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Search of human proteins with 239758008
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239758008 PREDICTED: hypothetical protein XP_002346266 [Homo
sapiens]
(316 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239758008 PREDICTED: hypothetical protein XP_002346266 [Homo ... 646 0.0
gi|239758117 PREDICTED: hypothetical protein [Homo sapiens] 380 e-105
gi|239752579 PREDICTED: hypothetical protein XP_002348295 [Homo ... 375 e-104
gi|239758151 PREDICTED: hypothetical protein XP_002346314 [Homo ... 357 8e-99
gi|239752632 PREDICTED: hypothetical protein XP_002347697 [Homo ... 323 2e-88
gi|239741651 PREDICTED: hypothetical protein XP_002342270 [Homo ... 311 4e-85
gi|239753329 PREDICTED: hypothetical protein XP_002345623 [Homo ... 269 2e-72
gi|239756562 PREDICTED: hypothetical protein [Homo sapiens] 259 2e-69
gi|239754599 PREDICTED: hypothetical protein [Homo sapiens] 259 3e-69
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 132 5e-31
gi|239754474 PREDICTED: similar to mucin [Homo sapiens] 50 3e-06
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 49 8e-06
gi|153070260 myristoylated alanine-rich protein kinase C substra... 48 1e-05
gi|239743051 PREDICTED: hypothetical protein XP_002342747 [Homo ... 48 1e-05
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 47 2e-05
gi|5174449 H1 histone family, member X [Homo sapiens] 47 3e-05
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 47 3e-05
gi|122937273 hypothetical protein LOC131149 [Homo sapiens] 46 5e-05
gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens] 45 8e-05
gi|156616290 collagen type VI alpha 6 [Homo sapiens] 45 1e-04
gi|24475863 H1 histone family, member O, oocyte-specific [Homo s... 44 1e-04
gi|183583553 collagen, type XXIX, alpha 1 [Homo sapiens] 44 2e-04
gi|239756028 PREDICTED: hypothetical protein [Homo sapiens] 44 2e-04
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 44 2e-04
gi|60097902 filaggrin [Homo sapiens] 43 3e-04
gi|9966841 cell death regulator aven [Homo sapiens] 43 3e-04
gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens] 43 4e-04
gi|169160983 PREDICTED: hypothetical protein [Homo sapiens] 42 5e-04
gi|31652242 transcription factor 20 isoform 2 [Homo sapiens] 42 5e-04
gi|31652244 transcription factor 20 isoform 1 [Homo sapiens] 42 5e-04
