CSTF1                 0.006   cleavage stimulation factor subunit 1 
CSTF1                 0.006   cleavage stimulation factor subunit 1 
CSTF1                 0.006   cleavage stimulation factor subunit 1 
GRPEL1                0.006   GrpE-like 1, mitochondrial 
NEDD1                 0.005   neural precursor cell expressed, developmentally do...
NEDD1                 0.005   neural precursor cell expressed, developmentally do...
NEDD1                 0.005   neural precursor cell expressed, developmentally dow...
NEDD1                 0.005   neural precursor cell expressed, developmentally do...
TTC23L                0.005   tetratricopeptide repeat domain 23-like 
OAS2                  0.005   2'-5'-oligoadenylate synthetase 2 isoform 2 
OAS2                  0.005   2'-5'-oligoadenylate synthetase 2 isoform 1 
PRKCA                 0.004   protein kinase C, alpha 
RNF128                0.004   ring finger protein 128 isoform 1 
MACF1                 0.004   microfilament and actin filament cross-linker protei...
MACF1                 0.004   microfilament and actin filament cross-linker protei...
ITGB4                 0.004   integrin beta 4 isoform 2 precursor 
ITGB4                 0.004   integrin beta 4 isoform 1 precursor 
ITGB4                 0.004   integrin beta 4 isoform 3 precursor 
EML6                  0.003   echinoderm microtubule associated protein like 6 [H...
DST                   0.003   dystonin isoform 4 
DST                   0.003   dystonin isoform 3 
DST                   0.003   dystonin isoform 2 
DST                   0.003   dystonin isoform 1 
DST                   0.003   dystonin isoform 1eA precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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