Guide to the Human Genome
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Name: HMHA1 Sequence: fasta or formatted (1136aa) NCBI GI: 47834348
Description:

minor histocompatibility antigen HA-1

Referenced in:

HLA and Related Proteins
Rho and Rac

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9        112           3
 C cysteine            2.0         23           2
 D aspartate           4.6         52           2
 E glutamate           9.8        111           3
 F phenylalanine       2.6         30           1
 G glycine             7.0         79           2
 H histidine           2.8         32           1
 I isoleucine          2.2         25           2
 K lysine              5.4         61           2
 L leucine            10.2        116           2
 M methionine          2.0         23           2
 N asparagine          2.1         24           2
 P proline             5.9         67           2
 Q glutamine           5.2         59           3
 R arginine            6.7         76           3
 S serine              8.8        100           3
 T threonine           4.6         52           2
 V valine              5.8         66           3
 W tryptophan          0.4          4           1
 Y tyrosine            2.1         24           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   minor histocompatibility antigen HA-1 
ARHGAP29              0.253   PTPL1-associated RhoGAP 1 
GMIP                  0.203   GEM interacting protein 
CHN2                  0.046   beta chimerin isoform 2 
CHN2                  0.046   beta chimerin isoform 1 
CHN1                  0.045   chimerin (chimaerin) 1 isoform a 
CHN1                  0.045   chimerin (chimaerin) 1 isoform b 
ABR                   0.041   active breakpoint cluster region-related  protein i...
ABR                   0.041   active breakpoint cluster region-related  protein is...
ABR                   0.041   active breakpoint cluster region-related  protein is...
MYO9B                 0.039   myosin IXB isoform 2 
MYO9B                 0.039   myosin IXB isoform 1 
OPHN1                 0.038   oligophrenin 1 
ARHGAP23              0.037   Rho GTPase activating protein 23 
BCR                   0.037   breakpoint cluster region isoform 2 
BCR                   0.037   breakpoint cluster region isoform 1 
ARHGAP12              0.037   Rho GTPase activating protein 12 
ARHGAP26              0.035   GTPase regulator associated with the focal adhesion...
ARHGAP26              0.035   GTPase regulator associated with the focal adhesion k...
ARHGAP10              0.035   Rho GTPase activating protein 10 
MYO9A                 0.035   myosin IXA 
SYDE1                 0.035   synapse defective 1, Rho GTPase, homolog 1 
ARHGAP15              0.034   ARHGAP15 
ARHGAP21              0.033   Rho GTPase activating protein 21 
ARHGAP17              0.033   nadrin isoform 1 
ARHGAP17              0.033   nadrin isoform 2 
CDGAP                 0.033   Cdc42 GTPase-activating protein 
FLJ32810              0.032   Rho-type GTPase-activating protein FLJ32810 
SYDE2                 0.032   synapse defective 1, Rho GTPase, homolog 2 
ARHGAP4               0.032   Rho GTPase activating protein 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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