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Search of human proteins with 239758143
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239758143 PREDICTED: similar to hCG1644292 [Homo sapiens]
(115 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239758143 PREDICTED: similar to hCG1644292 [Homo sapiens] 233 2e-62
gi|239743843 PREDICTED: hypothetical protein XP_002342968 [Homo ... 225 5e-60
gi|239743812 PREDICTED: similar to hCG1644292 [Homo sapiens] 225 5e-60
gi|239757619 PREDICTED: similar to hCG1644292 [Homo sapiens] 198 9e-52
gi|239752110 PREDICTED: hypothetical protein XP_002348113 [Homo ... 198 9e-52
gi|239749791 PREDICTED: similar to hCG1644292 [Homo sapiens] 165 6e-42
gi|239755296 PREDICTED: similar to hCG1644292 [Homo sapiens] 164 2e-41
gi|222537750 ankyrin repeat domain 30B [Homo sapiens] 158 8e-40
gi|115495445 ankyrin repeat domain 30A [Homo sapiens] 136 3e-33
gi|32490557 poly(A) polymerase alpha [Homo sapiens] 33 0.063
gi|116235478 establishment of cohesion 1 homolog 1 [Homo sapiens] 32 0.11
gi|194097418 hypothetical protein LOC338094 [Homo sapiens] 32 0.14
gi|58761506 sarcoma antigen NY-SAR-48 isoform b [Homo sapiens] 29 0.70
gi|58761504 sarcoma antigen NY-SAR-48 isoform a [Homo sapiens] 29 0.70
gi|11321642 bromodomain containing protein 1 [Homo sapiens] 29 0.70
gi|38176300 nestin [Homo sapiens] 29 0.92
gi|192807334 arsenate resistance protein 2 isoform d [Homo sapiens] 29 0.92
gi|58331218 arsenate resistance protein 2 isoform a [Homo sapiens] 29 0.92
gi|221316624 dystonin isoform 4 [Homo sapiens] 28 1.6
gi|221316622 dystonin isoform 3 [Homo sapiens] 28 1.6
gi|221316618 dystonin isoform 2 [Homo sapiens] 28 1.6
gi|34577047 dystonin isoform 1 [Homo sapiens] 28 1.6
gi|34577049 dystonin isoform 1eA precursor [Homo sapiens] 28 1.6
gi|33946313 ninein isoform 4 [Homo sapiens] 28 1.6
gi|33946321 ninein isoform 5 [Homo sapiens] 28 1.6
gi|148536871 ninein isoform 1 [Homo sapiens] 28 1.6
gi|148536869 ninein isoform 2 [Homo sapiens] 28 1.6
gi|5803121 protein disulfide isomerase A5 [Homo sapiens] 27 2.7
gi|39812378 RAN binding protein 9 [Homo sapiens] 27 4.5
gi|239757861 PREDICTED: similar to armadillo repeat containing, ... 27 4.5
>gi|239758143 PREDICTED: similar to hCG1644292 [Homo sapiens]
Length = 115
Score = 233 bits (594), Expect = 2e-62
Identities = 115/115 (100%), Positives = 115/115 (100%)
Query: 1 MAESLVERTQHEAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKITRPVKETSEKFAWP 60
MAESLVERTQHEAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKITRPVKETSEKFAWP
Sbjct: 1 MAESLVERTQHEAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKITRPVKETSEKFAWP 60
Query: 61 QERPTKTTWEEKETSVKTECVAGVTSNKTEVLEEGTSKMITCPTKKQLQKQVHMQ 115
QERPTKTTWEEKETSVKTECVAGVTSNKTEVLEEGTSKMITCPTKKQLQKQVHMQ
Sbjct: 61 QERPTKTTWEEKETSVKTECVAGVTSNKTEVLEEGTSKMITCPTKKQLQKQVHMQ 115
>gi|239743843 PREDICTED: hypothetical protein XP_002342968 [Homo
sapiens]
Length = 139
Score = 225 bits (574), Expect = 5e-60
