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Search of human proteins with 24307983
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|24307983 FtsJ methyltransferase domain containing 2 [Homo
sapiens]
(835 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24307983 FtsJ methyltransferase domain containing 2 [Homo sap... 1693 0.0
gi|153792086 FtsJ methyltransferase domain containing 1 [Homo sa... 94 5e-19
gi|153791865 FtsJ methyltransferase domain containing 1 [Homo sa... 94 5e-19
gi|29029591 FtsJ homolog 1 isoform b [Homo sapiens] 50 7e-06
gi|29029589 FtsJ homolog 1 isoform b [Homo sapiens] 50 7e-06
gi|7110661 FtsJ homolog 1 isoform a [Homo sapiens] 49 3e-05
gi|56788356 tuftelin interacting protein 11 [Homo sapiens] 42 0.002
gi|8393259 tuftelin interacting protein 11 [Homo sapiens] 42 0.002
gi|224549005 RNA binding motif protein 17 [Homo sapiens] 40 0.007
gi|14249678 RNA binding motif protein 17 [Homo sapiens] 40 0.007
gi|21040326 SON DNA-binding protein isoform F [Homo sapiens] 40 0.012
gi|148747556 PIN2-interacting protein 1 [Homo sapiens] 39 0.015
gi|133925795 zinc finger, CCCH-type with G patch domain isoform ... 39 0.020
gi|133925791 zinc finger, CCCH-type with G patch domain isoform ... 39 0.020
gi|39725952 angiogenic factor VG5Q [Homo sapiens] 39 0.026
gi|33469964 splicing factor 4 [Homo sapiens] 38 0.034
gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens] 37 0.099
gi|4504063 golgin 97 [Homo sapiens] 36 0.13
gi|4507255 signal transducer and activator of transcription 4 [H... 36 0.17
gi|8923106 zinc finger, CCHC domain containing 10 [Homo sapiens] 36 0.17
gi|153945765 mitogen-activated protein kinase kinase kinase 1 [H... 35 0.22
gi|5032031 RNA binding motif protein 5 [Homo sapiens] 35 0.29
gi|133925793 zinc finger, CCCH-type with G patch domain isoform ... 35 0.29
gi|20127479 RNA binding motif protein 10 isoform 1 [Homo sapiens] 35 0.38
gi|23111018 RNA binding motif protein 10 isoform 2 [Homo sapiens] 35 0.38
gi|63003897 transcription factor NRF [Homo sapiens] 33 1.1
gi|194097365 FtsJ homolog 3 [Homo sapiens] 33 1.1
gi|8922313 G patch domain containing 2 [Homo sapiens] 33 1.4
gi|47834348 minor histocompatibility antigen HA-1 [Homo sapiens] 32 2.4
gi|205277458 G patch domain containing 3 [Homo sapiens] 32 2.4
>gi|24307983 FtsJ methyltransferase domain containing 2 [Homo
sapiens]
Length = 835
Score = 1693 bits (4384), Expect = 0.0
Identities = 835/835 (100%), Positives = 835/835 (100%)
Query: 1 MKRRTDPECTAPIKKQKKRVAELALSLSSTSDDEPPSSVSHGAKASTTSLSGSDSETEGK 60
MKRRTDPECTAPIKKQKKRVAELALSLSSTSDDEPPSSVSHGAKASTTSLSGSDSETEGK
Sbjct: 1 MKRRTDPECTAPIKKQKKRVAELALSLSSTSDDEPPSSVSHGAKASTTSLSGSDSETEGK 60
Query: 61 QHSSDSFDDAFKADSLVEGTSSRYSMYNSVSQKLMAKMGFREGEGLGKYSQGRKDIVEAS 120
QHSSDSFDDAFKADSLVEGTSSRYSMYNSVSQKLMAKMGFREGEGLGKYSQGRKDIVEAS
Sbjct: 61 QHSSDSFDDAFKADSLVEGTSSRYSMYNSVSQKLMAKMGFREGEGLGKYSQGRKDIVEAS 120
Query: 121 SQKGRRGLGLTLRGFDQELNVDWRDEPEPSACEQVSWFPECTTEIPDTQEMSDWMVVGKR 180
SQKGRRGLGLTLRGFDQELNVDWRDEPEPSACEQVSWFPECTTEIPDTQEMSDWMVVGKR
Sbjct: 121 SQKGRRGLGLTLRGFDQELNVDWRDEPEPSACEQVSWFPECTTEIPDTQEMSDWMVVGKR 180
Query: 181 KMIIEDETEFCGEELLHSVLQCKSVFDVLDGEEMRRARTRANPYEMIRGVFFLNRAAMKM 240
KMIIEDETEFCGEELLHSVLQCKSVFDVLDGEEMRRARTRANPYEMIRGVFFLNRAAMKM
Sbjct: 181 KMIIEDETEFCGEELLHSVLQCKSVFDVLDGEEMRRARTRANPYEMIRGVFFLNRAAMKM 240
Query: 241 ANMDFVFDRMFTNPRDSYGKPLVKDREAELLYFADVCAGPGGFSEYVLWRKKWHAKGFGM 300
ANMDFVFDRMFTNPRDSYGKPLVKDREAELLYFADVCAGPGGFSEYVLWRKKWHAKGFGM
Sbjct: 241 ANMDFVFDRMFTNPRDSYGKPLVKDREAELLYFADVCAGPGGFSEYVLWRKKWHAKGFGM 300
Query: 301 TLKGPNDFKLEDFYSASSELFEPYYGEGGIDGDGDITRPENISAFRNFVLDNTDRKGVHF 360
TLKGPNDFKLEDFYSASSELFEPYYGEGGIDGDGDITRPENISAFRNFVLDNTDRKGVHF
Sbjct: 301 TLKGPNDFKLEDFYSASSELFEPYYGEGGIDGDGDITRPENISAFRNFVLDNTDRKGVHF 360
Query: 361 LMADGGFSVEGQENLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSVGLVYLL 420
LMADGGFSVEGQENLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSVGLVYLL
Sbjct: 361 LMADGGFSVEGQENLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSVGLVYLL 420
Query: 421 YCCFERVCLFKPITSRPANSERYVVCKGLKVGIDDVRDYLFAVNIKLNQLRNTDSDVNLV 480
YCCFERVCLFKPITSRPANSERYVVCKGLKVGIDDVRDYLFAVNIKLNQLRNTDSDVNLV
Sbjct: 421 YCCFERVCLFKPITSRPANSERYVVCKGLKVGIDDVRDYLFAVNIKLNQLRNTDSDVNLV 480
Query: 481 VPLEVIKGDHEFTDYMIRSNESHCSLQIKALAKIHAFVQDTTLSEPRQAEIRKECLRLWG 540
VPLEVIKGDHEFTDYMIRSNESHCSLQIKALAKIHAFVQDTTLSEPRQAEIRKECLRLWG
Sbjct: 481 VPLEVIKGDHEFTDYMIRSNESHCSLQIKALAKIHAFVQDTTLSEPRQAEIRKECLRLWG 540