>gi|239758008 PREDICTED: hypothetical protein XP_002346266 [Homo
sapiens]
Length = 316
Score = 646 bits (1667), Expect = 0.0
Identities = 316/316 (100%), Positives = 316/316 (100%)
Query: 1 MSSPVLEPNPGPRPRYLHSPYLLLGEVLGHSALGAQPAQAANGDADELLELPALLQLPAG 60
MSSPVLEPNPGPRPRYLHSPYLLLGEVLGHSALGAQPAQAANGDADELLELPALLQLPAG
Sbjct: 1 MSSPVLEPNPGPRPRYLHSPYLLLGEVLGHSALGAQPAQAANGDADELLELPALLQLPAG 60
Query: 61 CDPCASLRDSRVTPATALLPLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRS 120
CDPCASLRDSRVTPATALLPLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRS
Sbjct: 61 CDPCASLRDSRVTPATALLPLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRS 120
Query: 121 DPRHCISQDASRSGSRVCRSRPQTRGGGGKKPRRQKDAAAGAKSRGGKKPRRGRKPRRRG 180
DPRHCISQDASRSGSRVCRSRPQTRGGGGKKPRRQKDAAAGAKSRGGKKPRRGRKPRRRG
Sbjct: 121 DPRHCISQDASRSGSRVCRSRPQTRGGGGKKPRRQKDAAAGAKSRGGKKPRRGRKPRRRG 180
Query: 181 QKSTAAGAKSRGEGGKKPRQQKPAAAGAKSGLGDKKSRRWGRKKPGRWGQEAVAGETCGG 240
QKSTAAGAKSRGEGGKKPRQQKPAAAGAKSGLGDKKSRRWGRKKPGRWGQEAVAGETCGG
Sbjct: 181 QKSTAAGAKSRGEGGKKPRQQKPAAAGAKSGLGDKKSRRWGRKKPGRWGQEAVAGETCGG 240
Query: 241 GGKKPQKAAAPGAKSHKKPRRQWQKAAAEKVAVAGAESCGGRGQKAAAARAKSGGFGGKK 300
GGKKPQKAAAPGAKSHKKPRRQWQKAAAEKVAVAGAESCGGRGQKAAAARAKSGGFGGKK
Sbjct: 241 GGKKPQKAAAPGAKSHKKPRRQWQKAAAEKVAVAGAESCGGRGQKAAAARAKSGGFGGKK 300
Query: 301 QRRRGQRAPKSRGGRG 316
QRRRGQRAPKSRGGRG
Sbjct: 301 QRRRGQRAPKSRGGRG 316
>gi|239758117 PREDICTED: hypothetical protein [Homo sapiens]
Length = 465
Score = 380 bits (975), Expect = e-105
Identities = 210/318 (66%), Positives = 235/318 (73%), Gaps = 21/318 (6%)
Query: 1 MSSPVLEPNPGPRPRYLHSPYLLLGEVLGHSALGAQPAQAANGDADELLELPALLQLPAG 60
MSSPVLEP+PGPR YLH PYLLLGEVLGHSALGAQ AQ ANGDADELLELPALLQ P G
Sbjct: 1 MSSPVLEPSPGPRSPYLHGPYLLLGEVLGHSALGAQHAQPANGDADELLELPALLQHPTG 60
Query: 61 CDPCASLRDSRVTPATALLPLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRS 120
CDPCASLRDSRVTPATALL LSHRGRAQRRS+ AAAAQE+S GRGCLGKEPP++ESWTRS
Sbjct: 61 CDPCASLRDSRVTPATALLLLSHRGRAQRRSIQAAAAQEQSTGRGCLGKEPPSQESWTRS 120
Query: 121 DPRHCISQDASRSGSRVCRSRPQTRGGGGKKPRRQKDAAAGAKSRGGKKPRRGRKPRRRG 180
DPR C+SQDA RSGSRVCRSRPQTRGGGGK+PRRQK A AGAKSRGG+ G+KP+RRG
Sbjct: 121 DPRRCLSQDAVRSGSRVCRSRPQTRGGGGKQPRRQKAAVAGAKSRGGE----GKKPQRRG 176
Query: 181 QKSTAAGAKSRGE-----GGKKPRQQKPAAAGAKSGLGDKKSRRWGRKKPGRWGQEAVAG 235
QK+ AGAKSRG GGKK R+ + AAGAK G K+ RR G+K A