Identities = 112/114 (98%), Positives = 112/114 (98%)
Query: 1 MAESLVERTQHEAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKITRPVKETSEKFAWP 60
MAESLVERT EAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKITRPVKETSEKFAWP
Sbjct: 1 MAESLVERTPDEAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKITRPVKETSEKFAWP 60
Query: 61 QERPTKTTWEEKETSVKTECVAGVTSNKTEVLEEGTSKMITCPTKKQLQKQVHM 114
QERPTKTTWEEKETSVKTECVAGVTSNKTEVLEEGTSKMITCPTKKQLQKQVHM
Sbjct: 61 QERPTKTTWEEKETSVKTECVAGVTSNKTEVLEEGTSKMITCPTKKQLQKQVHM 114
>gi|239743812 PREDICTED: similar to hCG1644292 [Homo sapiens]
Length = 139
Score = 225 bits (574), Expect = 5e-60
Identities = 112/114 (98%), Positives = 112/114 (98%)
Query: 1 MAESLVERTQHEAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKITRPVKETSEKFAWP 60
MAESLVERT EAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKITRPVKETSEKFAWP
Sbjct: 1 MAESLVERTPDEAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKITRPVKETSEKFAWP 60
Query: 61 QERPTKTTWEEKETSVKTECVAGVTSNKTEVLEEGTSKMITCPTKKQLQKQVHM 114
QERPTKTTWEEKETSVKTECVAGVTSNKTEVLEEGTSKMITCPTKKQLQKQVHM
Sbjct: 61 QERPTKTTWEEKETSVKTECVAGVTSNKTEVLEEGTSKMITCPTKKQLQKQVHM 114
>gi|239757619 PREDICTED: similar to hCG1644292 [Homo sapiens]
Length = 118
Score = 198 bits (503), Expect = 9e-52
Identities = 98/105 (93%), Positives = 100/105 (95%)
Query: 1 MAESLVERTQHEAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKITRPVKETSEKFAWP 60
MAESLVERT EAAPLVEGTSDEVQCLGKTISGK E+SA ETPRKITRPVKETSEKFAWP
Sbjct: 1 MAESLVERTPDEAAPLVEGTSDEVQCLGKTISGKTEQSARETPRKITRPVKETSEKFAWP 60
Query: 61 QERPTKTTWEEKETSVKTECVAGVTSNKTEVLEEGTSKMITCPTK 105
QERPTKTTWEEKETSVKTECVAGVTSNK EVLEEGT+KMITCPTK
Sbjct: 61 QERPTKTTWEEKETSVKTECVAGVTSNKIEVLEEGTAKMITCPTK 105
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 74 TSVKTECVAGVTSNKTEVLEEGTSKMITCPTKKQLQK 110
TS + +C+ S KTE T + IT P K+ +K
Sbjct: 20 TSDEVQCLGKTISGKTEQSARETPRKITRPVKETSEK 56
>gi|239752110 PREDICTED: hypothetical protein XP_002348113 [Homo
sapiens]
Length = 118
Score = 198 bits (503), Expect = 9e-52
Identities = 98/105 (93%), Positives = 100/105 (95%)
Query: 1 MAESLVERTQHEAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKITRPVKETSEKFAWP 60
MAESLVERT EAAPLVEGTSDEVQCLGKTISGK E+SA ETPRKITRPVKETSEKFAWP
Sbjct: 1 MAESLVERTPDEAAPLVEGTSDEVQCLGKTISGKTEQSARETPRKITRPVKETSEKFAWP 60
Query: 61 QERPTKTTWEEKETSVKTECVAGVTSNKTEVLEEGTSKMITCPTK 105
QERPTKTTWEEKETSVKTECVAGVTSNK EVLEEGT+KMITCPTK
Sbjct: 61 QERPTKTTWEEKETSVKTECVAGVTSNKIEVLEEGTAKMITCPTK 105
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 74 TSVKTECVAGVTSNKTEVLEEGTSKMITCPTKKQLQK 110
TS + +C+ S KTE T + IT P K+ +K
Sbjct: 20 TSDEVQCLGKTISGKTEQSARETPRKITRPVKETSEK 56
>gi|239749791 PREDICTED: similar to hCG1644292 [Homo sapiens]
Length = 671
Score = 165 bits (418), Expect = 6e-42
Identities = 82/111 (73%), Positives = 93/111 (83%), Gaps = 1/111 (0%)
Query: 1 MAESLVERTQHEAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKITRPVKETSEKFAWP 60
MAESLVE+ EAAPLVEGT+D++QCLGK SGK E+SA ETP+KI R KETSEKFAWP
Sbjct: 552 MAESLVEKPPDEAAPLVEGTADKIQCLGKATSGKFEQSAEETPKKIMRTAKETSEKFAWP 611
Query: 61 -QERPTKTTWEEKETSVKTECVAGVTSNKTEVLEEGTSKMITCPTKKQLQK 110
+ERP K TWEEKETSVKTECVAGV NKTEVLE+GTS+M+TCPTK+ K
Sbjct: 612 AKERPRKITWEEKETSVKTECVAGVIPNKTEVLEKGTSEMLTCPTKETSTK 662
>gi|239755296 PREDICTED: similar to hCG1644292 [Homo sapiens]
Length = 671
Score = 164 bits (414), Expect = 2e-41
Identities = 81/111 (72%), Positives = 93/111 (83%), Gaps = 1/111 (0%)
Query: 1 MAESLVERTQHEAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKITRPVKETSEKFAWP 60
MAESLVE+ EAAPLVEGT+D++QCLGK SGK E+SA ETP+KI R KETS+KFAWP
Sbjct: 552 MAESLVEKPPDEAAPLVEGTADKIQCLGKATSGKFEQSAEETPKKIMRTAKETSKKFAWP 611
Query: 61 -QERPTKTTWEEKETSVKTECVAGVTSNKTEVLEEGTSKMITCPTKKQLQK 110
+ERP K TWEEKETSVKTECVAGV NKTEVLE+GTS+M+TCPTK+ K
Sbjct: 612 AKERPRKITWEEKETSVKTECVAGVIPNKTEVLEKGTSEMLTCPTKETSTK 662
>gi|222537750 ankyrin repeat domain 30B [Homo sapiens]
Length = 1392
Score = 158 bits (400), Expect = 8e-40
Identities = 80/110 (72%), Positives = 89/110 (80%), Gaps = 1/110 (0%)
Query: 2 AESLVERTQHEAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKITRPVKETSEKFAWP- 60
AESL+E+T EAA LVEGTS ++QCLGK SGK E+S ETPRKI RP KETSEKF+WP
Sbjct: 295 AESLLEKTPDEAARLVEGTSAKIQCLGKATSGKFEQSTEETPRKILRPTKETSEKFSWPA 354
Query: 61 QERPTKTTWEEKETSVKTECVAGVTSNKTEVLEEGTSKMITCPTKKQLQK 110
+ER K TWEEKETSVKTECVAGVT NKTEVLE+GTS MI CPTK+ K
Sbjct: 355 KERSRKITWEEKETSVKTECVAGVTPNKTEVLEKGTSNMIACPTKETSTK 404
>gi|115495445 ankyrin repeat domain 30A [Homo sapiens]
Length = 1341
Score = 136 bits (343), Expect = 3e-33
Identities = 76/144 (52%), Positives = 86/144 (59%), Gaps = 35/144 (24%)
Query: 2 AESLVERTQHEAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKITRPVKETSEKFAWPQ 61
AESLVE+T EAA LVEGTSD++QCL K SGK E+SA ETPR+IT P KETSEKF WP
Sbjct: 261 AESLVEKTPDEAASLVEGTSDKIQCLEKATSGKFEQSAEETPREITSPAKETSEKFTWPA 320
Query: 62 E-----------------------------------RPTKTTWEEKETSVKTECVAGVTS 86
+ RP K WE+KET VKT CVA VTS
Sbjct: 321 KGRPRKIAWEKKEDTPREIMSPAKETSEKFTWAAKGRPRKIAWEKKETPVKTGCVARVTS 380
Query: 87 NKTEVLEEGTSKMITCPTKKQLQK 110
NKT+VLE+G SKMI CPTK+ K
Sbjct: 381 NKTKVLEKGRSKMIACPTKESSTK 404
>gi|32490557 poly(A) polymerase alpha [Homo sapiens]
Length = 745
Score = 32.7 bits (73), Expect = 0.063
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 38 SAGETPRKITRP---VKETSEKFAWPQERPTKTTWEEKETSVKTECVAGVTSNKTEVLEE 94
++G KI P VK TS +E P KT EE ETS C+A +KTE E+
Sbjct: 634 TSGNAATKIPTPIVGVKRTSSPHK--EESPKKTKTEEDETSEDANCLALSGHDKTEAKEQ 691
>gi|116235478 establishment of cohesion 1 homolog 1 [Homo sapiens]
Length = 840
Score = 32.0 bits (71), Expect = 0.11
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 14/87 (16%)
Query: 18 EGTSDEVQCLGKTISGKI----EESAGETPRKITRPVKETSEKFAWPQERPTKTTWEE-- 71
E + +E++ GK+ G I EE AGE KE+S+ + +E+PT+ EE
Sbjct: 286 EQSDNELEQAGKSKRGSILQLCEEIAGEIESDNVEVKKESSQMESVKEEKPTEIKLEETS 345