Query: 541 IPDQARVAPSSSDPKSKFFELIQGTEIDIFSYKPTLLTSKTLEKIRPVFDYRCMVSGSEQ 600
IPDQARVAPSSSDPKSKFFELIQGTEIDIFSYKPTLLTSKTLEKIRPVFDYRCMVSGSEQ
Sbjct: 541 IPDQARVAPSSSDPKSKFFELIQGTEIDIFSYKPTLLTSKTLEKIRPVFDYRCMVSGSEQ 600
Query: 601 KFLIGLGKSQIYTWDGRQSDRWIKLDLKTELPRDTLLSVEIVHELKGEGKAQRKISAIHI 660
KFLIGLGKSQIYTWDGRQSDRWIKLDLKTELPRDTLLSVEIVHELKGEGKAQRKISAIHI
Sbjct: 601 KFLIGLGKSQIYTWDGRQSDRWIKLDLKTELPRDTLLSVEIVHELKGEGKAQRKISAIHI 660
Query: 661 LDVLVLNGTDVREQHFNQRIQLAEKFVKAVSKPSRPDMNPIRVKEVYRLEEMEKIFVRLE 720
LDVLVLNGTDVREQHFNQRIQLAEKFVKAVSKPSRPDMNPIRVKEVYRLEEMEKIFVRLE
Sbjct: 661 LDVLVLNGTDVREQHFNQRIQLAEKFVKAVSKPSRPDMNPIRVKEVYRLEEMEKIFVRLE 720
Query: 721 MKIIKGSSGTPKLSYTGRDDRHFVPMGLYIVRTVNEPWTMGFSKSFKKKFFYNKKTKDST 780
MKIIKGSSGTPKLSYTGRDDRHFVPMGLYIVRTVNEPWTMGFSKSFKKKFFYNKKTKDST
Sbjct: 721 MKIIKGSSGTPKLSYTGRDDRHFVPMGLYIVRTVNEPWTMGFSKSFKKKFFYNKKTKDST 780
Query: 781 FDLPADSIAPFHICYYGRLFWEWGDGIRVHDSQKPQDQDKLSKEDVLSFIQMHRA 835
FDLPADSIAPFHICYYGRLFWEWGDGIRVHDSQKPQDQDKLSKEDVLSFIQMHRA
Sbjct: 781 FDLPADSIAPFHICYYGRLFWEWGDGIRVHDSQKPQDQDKLSKEDVLSFIQMHRA 835
>gi|153792086 FtsJ methyltransferase domain containing 1 [Homo
sapiens]
Length = 770
Score = 94.0 bits (232), Expect = 5e-19
Identities = 48/118 (40%), Positives = 68/118 (57%), Gaps = 3/118 (2%)
Query: 329 GIDGDGDITRPENISAFRNFVLDNTDRKGVHFLMADGGFSVEGQENLQEILSKQLLLCQF 388
G D GDI + ++ +NF+ + VH + ADG F +G QE L L C+
Sbjct: 203 GPDNTGDIMTLKFLTGLQNFI---SSMATVHLVTADGSFDCQGNPGEQEALVSSLHYCEV 259
Query: 389 LMALSIVRTGGHFICKTFDLFTPFSVGLVYLLYCCFERVCLFKPITSRPANSERYVVC 446
+ AL+ + GG F+ K F +F S+ L+YLL CCF++V +FKP TS+ NSE YVVC
Sbjct: 260 VTALTTLGNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHVFKPATSKAGNSEVYVVC 317
Score = 52.0 bits (123), Expect = 2e-06
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Query: 381 KQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSVGLVYLLYCCFERVCLFKPITSRPANS 440
++L L L +L + TG I FT F GL+++L+ CF + P +S P +
Sbjct: 623 QRLFLDCLLHSLRELHTGDVMILPVLSCFTRFMAGLIFVLHSCFRFITFVCPTSSDPLRT 682
Query: 441 ERYVVCKGLKVGIDDVRDYLFAVNIKLNQLRNTDSDVNLV--VPLEVI 486
++C G + + V YL +VN L+ L N+DS ++ VP+EV+
Sbjct: 683 CAVLLCVGYQDLPNPVFRYLQSVNELLSTLLNSDSPQQVLQFVPMEVL 730
>gi|153791865 FtsJ methyltransferase domain containing 1 [Homo
sapiens]
Length = 770
Score = 94.0 bits (232), Expect = 5e-19
Identities = 48/118 (40%), Positives = 68/118 (57%), Gaps = 3/118 (2%)
Query: 329 GIDGDGDITRPENISAFRNFVLDNTDRKGVHFLMADGGFSVEGQENLQEILSKQLLLCQF 388
G D GDI + ++ +NF+ + VH + ADG F +G QE L L C+
Sbjct: 203 GPDNTGDIMTLKFLTGLQNFI---SSMATVHLVTADGSFDCQGNPGEQEALVSSLHYCEV 259
Query: 389 LMALSIVRTGGHFICKTFDLFTPFSVGLVYLLYCCFERVCLFKPITSRPANSERYVVC 446
+ AL+ + GG F+ K F +F S+ L+YLL CCF++V +FKP TS+ NSE YVVC
Sbjct: 260 VTALTTLGNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHVFKPATSKAGNSEVYVVC 317
Score = 52.0 bits (123), Expect = 2e-06
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Query: 381 KQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSVGLVYLLYCCFERVCLFKPITSRPANS 440
++L L L +L + TG I FT F GL+++L+ CF + P +S P +
Sbjct: 623 QRLFLDCLLHSLRELHTGDVMILPVLSCFTRFMAGLIFVLHSCFRFITFVCPTSSDPLRT 682
Query: 441 ERYVVCKGLKVGIDDVRDYLFAVNIKLNQLRNTDSDVNLV--VPLEVI 486
++C G + + V YL +VN L+ L N+DS ++ VP+EV+
Sbjct: 683 CAVLLCVGYQDLPNPVFRYLQSVNELLSTLLNSDSPQQVLQFVPMEVL 730
>gi|29029591 FtsJ homolog 1 isoform b [Homo sapiens]
Length = 327
Score = 50.4 bits (119), Expect = 7e-06
Identities = 62/233 (26%), Positives = 96/233 (41%), Gaps = 38/233 (16%)
Query: 260 KPLVKDREAELLY----FADVCAGPGGFSEYVLWRKKWHAKGFGMTLKGPNDFKLEDFYS 315
K L D+E +L D+CA PG +S+ + +K +G G + +
Sbjct: 28 KLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVL--SQKIGGQGSGHVV------------A 73
Query: 316 ASSELFEPYYGEGGIDGDGD--ITRPENISAFRNFVLDNTDRKGVHFLMADGGFSVEGQE 373
+ P G I GD T E I F+ D ++ DG V G
Sbjct: 74 VDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPAD--------LVVCDGAPDVTGLH 125
Query: 374 NLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSVGLVY-LLYCCFERVCLFKP 432
++ E + QLLL +A +++ GG F+ K +F V L+Y L F V KP
Sbjct: 126 DVDEYMQAQLLLAALNIATHVLKPGGCFVAK---IFRGRDVTLLYSQLQVFFSSVLCAKP 182
Query: 433 ITSRPANSERYVVCKGL---KVGIDDVRDYLFAVNIKLNQLRNTDSDVNLVVP 482
+SR ++ E + VC+G + I D+ L + NQL D ++VP
Sbjct: 183 RSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSYDFNQL---DGPTRIIVP 232
>gi|29029589 FtsJ homolog 1 isoform b [Homo sapiens]
Length = 327
Score = 50.4 bits (119), Expect = 7e-06