Sbjct: 177 QKAATAGAKSRGGGVRSLGGKKMRRGQKGAAGAKRCGGGKQPRRRGQK----------AS 226
Query: 236 ETCGGGGKKPQKAAAPGAKSHKKPRRQWQKAAAEKVAVAGAESCGGRGQKAAAARAKSGG 295
++ G + PQKAAA G KS KK R++ QKAAA A ++CGG G+K K
Sbjct: 227 KSGGVRCQTPQKAAAQGVKSRKKLRQRGQKAAAAGQEAAAGKTCGGGGEKHRGGGDKKP- 285
Query: 296 FGGKKQRRRGQRAPKSRG 313
K R RGQ+A + G
Sbjct: 286 -LRKNSRWRGQKAAAAGG 302
Score = 39.3 bits (90), Expect = 0.005
Identities = 51/159 (32%), Positives = 64/159 (40%), Gaps = 69/159 (43%)
Query: 172 RGRKPRRRGQKSTAAGAKSRGEG--GKKPRQQKPAAAGAKSGLGDKKSRRWGRKKPGRW- 228
RGR RR Q + AA +S G G GK+P Q+ W R P R
Sbjct: 84 RGRAQRRSIQ-AAAAQEQSTGRGCLGKEPPSQES----------------WTRSDPRRCL 126
Query: 229 GQEAVAG---------ETCGGGGKKPQKAAAPGAKSHKKPRRQWQKAAAEKVAVAGAESC 279
Q+AV +T GGGGK+P++ +K AVAGA+S
Sbjct: 127 SQDAVRSGSRVCRSRPQTRGGGGKQPRR---------------------QKAAVAGAKSR 165
Query: 280 GGRGQKAAAARAKSGGFGGKKQRRRGQRA----PKSRGG 314
GG G+ K Q RRGQ+A KSRGG
Sbjct: 166 GGEGK--------------KPQ-RRGQKAATAGAKSRGG 189
>gi|239752579 PREDICTED: hypothetical protein XP_002348295 [Homo
sapiens]
Length = 240
Score = 375 bits (963), Expect = e-104
Identities = 199/264 (75%), Positives = 212/264 (80%), Gaps = 24/264 (9%)
Query: 1 MSSPVLEPNPGPRPRYLHSPYLLLGEVLGHSALGAQPAQAANGDADELLELPALLQLPAG 60
MSSPVLEPNPGPRPRYLH PYLLLGEVLGHSALGAQPAQAANGDADELLELPALLQLPAG
Sbjct: 1 MSSPVLEPNPGPRPRYLHGPYLLLGEVLGHSALGAQPAQAANGDADELLELPALLQLPAG 60
Query: 61 CDPCASLRDSRVTPATALLPLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRS 120
CDPCASLRDSRVTPATALLPLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRS
Sbjct: 61 CDPCASLRDSRVTPATALLPLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRS 120
Query: 121 DPRHCISQDASRSGSRVCRSRPQTRGGGGKKPRRQKDAAAGAKSRGGKKPRRGRKPRRRG 180
DPRHCISQDASRSGSRVCRSRPQTRG GGKK R++ + AA K+ G+ + GR
Sbjct: 121 DPRHCISQDASRSGSRVCRSRPQTRGSGGKKLRQRGEKAAAVKTCSGRSKKPGR------ 174
Query: 181 QKSTAAGAKSRGEGGKKPRQQKPAAAGAKSGLGDKKSRRWGRKKPGRWGQEAVAGETCGG 240
QK+ GAKSRG GKKP QK AAAGAKS G G KK GRWG++
Sbjct: 175 QKAAVMGAKSRGGRGKKP--QKAAAAGAKSCNG-------GGKKLGRWGKKP-------- 217
Query: 241 GGKKPQKAAAPGAKSHKKPRRQWQ 264
G++ QKAA GAKS KKP+R+ Q
Sbjct: 218 -GRRGQKAAVTGAKSRKKPQRRGQ 240
Score = 33.1 bits (74), Expect = 0.33
Identities = 38/147 (25%), Positives = 56/147 (38%), Gaps = 43/147 (29%)
Query: 172 RGRKPRRRGQKSTAAGAKSRGEG--GKKPRQQKPAAAGAKSGLGDKKSRRWGRKKPGRWG 229
