Guide to the Human Genome
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Name: C14orf80 Sequence: fasta or formatted (393aa) NCBI GI: 199560438
Description:

hypothetical protein LOC283643 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {426aa} hypothetical protein LOC283643 isoform 1
alt prot {352aa} hypothetical protein LOC283643 isoform 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.0         55           3
 C cysteine            2.3          9           1
 D aspartate           2.8         11           1
 E glutamate           8.9         35           3
 F phenylalanine       1.5          6           1
 G glycine             7.9         31           3
 H histidine           1.0          4           1
 I isoleucine          1.3          5           1
 K lysine              1.5          6           1
 L leucine            13.7         54           3
 M methionine          1.5          6           1
 N asparagine          0.5          2           1
 P proline             7.9         31           3
 Q glutamine           6.1         24           2
 R arginine           12.5         49           3
 S serine              5.3         21           2
 T threonine           1.8          7           1
 V valine              6.1         24           2
 W tryptophan          3.1         12           1
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC283643 isoform 2 
C14orf80              0.978   hypothetical protein LOC283643 isoform 1 
C14orf80              0.877   hypothetical protein LOC283643 isoform 4 
SYNM                  0.021   desmuslin isoform B 
SYNM                  0.021   desmuslin isoform A 
GIGYF2                0.020   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.020   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.020   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.020   GRB10 interacting GYF protein 2 isoform b 
CLIC6                 0.016   chloride intracellular channel 6 
LOC100129531          0.014   PREDICTED: hypothetical protein 
LOC100129531          0.014   PREDICTED: hypothetical protein 
SPEG                  0.013   SPEG complex locus 
AFAP1                 0.012   actin filament associated protein 1 isoform a [Homo...
AFAP1                 0.012   actin filament associated protein 1 
FAM109B               0.010   hypothetical protein LOC150368 
ANKRD11               0.010   ankyrin repeat domain 11 
CCDC102A              0.009   coiled-coil domain containing 102A 
LOC100128398          0.009   PREDICTED: hypothetical protein 
LOC100128398          0.009   PREDICTED: hypothetical protein 
LOC100128398          0.009   PREDICTED: hypothetical protein 
KIAA1602              0.009   hypothetical protein LOC57701 
ZNF598                0.009   zinc finger protein 598 
CEP250                0.009   centrosomal protein 2 
FYCO1                 0.008   FYVE and coiled-coil domain containing 1 
MYH7B                 0.008   myosin, heavy polypeptide 7B, cardiac muscle, beta ...
BRD1                  0.008   bromodomain containing protein 1 
SYNE1                 0.008   spectrin repeat containing, nuclear envelope 1 isofo...
SYNE1                 0.008   spectrin repeat containing, nuclear envelope 1 isof...
MRM1                  0.008   mitochondrial rRNA methyltransferase 1 homolog [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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