Identities = 62/233 (26%), Positives = 96/233 (41%), Gaps = 38/233 (16%)
Query: 260 KPLVKDREAELLY----FADVCAGPGGFSEYVLWRKKWHAKGFGMTLKGPNDFKLEDFYS 315
K L D+E +L D+CA PG +S+ + +K +G G + +
Sbjct: 28 KLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVL--SQKIGGQGSGHVV------------A 73
Query: 316 ASSELFEPYYGEGGIDGDGD--ITRPENISAFRNFVLDNTDRKGVHFLMADGGFSVEGQE 373
+ P G I GD T E I F+ D ++ DG V G
Sbjct: 74 VDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPAD--------LVVCDGAPDVTGLH 125
Query: 374 NLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSVGLVY-LLYCCFERVCLFKP 432
++ E + QLLL +A +++ GG F+ K +F V L+Y L F V KP
Sbjct: 126 DVDEYMQAQLLLAALNIATHVLKPGGCFVAK---IFRGRDVTLLYSQLQVFFSSVLCAKP 182
Query: 433 ITSRPANSERYVVCKGL---KVGIDDVRDYLFAVNIKLNQLRNTDSDVNLVVP 482
+SR ++ E + VC+G + I D+ L + NQL D ++VP
Sbjct: 183 RSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSYDFNQL---DGPTRIIVP 232
>gi|7110661 FtsJ homolog 1 isoform a [Homo sapiens]
Length = 329
Score = 48.5 bits (114), Expect = 3e-05
Identities = 53/196 (27%), Positives = 82/196 (41%), Gaps = 32/196 (16%)
Query: 260 KPLVKDREAELLY----FADVCAGPGGFSEYVLWRKKWHAKGFGMTLKGPNDFKLEDFYS 315
K L D+E +L D+CA PG +S+ + +K +G G + +
Sbjct: 28 KLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVL--SQKIGGQGSGHVV------------A 73
Query: 316 ASSELFEPYYGEGGIDGDGD--ITRPENISAFRNFVLDNTDRKGVHFLMADGGFSVEGQE 373
+ P G I GD T E I F+ D ++ DG V G
Sbjct: 74 VDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPAD--------LVVCDGAPDVTGLH 125
Query: 374 NLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSVGLVY-LLYCCFERVCLFKP 432
++ E + QLLL +A +++ GG F+ K +F V L+Y L F V KP
Sbjct: 126 DVDEYMQAQLLLAALNIATHVLKPGGCFVAK---IFRGRDVTLLYSQLQVFFSSVLCAKP 182
Query: 433 ITSRPANSERYVVCKG 448
+SR ++ E + VC+G
Sbjct: 183 RSSRNSSIEAFAVCQG 198
>gi|56788356 tuftelin interacting protein 11 [Homo sapiens]
Length = 837
Score = 42.0 bits (97), Expect = 0.002
Identities = 40/148 (27%), Positives = 55/148 (37%), Gaps = 34/148 (22%)
Query: 16 QKKRVAELALSLSSTSDDEPPSS--------------VSHGAKASTTSLSG-SDSETEGK 60
Q K A + SDDE PS +S G K + DS+ E K
Sbjct: 44 QTKEEATYGVWAERDSDDERPSFGGKRARDYSAPVNFISAGLKKGAAEEAELEDSDDEEK 103
Query: 61 QHSSDSFDDAFKADSLVEGTSSRYSMYN-------------------SVSQKLMAKMGFR 101
D F F L G + + S + QKL+ KMG+
Sbjct: 104 PVKQDDFPKDFGPRKLKTGGNFKPSQKGFAGGTKSFMDFGSWERHTKGIGQKLLQKMGYV 163
Query: 102 EGEGLGKYSQGRKDIVEASSQKGRRGLG 129
G GLGK +QG + +EA +KG+ +G
Sbjct: 164 PGRGLGKNAQGIINPIEAKQRKGKGAVG 191
>gi|8393259 tuftelin interacting protein 11 [Homo sapiens]
Length = 837
Score = 42.0 bits (97), Expect = 0.002
Identities = 40/148 (27%), Positives = 55/148 (37%), Gaps = 34/148 (22%)
Query: 16 QKKRVAELALSLSSTSDDEPPSS--------------VSHGAKASTTSLSG-SDSETEGK 60
Q K A + SDDE PS +S G K + DS+ E K
Sbjct: 44 QTKEEATYGVWAERDSDDERPSFGGKRARDYSAPVNFISAGLKKGAAEEAELEDSDDEEK 103
Query: 61 QHSSDSFDDAFKADSLVEGTSSRYSMYN-------------------SVSQKLMAKMGFR 101
D F F L G + + S + QKL+ KMG+
Sbjct: 104 PVKQDDFPKDFGPRKLKTGGNFKPSQKGFAGGTKSFMDFGSWERHTKGIGQKLLQKMGYV 163
Query: 102 EGEGLGKYSQGRKDIVEASSQKGRRGLG 129
G GLGK +QG + +EA +KG+ +G
Sbjct: 164 PGRGLGKNAQGIINPIEAKQRKGKGAVG 191
>gi|224549005 RNA binding motif protein 17 [Homo sapiens]
Length = 401
Score = 40.4 bits (93), Expect = 0.007
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 85 SMYNSVSQKLMAKMGFREGEGLGKYSQGRKDI--VEASSQKG 124
+M +V+ K+M K GFREG+GLGK+ QG VE +S++G
Sbjct: 233 NMGGTVAHKIMQKYGFREGQGLGKHEQGLSTALSVEKTSKRG 274
>gi|14249678 RNA binding motif protein 17 [Homo sapiens]
Length = 401
Score = 40.4 bits (93), Expect = 0.007
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 85 SMYNSVSQKLMAKMGFREGEGLGKYSQGRKDI--VEASSQKG 124
+M +V+ K+M K GFREG+GLGK+ QG VE +S++G
Sbjct: 233 NMGGTVAHKIMQKYGFREGQGLGKHEQGLSTALSVEKTSKRG 274
>gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]
Length = 2426
Score = 39.7 bits (91), Expect = 0.012
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 94 LMAKMGFREGEGLGKYSQGRKDIVEASSQKGRRGL 128
LM KMG+REGEGLGK +G K+ + + R+GL
Sbjct: 2312 LMRKMGWREGEGLGKNKEGNKEPILVDFKTDRKGL 2346
>gi|148747556 PIN2-interacting protein 1 [Homo sapiens]
Length = 328
Score = 39.3 bits (90), Expect = 0.015
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 92 QKLMAKMGFREGEGLGKYSQGRKDIVEASSQKGRRGLGLTLRGFDQELNVDWRDEPEPSA 151
Q+++ KMG+ +G+GLG QG D ++ + GLG T+ D + +D+
Sbjct: 31 QRMLEKMGWSKGKGLGAQEQGATDHIKVQVKNNHLGLGATINNEDNW--IAHQDDFNQLL 88
Query: 152 CEQVSWFPECTTEIPDTQEMSDWMVVGKRKM 182