RGR +RR + AA +S G G GK+P ++ W R P
Sbjct: 84 RGRA-QRRSMHAAAAQERSLGRGCLGKEPPNRES----------------WTRSDP---- 122
Query: 230 QEAVAGETCGGGGKKPQKAAAPGAKSHKKPRRQWQKAAAEKVAVAGAESCGGRGQKAAAA 289
+ ++ + G + + KK R++ +KAAA K +C GR +K
Sbjct: 123 RHCISQDASRSGSRVCRSRPQTRGSGGKKLRQRGEKAAAVK-------TCSGRSKKPGRQ 175
Query: 290 RAKSGGFGGKKQRRRGQRAPKSRGGRG 316
+A G KSRGGRG
Sbjct: 176 KAAVMG-------------AKSRGGRG 189
>gi|239758151 PREDICTED: hypothetical protein XP_002346314 [Homo
sapiens]
Length = 321
Score = 357 bits (916), Expect = 8e-99
Identities = 219/335 (65%), Positives = 233/335 (69%), Gaps = 39/335 (11%)
Query: 1 MSSPVLEPNPGPRPRYLHSPYLLLGEVLGHSALGAQPAQAANGDADELLELPALLQLPAG 60
MSSPVLEP+PGP+ YLH YLLLGEVLGHSALGAQ AQ ANGDADELLELPALLQ AG
Sbjct: 1 MSSPVLEPSPGPQSPYLHGLYLLLGEVLGHSALGAQHAQPANGDADELLELPALLQHLAG 60
Query: 61 CDPCASLRDSRVTPATALLPLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRS 120
CDPCASLRDS VTPATALL LSHRG+ QRRSM AAAAQE+SLGRGCLGKEPP ES TRS
Sbjct: 61 CDPCASLRDSCVTPATALLLLSHRGQVQRRSMQAAAAQEQSLGRGCLGKEPPKWESSTRS 120
Query: 121 DPRHCISQDASRSGSRVCRSRPQTRGGGGKKPRR-QKDAAAGAKSR-GGKKPRRGRKPRR 178
PR C+SQDASRSGSRVCRSRPQTRGGGGKKPRR QK A AGAKSR GG + R G+K RR
Sbjct: 121 GPRRCLSQDASRSGSRVCRSRPQTRGGGGKKPRRGQKAATAGAKSRGGGVRSRGGKKIRR 180
Query: 179 RGQKSTAAGAKSRGEGGKKPRQQKPAAAGAKSGLGDKKSRRWGRKKPGRWGQEAVAGETC 238
RGQK+ AAGAKS G GGKKP QK A GA RR G KK R G++A A
Sbjct: 181 RGQKAAAAGAKSCGGGGKKP--QKARAVGA---------RRRGWKKLRRRGKKAAA---- 225
Query: 239 GGGGKKPQKAAAPGAKSHKKPRRQWQKAAAEKVAVAGAESC-GGRGQKAAAARAKS---- 293
GG K +K G K KKPRR+ QKAAA AG E C R QKAAA AKS
Sbjct: 226 AGGEKAGKKLRQQGEKGRKKPRRRGQKAAA-----AGGERCKKPRRQKAAAVSAKSPKKP 280
Query: 294 ----------GGFGGKKQRRRGQR--APKSRGGRG 316
G K +RRGQ+ A KSR G G
Sbjct: 281 RRRVLNSARLGAESRKNPQRRGQKSMAAKSRVGSG 315
>gi|239752632 PREDICTED: hypothetical protein XP_002347697 [Homo
sapiens]
Length = 231
Score = 323 bits (827), Expect = 2e-88
Identities = 178/234 (76%), Positives = 190/234 (81%), Gaps = 5/234 (2%)
Query: 1 MSSPVLEPNPGPRPRYLHSPYLLLGEVLGHSALGAQPAQAANGDADELLELPALLQLPAG 60
MSSPVLEP+PGP+ YLH YLLLGEVLGHSALGAQ AQ ANGDADELLELPALLQ AG
Sbjct: 1 MSSPVLEPSPGPQSPYLHGLYLLLGEVLGHSALGAQHAQPANGDADELLELPALLQHLAG 60
Query: 61 CDPCASLRDSRVTPATALLPLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRS 120
CDPCASLRDS VTPATALL LSHRG+ QRRSM AAAAQE+SLGRGCLGKEPP ES TRS
