Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: C16orf75 Sequence: fasta or formatted (147aa) NCBI GI: 24308245
Description:

RecQ-mediated genome instability protein 2

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.6         17           4
 C cysteine            2.0          3           1
 D aspartate           6.1          9           1
 E glutamate           6.1          9           1
 F phenylalanine       1.4          2           1
 G glycine            10.2         15           2
 H histidine           1.4          2           1
 I isoleucine          1.4          2           1
 K lysine              2.0          3           1
 L leucine             9.5         14           1
 M methionine          4.8          7           1
 N asparagine          1.4          2           1
 P proline             9.5         14           2
 Q glutamine           2.7          4           1
 R arginine           10.9         16           2
 S serine              6.1          9           1
 T threonine           0.7          1           1
 V valine              9.5         14           2
 W tryptophan          2.0          3           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RecQ-mediated genome instability protein 2 
LOC100292754          0.029   PREDICTED: hypothetical protein 
LOC100290764          0.029   PREDICTED: hypothetical protein XP_002346421 
LOC100287607          0.029   PREDICTED: hypothetical protein XP_002342119 
LOC100294067          0.018   PREDICTED: similar to rCG47812 
MEPCE                 0.018   bin3, bicoid-interacting 3 
STRN4                 0.018   zinedin isoform 2 
STRN4                 0.018   zinedin isoform 1 
LOC100292196          0.014   PREDICTED: hypothetical protein 
C14orf80              0.014   hypothetical protein LOC283643 isoform 4 
C14orf80              0.014   hypothetical protein LOC283643 isoform 2 
C14orf80              0.014   hypothetical protein LOC283643 isoform 1 
C2orf16               0.014   hypothetical protein LOC84226 
GRIP2                 0.011   glutamate receptor interacting protein 2 
C2orf21               0.011   chromosome 2 open reading frame 21 isoform 1 
KIAA1949              0.011   phostensin 
KIAA1949              0.011   phostensin 
AGPAT2                0.011   1-acylglycerol-3-phosphate O-acyltransferase 2 isofo...
AGPAT2                0.011   1-acylglycerol-3-phosphate O-acyltransferase 2 isofor...
ASPHD1                0.011   aspartate beta-hydroxylase domain containing 1 [Homo...
IER5                  0.007   immediate early response 5 
LOC100292292          0.007   PREDICTED: hypothetical protein 
C18orf51              0.007   hypothetical protein LOC125704 
TIE1                  0.007   tyrosine kinase with immunoglobulin-like and EGF-like...
ALPK3                 0.007   alpha-kinase 3 
KBTBD11               0.007   kelch repeat and BTB (POZ) domain containing 11 [Homo...
LOC100292234          0.007   PREDICTED: hypothetical protein 
LOC100289952          0.007   PREDICTED: hypothetical protein XP_002348279 
LOC100289949          0.007   PREDICTED: hypothetical protein XP_002346877 
LOC100290708          0.007   PREDICTED: hypothetical protein XP_002346660 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press