SF4 26175

Name: SF4	Sequence: fasta or formatted (645aa)		NCBI GI: 33469964
Description: splicing factor 4		Referenced in: RNA-binding Proteins Capping and Splicing
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.7 56 2 C cysteine 0.3 2 1 D aspartate 4.8 31 2 E glutamate 9.9 64 3 F phenylalanine 3.4 22 1 G glycine 6.5 42 2 H histidine 1.7 11 1 I isoleucine 2.8 18 2 K lysine 9.5 61 2 L leucine 7.3 47 2 M methionine 3.3 21 2 N asparagine 3.4 22 2 P proline 8.2 53 2 Q glutamine 5.9 38 2 R arginine 5.3 34 2 S serine 7.0 45 2 T threonine 3.9 25 3 V valine 4.2 27 1 W tryptophan 1.1 7 1 Y tyrosine 2.9 19 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 splicing factor 4 SFRS14 0.043 splicing factor, arginine/serine-rich 14 SFRS14 0.043 splicing factor, arginine/serine-rich 14 CHERP 0.031 calcium homeostasis endoplasmic reticulum protein [... SF3A1 0.029 splicing factor 3a, subunit 1, 120kDa isoform 1 [Homo... SF3A1 0.027 splicing factor 3a, subunit 1, 120kDa isoform 2 [Hom... RBM5 0.019 RNA binding motif protein 5 RBM10 0.019 RNA binding motif protein 10 isoform 1 RBM10 0.019 RNA binding motif protein 10 isoform 2 NKRF 0.018 transcription factor NRF AGGF1 0.018 angiogenic factor VG5Q TFIP11 0.017 tuftelin interacting protein 11 TFIP11 0.017 tuftelin interacting protein 11 CCDC75 0.016 coiled-coil domain containing 75 SR140 0.015 U2-associated SR140 protein GPATCH2 0.014 G patch domain containing 2 MLL2 0.013 myeloid/lymphoid or mixed-lineage leukemia 2 HIRIP3 0.013 HIRA interacting protein 3 CASKIN2 0.013 cask-interacting protein 2 isoform b CASKIN2 0.013 cask-interacting protein 2 isoform a NUP214 0.012 nucleoporin 214kDa LOC100292122 0.012 PREDICTED: hypothetical protein XP_002345138 LOC100286986 0.012 PREDICTED: hypothetical protein XP_002344191 LOC283685 0.012 PREDICTED: golgi autoantigen, golgin subfamily a-li... NCCRP1 0.012 non-specific cytotoxic cell receptor protein 1 homol... ATN1 0.012 atrophin-1 ATN1 0.012 atrophin-1 SFRS8 0.012 splicing factor, arginine/serine-rich 8 NACA 0.012 nascent polypeptide-associated complex alpha subuni... MAML3 0.011 mastermind-like 3 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.