E + + TT+ D +E + + K K+
Sbjct: 89 AELNTCHGQETTDSSDKKEKKSFSLEEKSKI 119
>gi|133925795 zinc finger, CCCH-type with G patch domain isoform c
[Homo sapiens]
Length = 511
Score = 38.9 bits (89), Expect = 0.020
Identities = 27/110 (24%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 48 TSLSGSDSETEGKQHSSDSFDDAFKADSLVEGT-SSRYSMYN----SVSQKLMAKMGFRE 102
T + SDS+++G SS + +D++ GT SS ++ + + +L+ KMG+
Sbjct: 271 TEATESDSDSDGTGDSS--YARVVGSDAVDSGTCSSAFAGWEVHTRGIGSRLLTKMGYEF 328
Query: 103 GEGLGKYSQGRKDIVEASSQKGRRGLGLTLRGFDQELNVDWRDEPEPSAC 152
G+GLG++++GR + + A + L + ++ V +P C
Sbjct: 329 GKGLGRHAEGRVEPIHAVVLPRGKSLDQCVETLQKQTRVGKAGTNKPPRC 378
>gi|133925791 zinc finger, CCCH-type with G patch domain isoform c
[Homo sapiens]
Length = 511
Score = 38.9 bits (89), Expect = 0.020
Identities = 27/110 (24%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 48 TSLSGSDSETEGKQHSSDSFDDAFKADSLVEGT-SSRYSMYN----SVSQKLMAKMGFRE 102
T + SDS+++G SS + +D++ GT SS ++ + + +L+ KMG+
Sbjct: 271 TEATESDSDSDGTGDSS--YARVVGSDAVDSGTCSSAFAGWEVHTRGIGSRLLTKMGYEF 328
Query: 103 GEGLGKYSQGRKDIVEASSQKGRRGLGLTLRGFDQELNVDWRDEPEPSAC 152
G+GLG++++GR + + A + L + ++ V +P C
Sbjct: 329 GKGLGRHAEGRVEPIHAVVLPRGKSLDQCVETLQKQTRVGKAGTNKPPRC 378
>gi|39725952 angiogenic factor VG5Q [Homo sapiens]
Length = 714
Score = 38.5 bits (88), Expect = 0.026
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 59 GKQHSSDSFDDAFKADSLVEGTSSRYSMYNSVSQKLMAKMGFREGEGLGKYSQGRKDIVE 118
GK+ + F+ D S + N +K++ KMG+++GEGLGK G K ++
Sbjct: 592 GKRREQVGSEGTFQRDDAPASVHSEITDSNK-GRKMLEKMGWKKGEGLGKDGGGMKTPIQ 650
Query: 119 ASSQKGRRGLG 129
++ GLG
Sbjct: 651 LQLRRTHAGLG 661
>gi|33469964 splicing factor 4 [Homo sapiens]
Length = 645
Score = 38.1 bits (87), Expect = 0.034
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Query: 65 DSFDDAFKADSLVEGTSSRYSMYN-------SVSQKLMAKMGFREGEGLGKYSQGRKDIV 117
+ F + FKA L EG YS Y ++ +++ KMG++EGEGLG QG K+ V
Sbjct: 535 EKFMETFKA--LKEGREPDYSEYKEFKLTVENIGYQMLMKMGWKEGEGLGSEGQGIKNPV 592
>gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens]
Length = 1301
Score = 36.6 bits (83), Expect = 0.099
Identities = 24/64 (37%), Positives = 32/64 (50%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSSRYSMY 87
SS S D SS S + S+ S GSDS++ + SS+S D + +DS SS S
Sbjct: 826 SSNSSDSSDSSNSSDSSDSSDSSDGSDSDSSNRSDSSNSSDSSDSSDSSNSSDSSDSSDS 885
Query: 88 NSVS 91
N S
Sbjct: 886 NESS 889
Score = 35.4 bits (80), Expect = 0.22
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 26 SLSSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSS 82
S SS S D S+ S + S+ S + SDS++ +SSDS D + +DS SS
Sbjct: 874 SNSSDSSDSSDSNESSNSSDSSDSSNSSDSDSSDSSNSSDSSDSSNSSDSSESSNSS 930
Score = 32.7 bits (73), Expect = 1.4
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSSRYSMY 87
SS SD +S S + + S SDS++ +SSDS D + +DS SS
Sbjct: 566 SSDSDSSDSNSSSDSDSSDSDSSDSSDSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSKSD 625
Query: 88 NSVSQ 92
+S S+
Sbjct: 626 SSKSE 630
Score = 32.0 bits (71), Expect = 2.4
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSS 82
S++SD S+ S + +S +S S S++ +SSDS D + +DS SS
Sbjct: 729 SNSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSDSSDSSNSS 783
Score = 32.0 bits (71), Expect = 2.4
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 26 SLSSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSSRYS 85
S SS S D SS S + +S +S S S++ SSDS D + +DS +S+R
Sbjct: 804 SNSSDSSDSSDSSDSDSSNSSDSSNSSDSSDSSNSSDSSDSSDSSDGSDS---DSSNRSD 860
Query: 86 MYNS 89
NS
Sbjct: 861 SSNS 864
Score = 32.0 bits (71), Expect = 2.4
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSSRYS 85
S++SD S+ S +++S +S + + S++ SSDS D + +DS SS S
Sbjct: 909 SNSSDSSDSSNSSDSSESSNSSDNSNSSDSSNSSDSSDSSDSSNSSDSSNSSDSSNSS 966
Score = 32.0 bits (71), Expect = 2.4
Identities = 20/55 (36%), Positives = 26/55 (47%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSS 82
SS S D SS S + S+ S S+S +SSDS D + +DS SS
Sbjct: 938 SSNSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSNSSDSSDSSNSSDSSDSSDSS 992
Score = 32.0 bits (71), Expect = 2.4
Identities = 20/55 (36%), Positives = 26/55 (47%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSS 82
SS S D SS S + S+ S S S++ SSDS D + +DS SS
Sbjct: 950 SSNSSDSSNSSDSSNSSDSSDSNSSDSSDSSNSSDSSDSSDSSDSSDSSDSSNSS 1004
Score = 32.0 bits (71), Expect = 2.4
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSSRYS 85
SS S D SS S + S+ S S S+ E++ + S + ++ +DS EG+ S +S
Sbjct: 1240 SSDSSDSSNSSDSSDSSDSSDSTSDSNDESDSQSKSGNGNNNGSDSDSDSEGSDSNHS 1297