Sbjct: 61 CDPCASLRDSCVTPATALLLLSHRGQVQRRSMQAAAAQEQSLGRGCLGKEPPKWESSTRS 120
Query: 121 DPRHCISQDASRSGSRVCRSRPQTRGGGGKKPRR-QKDAAAGAKSR-GGKKPRRGRKPRR 178
PR C+SQDASRSGSRVCRSRPQTRGGGGKKPRR QK A AGAKSR GG + R G+K RR
Sbjct: 121 GPRRCLSQDASRSGSRVCRSRPQTRGGGGKKPRRGQKAATAGAKSRGGGVRSRGGKKIRR 180
Query: 179 RGQKSTAAGAKSRGEGGKKPRQQKPAAAGAKSGLGDKKSRRWGRKKPGRWGQEA 232
RGQK+ AAGAKS G GGKKP QK A GA+ G KK RR G+K G++A
Sbjct: 181 RGQKAAAAGAKSCGGGGKKP--QKARAVGARR-RGWKKLRRRGKKAAAAGGEKA 231
Score = 72.0 bits (175), Expect = 6e-13
Identities = 62/153 (40%), Positives = 78/153 (50%), Gaps = 28/153 (18%)
Query: 177 RRRGQKSTAAGAKSRGEG--GKKP-RQQKPAAAGAKSGLGDKKSRRWGRKKPGRWGQEAV 233
+RR ++ AA +S G G GK+P + + +G + L SR R R
Sbjct: 88 QRRSMQAAAAQEQSLGRGCLGKEPPKWESSTRSGPRRCLSQDASRSGSRVCRSR------ 141
Query: 234 AGETCGGGGKKP---QKAAAPGAKSH---------KKPRRQWQKAAAEKVAVAGAESCGG 281
+T GGGGKKP QKAA GAKS KK RR+ QKAAA AGA+SCGG
Sbjct: 142 -PQTRGGGGKKPRRGQKAATAGAKSRGGGVRSRGGKKIRRRGQKAAA-----AGAKSCGG 195
Query: 282 RGQKAAAARAKSG-GFGGKKQRRRGQRAPKSRG 313
G+K ARA G KK RRRG++A + G
Sbjct: 196 GGKKPQKARAVGARRRGWKKLRRRGKKAAAAGG 228
Score = 28.9 bits (63), Expect = 6.2
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 262 QWQKAAAEKVAVAGAESCGGRGQKAAAARAKSGGFGGKKQRRRGQRA----PKSRGG 314
+W+ + ++ G + +R ++ G GGKK RRGQ+A KSRGG
Sbjct: 113 KWESSTRSGPRRCLSQDASRSGSRVCRSRPQTRGGGGKKP-RRGQKAATAGAKSRGG 168
>gi|239741651 PREDICTED: hypothetical protein XP_002342270 [Homo
sapiens]
Length = 337
Score = 311 bits (798), Expect = 4e-85
Identities = 190/294 (64%), Positives = 203/294 (69%), Gaps = 31/294 (10%)
Query: 20 PYLLLGEVLGHSALGAQPAQAANGDADELLELPALLQLPAGCDPCASLRDSRVTPATALL 79
PYLLLGEVLGHSALGAQPAQAANGDADELLELPALLQ PAG PCASLRDSRVTPATALL
Sbjct: 13 PYLLLGEVLGHSALGAQPAQAANGDADELLELPALLQRPAGRGPCASLRDSRVTPATALL 72
Query: 80 PLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRSDPRHCISQDASRSGSRVCR 139
LSH RAQRRSM AAAAQERS GR LGKEP RESWTRS P C+SQDA R+GS+VC
Sbjct: 73 LLSHCSRAQRRSMRAAAAQERSPGRRRLGKEPLIRESWTRSAPWRCLSQDAGRAGSQVCG 132
Query: 140 SRPQTRGGGGKKPRRQKDAAAGAKSRGGKKPRRGRKPRRRGQKSTAAGAKSRGEGGKKPR 199
S PQTRGGGGKK +RQK GAKSR +KP+ GQK+ AGAKS G GGKKP
Sbjct: 133 SSPQTRGGGGKKLQRQKATVMGAKSR--------KKPQHWGQKAATAGAKSPGGGGKKPG 184
Query: 200 QQKPAAAGAKSGLGDKKSRRWGRKKPGRWGQEAVAGETCGGGGKKPQKAAAPGAK----S 255
Q+KPAA G K+ KSR G KKP R + G K PQKAAA GAK