Query: 72 --------KETSVKTECVAGVTSNKTE 90
KET+ +C S KT+
Sbjct: 346 VERQILHQKETNQDVQCNRFFPSRKTK 372
>gi|194097418 hypothetical protein LOC338094 [Homo sapiens]
Length = 585
Score = 31.6 bits (70), Expect = 0.14
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Query: 34 KIEESAGETPRKITRPVKETSEKFAWP--------QERPTKTTWEEKETSVKTECVAGVT 85
K+ E G P+++T PV+ + + AWP ER + T W+ + E + V
Sbjct: 230 KMHELVGGVPQRVTFPVRSSMVRAAWPHFSWLLSQSERYSLTLWQAASDPMSVEDLLYVR 289
Query: 86 SN 87
N
Sbjct: 290 DN 291
>gi|58761506 sarcoma antigen NY-SAR-48 isoform b [Homo sapiens]
Length = 409
Score = 29.3 bits (64), Expect = 0.70
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 16/89 (17%)
Query: 27 LGKTISGKIEESAGETPRKITRPVKETSEKFAWPQERPTKTTWEEKETSVKTECVAGVTS 86
L KTIS K E ++ PRK + + E E E +T + T + +
Sbjct: 118 LAKTISKKPESTSFSAPRKKSPDLSEAMEMM-------------ESQTLLLTLLSVKMEN 164
Query: 87 NKTEVLEEGTSK--MITCPTKKQLQKQVH 113
N E E K +I C K++LQK+ H
Sbjct: 165 NLAE-FERRAEKNLLIMCKEKEKLQKKAH 192
>gi|58761504 sarcoma antigen NY-SAR-48 isoform a [Homo sapiens]
Length = 410
Score = 29.3 bits (64), Expect = 0.70
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 16/89 (17%)
Query: 27 LGKTISGKIEESAGETPRKITRPVKETSEKFAWPQERPTKTTWEEKETSVKTECVAGVTS 86
L KTIS K E ++ PRK + + E E E +T + T + +
Sbjct: 119 LAKTISKKPESTSFSAPRKKSPDLSEAMEMM-------------ESQTLLLTLLSVKMEN 165
Query: 87 NKTEVLEEGTSK--MITCPTKKQLQKQVH 113
N E E K +I C K++LQK+ H
Sbjct: 166 NLAE-FERRAEKNLLIMCKEKEKLQKKAH 193
>gi|11321642 bromodomain containing protein 1 [Homo sapiens]
Length = 1058
Score = 29.3 bits (64), Expect = 0.70
Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 7/111 (6%)
Query: 8 RTQHEAAPLVEGTSDEVQCLGKTISGKIEESAGETPRK-------ITRPVKETSEKFAWP 60
+ ++EA P GT L + +E S PR+ I + +E + +
Sbjct: 98 KKKNEALPSAHGTPASASALPEPKVRIVEYSPPSAPRRPPVYYKFIEKSAEELDNEVEYD 157
Query: 61 QERPTKTTWEEKETSVKTECVAGVTSNKTEVLEEGTSKMITCPTKKQLQKQ 111
+ E K +CV V+ + E L + K C +KQ ++Q
Sbjct: 158 MDEEDYAWLEIVNEKRKGDCVPAVSQSMFEFLMDRFEKESHCENQKQGEQQ 208
>gi|38176300 nestin [Homo sapiens]
Length = 1621
Score = 28.9 bits (63), Expect = 0.92
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 4 SLVERTQHEAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKIT-RPVKETSEKFAWPQE 62
SL E+ Q L + T + LG+ ++ P K+ P+K ++ A
Sbjct: 746 SLEEQDQETLRTLEKETQQRRRSLGEQ-----DQMTLRPPEKVDLEPLKSLDQEIA---- 796
Query: 63 RPTKTTWEEKETSVKTECVAGVTSNKTEVLE 93
RP + +E S+K E V V S +TE+LE
Sbjct: 797 RPLENENQEFLKSLKEESVEAVKSLETEILE 827
>gi|192807334 arsenate resistance protein 2 isoform d [Homo sapiens]
Length = 872
Score = 28.9 bits (63), Expect = 0.92
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 33 GKIEESAGETPRKITRPVKETSEKFAWPQERPTKTTWEEKETSVKTEC 80
G + ES E+ KE +E+ +E+P + WE+ + + EC
Sbjct: 365 GSVSESESESESGQAEEEKEEAEEALKEKEKPKEEEWEKPKDAAGLEC 412
>gi|58331218 arsenate resistance protein 2 isoform a [Homo sapiens]
Length = 876
Score = 28.9 bits (63), Expect = 0.92
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 33 GKIEESAGETPRKITRPVKETSEKFAWPQERPTKTTWEEKETSVKTEC 80