Score = 31.6 bits (70), Expect = 3.2
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADS 75
SS S + SS S + S+ S SDS+++ + SDS D K+DS
Sbjct: 595 SSDSSNSSDSSDSSDSSDSSDSSDSSDSKSDSSKSESDSSDSDSKSDS 642
Score = 31.6 bits (70), Expect = 3.2
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 26 SLSSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSS 82
S +S S D S+ S + +S +S S S++ SSDS D + +DS SS
Sbjct: 718 SSNSNSSDSDSSNSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSS 774
Score = 31.6 bits (70), Expect = 3.2
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSS 82
S +SD S S+ + +S +S S + S++ SSDS D + +DS SS
Sbjct: 1004 SDSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSNSS 1058
Score = 31.6 bits (70), Expect = 3.2
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSSRYS 85
S +SD S S +++S +S S + S++ SSDS D + +DS SS S
Sbjct: 1067 SDSSDSSDSSDSSDSSESSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSS 1124
Score = 31.6 bits (70), Expect = 3.2
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSS 82
S++SD S S + +S +S S SE+ SSDS D + +DS SS
Sbjct: 1121 SNSSDSSDSSDSSDSSDSSNSSDSSDSSESSDSSDSSDSSDSSDSSDSSDSSDSS 1175
Score = 31.2 bits (69), Expect = 4.2
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSS 82
S++SD S S+ + +S +S S + S++ SSDS D + +DS SS
Sbjct: 738 SNSSDSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSDSSDSSNSSDSNDSSNSS 792
Score = 31.2 bits (69), Expect = 4.2
Identities = 20/55 (36%), Positives = 26/55 (47%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSS 82
SS S D SS S + S+ S SDS +SSDS + + +DS SS
Sbjct: 788 SSNSSDSSDSSNSSDSSNSSDSSDSSDSSDSDSSNSSDSSNSSDSSDSSNSSDSS 842
Score = 31.2 bits (69), Expect = 4.2
Identities = 21/57 (36%), Positives = 27/57 (47%)
Query: 26 SLSSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSS 82
S SS S D SS S + S+ S + SDS SSDS + + +DS SS
Sbjct: 939 SNSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSNSSDSSDSSNSSDSSDSSDSSDSS 995
Score = 31.2 bits (69), Expect = 4.2
Identities = 20/55 (36%), Positives = 26/55 (47%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSS 82
SS S D SS S + S+ S SDS + SS+S D + +DS SS
Sbjct: 944 SSDSSDSSNSSDSSNSSDSSNSSDSSDSNSSDSSDSSNSSDSSDSSDSSDSSDSS 998
Score = 31.2 bits (69), Expect = 4.2
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 26 SLSSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSS 82
S SS S + SS S+ + +S +S S S++ SSDS D + +DS SS
Sbjct: 957 SNSSDSSNSSDSSDSNSSDSSDSSNSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSS 1013
Score = 31.2 bits (69), Expect = 4.2
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSS 82
S +SD S S+ + +S +S S S++ SSDS D + +DS SS
Sbjct: 1127 SDSSDSSDSSDSSNSSDSSDSSESSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSS 1181
Score = 30.8 bits (68), Expect = 5.4
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSSRYSMY 87
+S+SD + S S + S +S S + S++ SSDS D + +DS + + S
Sbjct: 575 NSSSDSDSSDSDSSDSSDSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSKSDSSKSESDSS 634
Query: 88 NSVSQ 92
+S S+
Sbjct: 635 DSDSK 639
Score = 30.8 bits (68), Expect = 5.4
Identities = 20/55 (36%), Positives = 24/55 (43%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSS 82
SS S D SS S + S S + SDS SDS D + +DS SS
Sbjct: 867 SSDSSDSSNSSDSSDSSDSNESSNSSDSSDSSNSSDSDSSDSSNSSDSSDSSNSS 921
Score = 30.8 bits (68), Expect = 5.4
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSSRYS 85
SS S+ S S+ + +S +S S S++ +SSDS D + +DS SS S
Sbjct: 968 SSDSNSSDSSDSSNSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSNSSDSSNSS 1025
Score = 30.8 bits (68), Expect = 5.4
Identities = 19/58 (32%), Positives = 27/58 (46%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSSRYS 85
S++SD S S + +S +S S S + SSDS D + +DS SS S
Sbjct: 1001 SNSSDSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSNSS 1058
Score = 30.8 bits (68), Expect = 5.4
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSS 82
S +SD S+ S + +S +S S S++ SSDS D + +DS SS
Sbjct: 1007 SDSSDSSDSSNSSDSSNSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSS 1061
Score = 30.8 bits (68), Expect = 5.4
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSS 82
S +SD S S + +S +S S S++ +SSDS D + +DS SS
Sbjct: 1106 SDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSNSSDSSDSSESSDSSDSSDSS 1160
Score = 30.8 bits (68), Expect = 5.4
Identities = 19/58 (32%), Positives = 27/58 (46%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSSRYS 85
