Guide to the Human Genome
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Name: LOC100287607 Sequence: fasta or formatted (347aa) NCBI GI: 239741144
Description:

PREDICTED: hypothetical protein XP_002342119

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.2         39           3
 C cysteine            2.9         10           1
 D aspartate           2.6          9           1
 E glutamate           4.0         14           2
 F phenylalanine       2.6          9           1
 G glycine            11.5         40           3
 H histidine           3.7         13           2
 I isoleucine          1.2          4           1
 K lysine              0.9          3           1
 L leucine             9.8         34           2
 M methionine          1.2          4           1
 N asparagine          0.9          3           1
 P proline            11.8         41           3
 Q glutamine           9.5         33           3
 R arginine           11.2         39           3
 S serine              4.9         17           1
 T threonine           3.2         11           1
 V valine              6.1         21           3
 W tryptophan          0.3          1           1
 Y tyrosine            0.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342119 
LOC100292754          0.997   PREDICTED: hypothetical protein 
LOC100290764          0.997   PREDICTED: hypothetical protein XP_002346421 
SF3B4                 0.040   splicing factor 3b, subunit 4 
ARID1B                0.036   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.036   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
LOC100293652          0.032   PREDICTED: hypothetical protein 
LOC100291016          0.032   PREDICTED: hypothetical protein XP_002347804 
LOC100287809          0.032   PREDICTED: hypothetical protein XP_002343597 
PCLO                  0.029   piccolo isoform 2 
PCLO                  0.029   piccolo isoform 1 
PLEKHA4               0.027   pleckstrin homology domain containing family A memb...
PLEKHA4               0.027   pleckstrin homology domain containing family A memb...
OGFR                  0.027   opioid growth factor receptor 
SRRM1                 0.027   serine/arginine repetitive matrix 1 
AKNA                  0.027   AT-hook transcription factor 
ARID1A                0.026   AT rich interactive domain 1A isoform a 
ARID1A                0.026   AT rich interactive domain 1A isoform b 
FLJ31945              0.025   PREDICTED: hypothetical protein 
FLJ31945              0.025   PREDICTED: hypothetical protein 
COL22A1               0.025   collagen, type XXII, alpha 1 
DCAF10                0.023   WD repeat domain 32 
COL1A1                0.022   alpha 1 type I collagen preproprotein 
LOC100291797          0.022   PREDICTED: hypothetical protein XP_002345651 
LOC100291443          0.022   PREDICTED: hypothetical protein XP_002346504 
LOC100289394          0.022   PREDICTED: hypothetical protein XP_002342316 
BCL9                  0.022   B-cell CLL/lymphoma 9 
COL2A1                0.020   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.020   collagen, type II, alpha 1 isoform 2 precursor [Hom...
LOC100293268          0.020   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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