G + ES E+ KE +E+ +E+P + WE+ + + EC
Sbjct: 365 GSVSESESESESGQAEEEKEEAEEALKEKEKPKEEEWEKPKDAAGLEC 412
>gi|221316624 dystonin isoform 4 [Homo sapiens]
Length = 5526
Score = 28.1 bits (61), Expect = 1.6
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 7 ERTQHEAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKITRPVKETSEKFA 58
E+ E L+E +E + + ++ K E+S E + +T +KE +EK A
Sbjct: 1659 EKLSQEDKALIEQKLNEAKIKCEQLNLKAEQSKKELDKVVTTAIKEETEKVA 1710
>gi|221316622 dystonin isoform 3 [Homo sapiens]
Length = 5537
Score = 28.1 bits (61), Expect = 1.6
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 7 ERTQHEAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKITRPVKETSEKFA 58
E+ E L+E +E + + ++ K E+S E + +T +KE +EK A
Sbjct: 1670 EKLSQEDKALIEQKLNEAKIKCEQLNLKAEQSKKELDKVVTTAIKEETEKVA 1721
>gi|221316618 dystonin isoform 2 [Homo sapiens]
Length = 5675
Score = 28.1 bits (61), Expect = 1.6
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 7 ERTQHEAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKITRPVKETSEKFA 58
E+ E L+E +E + + ++ K E+S E + +T +KE +EK A
Sbjct: 1808 EKLSQEDKALIEQKLNEAKIKCEQLNLKAEQSKKELDKVVTTAIKEETEKVA 1859
>gi|34577047 dystonin isoform 1 [Homo sapiens]
Length = 5497
Score = 28.1 bits (61), Expect = 1.6
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 7 ERTQHEAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKITRPVKETSEKFA 58
E+ E L+E +E + + ++ K E+S E + +T +KE +EK A
Sbjct: 1630 EKLSQEDKALIEQKLNEAKIKCEQLNLKAEQSKKELDKVVTTAIKEETEKVA 1681
>gi|34577049 dystonin isoform 1eA precursor [Homo sapiens]
Length = 5171
Score = 28.1 bits (61), Expect = 1.6
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 7 ERTQHEAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKITRPVKETSEKFA 58
E+ E L+E +E + + ++ K E+S E + +T +KE +EK A
Sbjct: 1304 EKLSQEDKALIEQKLNEAKIKCEQLNLKAEQSKKELDKVVTTAIKEETEKVA 1355
>gi|33946313 ninein isoform 4 [Homo sapiens]
Length = 2096
Score = 28.1 bits (61), Expect = 1.6
Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 16/121 (13%)
Query: 1 MAESLVERTQHEAAPLVEGTSD-EVQCLGKTISGKIEESAGETPRKITRPVKETSE---- 55
+ + L+E+ Q E L EG E +C +T +IE +K+T + +
Sbjct: 790 LRKELLEKHQRE---LQEGREKMETECNRRT--SQIEAQFQSDCQKVTERCESALQSLEG 844
Query: 56 ------KFAWPQERPTKTTWEEKETSVKTECVAGVTSNKTEVLEEGTSKMITCPTKKQLQ 109
K Q+R K+ WE ++ + EC K + E T+ ++ ++ L+
Sbjct: 845 RYRQELKDLQEQQREEKSQWEFEKDELTQECAEAQELLKETLKREKTTSLVLTQEREMLE 904
Query: 110 K 110
K
Sbjct: 905 K 905
>gi|33946321 ninein isoform 5 [Homo sapiens]
Length = 2090
Score = 28.1 bits (61), Expect = 1.6
Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 16/121 (13%)
Query: 1 MAESLVERTQHEAAPLVEGTSD-EVQCLGKTISGKIEESAGETPRKITRPVKETSE---- 55
+ + L+E+ Q E L EG E +C +T +IE +K+T + +
Sbjct: 784 LRKELLEKHQRE---LQEGREKMETECNRRT--SQIEAQFQSDCQKVTERCESALQSLEG 838
Query: 56 ------KFAWPQERPTKTTWEEKETSVKTECVAGVTSNKTEVLEEGTSKMITCPTKKQLQ 109
K Q+R K+ WE ++ + EC K + E T+ ++ ++ L+