S +SD S S + +S +S S S++ SSDS D + +DS SS S
Sbjct: 1124 SDSSDSSDSSDSSDSSNSSDSSDSSESSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSS 1181
Score = 30.4 bits (67), Expect = 7.1
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 26 SLSSTSDDEPPSSVSHGAKASTTSLSGS-DSETEGKQHSSDSFDDAFKADSLVEGTSS 82
S SS S D SS S + +S +S S S DS++ SSDS + + +DS SS
Sbjct: 696 SNSSESSDSSDSSDSDSSDSSDSSNSNSSDSDSSNSSDSSDSSNSSDSSDSSDSSNSS 753
Score = 30.4 bits (67), Expect = 7.1
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSS 82
S +SD S S + +S +S S + S++ +SSDS D + +DS SS
Sbjct: 756 SDSSDSSNSSDSSDSSDSSDSSDSSNSSDSNDSSNSSDSSDSSNSSDSSNSSDSS 810
Score = 30.4 bits (67), Expect = 7.1
Identities = 19/58 (32%), Positives = 28/58 (48%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSSRYS 85
SS S D S+ S + +S +S S S++ SSDS + + +DS SS S
Sbjct: 962 SSNSSDSSDSNSSDSSDSSNSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSNSS 1019
Score = 30.4 bits (67), Expect = 7.1
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSS 82
S++SD S S + +S +S S S++ +SSDS D + +DS SS
Sbjct: 1022 SNSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSDSS 1076
Score = 30.4 bits (67), Expect = 7.1
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSS 82
S +SD S S + +S +S S S++ SSDS D + +DS SS
Sbjct: 1034 SDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSESSDSS 1088
Score = 30.4 bits (67), Expect = 7.1
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSS 82
S +SD S S + +S +S S S++ SSDS D + +DS SS
Sbjct: 1040 SDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSESSDSSDSSNSS 1094
Score = 30.4 bits (67), Expect = 7.1
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSS 82
S +SD S S + +S +S S S++ +SSDS D + +DS SS
Sbjct: 1058 SDSSDSSDSSDSSDSSDSSDSSDSSESSDSSDSSNSSDSSDSSDSSDSSDSSDSS 1112
Score = 30.4 bits (67), Expect = 7.1
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSS 82
S +SD S S + +S +S S S++ SSDS D + +DS SS
Sbjct: 1061 SDSSDSSDSSDSSDSSDSSDSSESSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSS 1115
Score = 30.4 bits (67), Expect = 7.1
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSS 82
S++SD S S + +S +S S S++ SSDS D + +DS SS
Sbjct: 1091 SNSSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSNSSDSS 1145
Score = 30.4 bits (67), Expect = 7.1
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSS 82
S +SD S S+ + +S +S S S++ SSDS D + +DS SS
Sbjct: 1166 SDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSS 1220
Score = 30.4 bits (67), Expect = 7.1
Identities = 21/64 (32%), Positives = 29/64 (45%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSSRYSMY 87
S +SD S S + +S +S S S++ SSDS D + +DS SS S
Sbjct: 1172 SDSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDS 1231
Query: 88 NSVS 91
N S
Sbjct: 1232 NESS 1235
Score = 30.4 bits (67), Expect = 7.1
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDS-ETEGKQHSSDSFDDAFKADSLVEGTSSRYSM 86
SS S D SS S + S+ S SDS E+ SSDS D + +DS SS +
Sbjct: 1204 SSDSSDSSDSSDSSDSSDSSDSSDSSDSNESSDSSDSSDSSDSSNSSDSSDSSDSSDSTS 1263
Query: 87 YNSVSQKLMAKMGFREGEG 105
++ +K G G
Sbjct: 1264 DSNDESDSQSKSGNGNNNG 1282
Score = 30.0 bits (66), Expect = 9.3
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSS 82
S +SD S+ S + +S +S S S S++ SSDS D + ++S SS
Sbjct: 654 SDSSDSSNSSNSSDSSDSSDSSDSSSSSDSSNSSDSSDSSDSSNSSESSDSSDSS 708
Score = 30.0 bits (66), Expect = 9.3
Identities = 22/64 (34%), Positives = 30/64 (46%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSSRYSMY 87
SS+S D SS S + S+ S SDS SSDS D + S + ++S S
Sbjct: 677 SSSSSDSSNSSDSSDSSDSSNSSESSDSSDSSDSDSSDSSDSSNSNSSDSDSSNSSDSSD 736
Query: 88 NSVS 91
+S S
Sbjct: 737 SSNS 740
Score = 30.0 bits (66), Expect = 9.3
Identities = 20/58 (34%), Positives = 26/58 (44%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSSRYS 85
SS S + SS S + S+ S SDS SSDS + + +DS SS S
Sbjct: 870 SSDSSNSSDSSDSSDSNESSNSSDSSDSSNSSDSDSSDSSNSSDSSDSSNSSDSSESS 927
Score = 30.0 bits (66), Expect = 9.3
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 26 SLSSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSS 82
S SS SD S+ S + +S +S S S + +SSDS + + +DS SS
Sbjct: 898 SNSSDSDSSDSSNSSDSSDSSNSSDSSESSNSSDNSNSSDSSNSSDSSDSSDSSNSS 954
Score = 30.0 bits (66), Expect = 9.3
Identities = 19/58 (32%), Positives = 27/58 (46%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSSRYS 85
S++SD S S + +S +S S S + SSDS D + +DS SS S
