Guide to the Human Genome
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Name: C18orf51 Sequence: fasta or formatted (419aa) NCBI GI: 195546915
Description:

hypothetical protein LOC125704

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0         46           3
 C cysteine            3.8         16           1
 D aspartate           5.3         22           1
 E glutamate           6.4         27           3
 F phenylalanine       5.3         22           2
 G glycine             8.1         34           3
 H histidine           2.4         10           2
 I isoleucine          2.1          9           1
 K lysine              3.3         14           2
 L leucine            13.1         55           3
 M methionine          1.4          6           1
 N asparagine          2.6         11           3
 P proline             4.8         20           2
 Q glutamine           5.0         21           2
 R arginine            7.6         32           3
 S serine              6.7         28           2
 T threonine           1.9          8           1
 V valine              5.5         23           2
 W tryptophan          2.4         10           2
 Y tyrosine            1.2          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC125704 
FAM69B                0.075   hypothetical protein LOC138311 
FAM69A                0.066   family with sequence similarity 69, member A 
C3orf58               0.016   hypothetical protein LOC205428 isoform b 
C3orf58               0.016   hypothetical protein LOC205428 isoform a 
SLU7                  0.007   step II splicing factor SLU7 
CDK4                  0.007   cyclin-dependent kinase 4 
SPSB2                 0.006   splA/ryanodine receptor domain and SOCS box contain...
SPSB2                 0.006   splA/ryanodine receptor domain and SOCS box contain...
SPSB2                 0.006   splA/ryanodine receptor domain and SOCS box containi...
CXorf36               0.006   hypothetical protein LOC79742 isoform 1 
SAMD14                0.005   sterile alpha motif domain containing 14 
VGLL2                 0.005   vestigial-like 2 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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