Sbjct: 839 RYRQELKDLQEQQREEKSQWEFEKDELTQECAEAQELLKETLKREKTTSLVLTQEREMLE 898
Query: 110 K 110
K
Sbjct: 899 K 899
>gi|148536871 ninein isoform 1 [Homo sapiens]
Length = 2046
Score = 28.1 bits (61), Expect = 1.6
Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 16/121 (13%)
Query: 1 MAESLVERTQHEAAPLVEGTSD-EVQCLGKTISGKIEESAGETPRKITRPVKETSE---- 55
+ + L+E+ Q E L EG E +C +T +IE +K+T + +
Sbjct: 784 LRKELLEKHQRE---LQEGREKMETECNRRT--SQIEAQFQSDCQKVTERCESALQSLEG 838
Query: 56 ------KFAWPQERPTKTTWEEKETSVKTECVAGVTSNKTEVLEEGTSKMITCPTKKQLQ 109
K Q+R K+ WE ++ + EC K + E T+ ++ ++ L+
Sbjct: 839 RYRQELKDLQEQQREEKSQWEFEKDELTQECAEAQELLKETLKREKTTSLVLTQEREMLE 898
Query: 110 K 110
K
Sbjct: 899 K 899
>gi|148536869 ninein isoform 2 [Homo sapiens]
Length = 2133
Score = 28.1 bits (61), Expect = 1.6
Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 16/121 (13%)
Query: 1 MAESLVERTQHEAAPLVEGTSD-EVQCLGKTISGKIEESAGETPRKITRPVKETSE---- 55
+ + L+E+ Q E L EG E +C +T +IE +K+T + +
Sbjct: 784 LRKELLEKHQRE---LQEGREKMETECNRRT--SQIEAQFQSDCQKVTERCESALQSLEG 838
Query: 56 ------KFAWPQERPTKTTWEEKETSVKTECVAGVTSNKTEVLEEGTSKMITCPTKKQLQ 109
K Q+R K+ WE ++ + EC K + E T+ ++ ++ L+
Sbjct: 839 RYRQELKDLQEQQREEKSQWEFEKDELTQECAEAQELLKETLKREKTTSLVLTQEREMLE 898
Query: 110 K 110
K
Sbjct: 899 K 899
>gi|5803121 protein disulfide isomerase A5 [Homo sapiens]
Length = 519
Score = 27.3 bits (59), Expect = 2.7
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 45 KITRPVKETSEKFA-WPQER----PTKTTWEEKETSV 76
K PV T +KF W Q P + TWEE++TSV
Sbjct: 363 KYAVPVLRTKKKFLEWMQNPEAPPPPEPTWEEQQTSV 399
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 26.6 bits (57), Expect = 4.5
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 16 LVEGTSDEVQCLGKTISGKIEESAGETPRKITRP 49
+V GT EV+CLG S K ++S +PR + P
Sbjct: 452 MVNGTDSEVRCLGGR-SPKSQDSYPVSPRPFSSP 484
>gi|239757861 PREDICTED: similar to armadillo repeat containing,
X-linked 4 [Homo sapiens]
Length = 2382
Score = 26.6 bits (57), Expect = 4.5
Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
Query: 6 VERTQHEAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKITRPVKETSEKFAWPQERPT 65
+ R +A +V G E Q K ++G + + T ++ +E + K A Q
Sbjct: 188 IHRANSQAKAMV-GAEPETQSESKVVAGTLVMTEAVTLTEVKAKAREVAMKEAVTQTDAE 246
Query: 66 KTTWEEKETSVKTECVAGVTSNKTEVLEEGTSK 98
+KE +T+ A KTE E ++
Sbjct: 247 AGKIVKKEAVTQTKAKAWALVAKTEAKREAMTQ 279
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.305 0.120 0.334
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,439,041
Number of Sequences: 37866
Number of extensions: 185013
Number of successful extensions: 471
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 397
Number of HSP's gapped (non-prelim): 62
length of query: 115
length of database: 18,247,518
effective HSP length: 85
effective length of query: 30
effective length of database: 15,028,908
effective search space: 450867240
effective search space used: 450867240
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.