Sbjct: 1028 SNSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSESS 1085
Score = 30.0 bits (66), Expect = 9.3
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSS 82
S +SD S S + +S +S S S++ SSDS D + +DS SS
Sbjct: 1073 SDSSDSSDSSESSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSS 1127
Score = 30.0 bits (66), Expect = 9.3
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSS 82
S +SD S S + +S +S S + S++ SSDS D + +DS SS
Sbjct: 1097 SDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSNSSDSSDSSESS 1151
Score = 30.0 bits (66), Expect = 9.3
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSS 82
S +SD S S + +S +S S + S++ SSDS D + +DS SS
Sbjct: 1115 SDSSDSSNSSDSSDSSDSSDSSDSSNSSDSSDSSESSDSSDSSDSSDSSDSSDSS 1169
Score = 30.0 bits (66), Expect = 9.3
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSS 82
S +SD S+ S + +S +S S S++ SSDS D + +DS SS
Sbjct: 1130 SDSSDSSDSSNSSDSSDSSESSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSS 1184
Score = 30.0 bits (66), Expect = 9.3
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSS 82
S +SD S S + +S +S S S++ SSDS D + +DS SS
Sbjct: 1148 SESSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSS 1202
Score = 30.0 bits (66), Expect = 9.3
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSS 82
S +SD S S + +S +S S + S++ SSDS D + +DS SS
Sbjct: 1154 SDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSDSS 1208
Score = 30.0 bits (66), Expect = 9.3
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSS 82
S +SD S S + +S +S S S++ SSDS D + +DS SS
Sbjct: 1157 SDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSS 1211
Score = 30.0 bits (66), Expect = 9.3
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSS 82
S +SD S S + +S +S S S++ SSDS D + +DS SS
Sbjct: 1160 SDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSS 1214
Score = 30.0 bits (66), Expect = 9.3
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSS 82
S +SD S S + +S +S S S++ SSDS D + +DS SS
Sbjct: 1163 SDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSS 1217
Score = 30.0 bits (66), Expect = 9.3
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSS 82
S +SD S+ S + +S +S S S++ SSDS D + +DS SS
Sbjct: 1169 SDSSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSS 1223
Score = 30.0 bits (66), Expect = 9.3
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 28 SSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSS 82
S +SD S S + +S +S S S++ SSDS D + +DS SS
Sbjct: 1199 SDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSNESSDSSDSSDSSDSSNSSDSS 1253
>gi|4504063 golgin 97 [Homo sapiens]
Length = 767
Score = 36.2 bits (82), Expect = 0.13
Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 9/132 (6%)
Query: 15 KQKKRVAE-LALSLSSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKA 73
K KK++AE A++ P SVS + AS + SG D ++G D +
Sbjct: 4 KLKKKIAEETAVAQRPGGATRIPRSVSKESVASMGADSGDDFASDGSSSREDLSSQLLRR 63
Query: 74 DSLVEGTSSRYSMY-------NSVSQKLMAKMGFREGEGLGKYSQGRKDIVEASSQKGRR 126
+ + +R S Y + +KL + + + K+ Q + + +A+ K
Sbjct: 64 NEQIRKLEARLSDYAEQVRNLQKIKEKLEIALEKHQDSSMRKF-QEQNETFQANRAKMAE 122
Query: 127 GLGLTLRGFDQE 138
GL L L DQE
Sbjct: 123 GLALALARKDQE 134
>gi|4507255 signal transducer and activator of transcription 4 [Homo
sapiens]
Length = 748
Score = 35.8 bits (81), Expect = 0.17
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 23 LALSLSSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSS 82
L SL S+S E +V H A S+ ++ +T+ + D FD +K ++ +
Sbjct: 127 LEKSLQSSSVSERQRNVEHKVAAIKNSVQMTEQDTKYLEDLQDEFDYRYKTIQTMDQSDK 186
Query: 83 RYSMYNS---VSQKLMAKMGFREGEGLGKYSQ 111
+M N Q+++ + F+ E L K +Q
Sbjct: 187 NSAMVNQEVLTLQEMLNSLDFKRKEALSKMTQ 218
>gi|8923106 zinc finger, CCHC domain containing 10 [Homo sapiens]
Length = 170
Score = 35.8 bits (81), Expect = 0.17
Identities = 23/76 (30%), Positives = 38/76 (50%)
Query: 14 KKQKKRVAELALSLSSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKA 73
+K KK+ ++ S SS+S D S S ++ ++TS S DS+T+ SS S + +
Sbjct: 76 RKAKKKRSKSVTSSSSSSSDSSASDSSSESEETSTSSSSEDSDTDESSSSSSSSASSTTS 135
Query: 74 DSLVEGTSSRYSMYNS 89
S + S S +S
Sbjct: 136 SSSSDSDSDSSSSSSS 151
Score = 33.1 bits (74), Expect = 1.1
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 26 SLSSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDS 66
S S SD + SS S + +STTS S SDS+++ SS S
Sbjct: 112 SSSEDSDTDESSSSSSSSASSTTSSSSSDSDSDSSSSSSSS 152
>gi|153945765 mitogen-activated protein kinase kinase kinase 1 [Homo
sapiens]
Length = 1512
Score = 35.4 bits (80), Expect = 0.22
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 5 TDPECTAPIKKQKKRVAELALSLSSTSDDEPPSSVSHGAKASTTSLSGSDS------ETE 58
+ PECT ++K K + LS SS E +S+S G +STT+ + + +T+
Sbjct: 900 SSPECTVHLEKTGKGLCATKLSASSEDISERLASISVGPSSSTTTTTTTTEQPKPMVQTK 959
Query: 59 GKQHS 63
G+ HS
Sbjct: 960 GRPHS 964
>gi|5032031 RNA binding motif protein 5 [Homo sapiens]
Length = 815
Score = 35.0 bits (79), Expect = 0.29
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 87 YNSVSQKLMAKMGFREGEGLGKYSQGRKDIVEASSQKGRRGLG 129
++++ K++ MG+REG GLG+ QG +EA + GLG
Sbjct: 743 HSNIGNKMLQAMGWREGSGLGRKCQGITAPIEAQVRLKGAGLG 785
>gi|133925793 zinc finger, CCCH-type with G patch domain isoform a
[Homo sapiens]
Length = 531
Score = 35.0 bits (79), Expect = 0.29
Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 23/128 (17%)
Query: 48 TSLSGSDSETEGKQHSS-------DSFDDAFKA-----------DSLVEGT-SSRYSMYN 88
T + SDS+++G SS D+ D A + D++ GT SS ++ +
Sbjct: 271 TEATESDSDSDGTGDSSYARVVGSDAVDSAQSSALCPSLAVVGSDAVDSGTCSSAFAGWE 330
Query: 89 ----SVSQKLMAKMGFREGEGLGKYSQGRKDIVEASSQKGRRGLGLTLRGFDQELNVDWR 144
+ +L+ KMG+ G+GLG++++GR + + A + L + ++ V
Sbjct: 331 VHTRGIGSRLLTKMGYEFGKGLGRHAEGRVEPIHAVVLPRGKSLDQCVETLQKQTRVGKA 390
Query: 145 DEPEPSAC 152
+P C
Sbjct: 391 GTNKPPRC 398
>gi|20127479 RNA binding motif protein 10 isoform 1 [Homo sapiens]
Length = 930
Score = 34.7 bits (78), Expect = 0.38
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 88 NSVSQKLMAKMGFREGEGLGKYSQGRKDIVEASSQKGRRGLGLTLRG 134
+++ +++ MG++EG GLG+ QG +EA ++ RG GL RG
Sbjct: 859 DNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRV--RGSGLGARG 903
>gi|23111018 RNA binding motif protein 10 isoform 2 [Homo sapiens]
Length = 852
Score = 34.7 bits (78), Expect = 0.38
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 88 NSVSQKLMAKMGFREGEGLGKYSQGRKDIVEASSQKGRRGLGLTLRG 134
+++ +++ MG++EG GLG+ QG +EA ++ RG GL RG
Sbjct: 781 DNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRV--RGSGLGARG 825
>gi|63003897 transcription factor NRF [Homo sapiens]
Length = 690
Score = 33.1 bits (74), Expect = 1.1
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 88 NSVSQKLMAKMGFREGEGLGKYSQGRKDIVEASSQKGRRGLGL 130
+++ +L+ KMG+ G GLGK +G ++ + Q R GLGL
Sbjct: 552 DNIGNQLLRKMGWTGG-GLGKSGEGIREPISVKEQHKREGLGL 593
>gi|194097365 FtsJ homolog 3 [Homo sapiens]
Length = 847
Score = 33.1 bits (74), Expect = 1.1
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 383 LLLCQFLMALSIVRTGGHFICKTFDL--FTPFSVGLVYLLYCCFERVCLFKPITSRPANS 440
L L +A + GG FI K F + P L+++ F RV KP SR ++
Sbjct: 136 LTLMALRLACDFLARGGSFITKVFRSRDYQP----LLWIFQQLFRRVQATKPQASRHESA 191
Query: 441 ERYVVCKG 448
E +VVC+G
Sbjct: 192 EIFVVCQG 199
>gi|8922313 G patch domain containing 2 [Homo sapiens]
Length = 528
Score = 32.7 bits (73), Expect = 1.4
Identities = 14/54 (25%), Positives = 30/54 (55%)
Query: 79 GTSSRYSMYNSVSQKLMAKMGFREGEGLGKYSQGRKDIVEASSQKGRRGLGLTL 132
G +++ + N++ +++ MG+ G GLG+ +G + ++A + GLG L
Sbjct: 459 GENAQPILENNIGNRMLQNMGWTPGSGLGRDGKGISEPIQAMQRPKGLGLGFPL 512
>gi|47834348 minor histocompatibility antigen HA-1 [Homo sapiens]
Length = 1136
Score = 32.0 bits (71), Expect = 2.4
Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 3/111 (2%)
Query: 27 LSSTSDDEPPSSVSHGAKASTTSLSGSDSETEGKQHSSDSFDDAFKADSLVEGTSSRYSM 86
+ +T + P+S+S A A+ LSG+ S T G+ H S A + EG +
Sbjct: 56 VKATGTLKRPTSLSRHASAAGFPLSGAASWTLGRSHRS-PLTAASPGELPTEGAGP--DV 112
Query: 87 YNSVSQKLMAKMGFREGEGLGKYSQGRKDIVEASSQKGRRGLGLTLRGFDQ 137
+S L F EG K R D++EA + LG LR Q
Sbjct: 113 VEDISHLLADVARFAEGLEKLKECVLRDDLLEARRPRAHECLGEALRVMHQ 163
>gi|205277458 G patch domain containing 3 [Homo sapiens]
Length = 525
Score = 32.0 bits (71), Expect = 2.4
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 79 GTSSRYSMYNSVSQKLMAKMGFREGEGLGKYSQGRKDIVEASSQKGR--RGLG 129
GT R++ + +K+M + G+ EG+GLG G + +++ Q R RGLG
Sbjct: 404 GTFERHT--KGIGRKVMERQGWAEGQGLGCRCSGVPEALDSDGQHPRCKRGLG 454
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,618,348
Number of Sequences: 37866
Number of extensions: 1441638
Number of successful extensions: 3901
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 3667
Number of HSP's gapped (non-prelim): 247
length of query: 835
length of database: 18,247,518
effective HSP length: 111
effective length of query: 724
effective length of database: 14,044,392
effective search space: 10168139808
effective search space used: 10168139808
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.