Sbjct: 185 QEKPAATGEKTRAA--KSRGGGGKKPRR-------EKPAAAGAKNPQKAAAAGAKFREAG 235
Query: 256 HKKPRRQWQKAAAEKVAVAGAESCGGRG---QKAAAARAKSGGFGGKKQRRRGQ 306
+KPR + QKA AGA+S GG G QK AAA AK GGKK RRRGQ
Sbjct: 236 GRKPRWRGQKATE-----AGAKSRGGGGIKPQKPAAAGAKI--HGGKKPRRRGQ 282
>gi|239753329 PREDICTED: hypothetical protein XP_002345623 [Homo
sapiens]
Length = 351
Score = 269 bits (688), Expect = 2e-72
Identities = 168/316 (53%), Positives = 192/316 (60%), Gaps = 46/316 (14%)
Query: 20 PYLLLGEVLGHSALGAQPAQAANGDADELLELPALLQLPAGCDPCASLRDSRVTPATALL 79
PYLLLGE +GHSALGAQP QAA GDADELLELPALLQ PAG PCA+LR +TPA ALL
Sbjct: 13 PYLLLGEAVGHSALGAQPVQAAEGDADELLELPALLQRPAGRGPCATLRSHPITPAPALL 72
Query: 80 PLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRSDPRHCISQDASRSGSRVCR 139
LSH AQRRSM A A+ S GRG LGKEP RESWTRS PR C QDASR+GSRVCR
Sbjct: 73 LLSHSLPAQRRSMQATVAKAGSPGRGRLGKEPRRRESWTRSAPRRCPYQDASRAGSRVCR 132
Query: 140 SRPQTRGGGGKKPRRQKDAAAGAKSRGGKKPR----------RGRKPRRRGQKSTAAGAK 189
SRPQ RGGG KKPRR+ AA ++ GGKKPR + RKPRRRG+++ AAG K
Sbjct: 133 SRPQNRGGGDKKPRRRGQKAAKSRGGGGKKPRGQKAAGAGAKKHRKPRRRGERAAAAGGK 192
Query: 190 SRGEGGKKPRQQKPAAAGAKSGLGDKKSRRWGRKKPGRWGQEAVAGETCGGGGKK--PQK 247
+ QK AAA ++ G G K + G+K R GQ+A GGG KK QK
Sbjct: 193 ---------KLQKAAAAKSRGGGGKKTAAAGGKKPRRRRGQKAAKSR--GGGDKKLERQK 241
Query: 248 AAAPGAKSH--KKPRRQWQKAAA---------------EKVAVAGAESCGGRGQKAAAAR 290
AA G KS KKP R +K +K A AGA+S GGRG+K A
Sbjct: 242 AALTGVKSRGDKKPLRGGKKQRERGQNTKSRGGGGEKPQKAAAAGAKSRGGRGEKPQKAE 301
Query: 291 AKSGGFGGKKQRRRGQ 306
A G+ Q RR +
Sbjct: 302 A------GQGQNRRNE 311
>gi|239756562 PREDICTED: hypothetical protein [Homo sapiens]
Length = 235
Score = 259 bits (663), Expect = 2e-69
Identities = 155/236 (65%), Positives = 170/236 (72%), Gaps = 27/236 (11%)
Query: 6 LEPNPGPRPRYLHSPYLLLGEVLGHSALGAQPAQAANGDADELLELPALLQLPAGCDPCA 65
L N GP YL PYLLLGEV+GHSALGAQPAQAA DE+LELPALLQ PAG PCA
Sbjct: 3 LRQNRGPHTPYLQGPYLLLGEVVGHSALGAQPAQAA----DEVLELPALLQRPAGRRPCA 58
Query: 66 SLRDSRVTPATALLPLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRSDPRHC 125
S R R+TPATALL LSHRGRA+RRSM AAAA+ S GR +GK PP+RESWTRS P+ C
Sbjct: 59 SHRGRRITPATALLLLSHRGRAERRSMQAAAAKAGSPGRRRVGKGPPSRESWTRSAPQRC 118
Query: 126 ISQDASRSGSRVCRSRPQTRGG-------------GGKKPRRQKDAAAGAKSRGGKKPRR 172
SQDA R+GSRVCRSRPQ+RGG GGK+PRRQK AAAGAKSRGGK
Sbjct: 119 PSQDAGRAGSRVCRSRPQSRGGQKAAASGAKRRGVGGKEPRRQKPAAAGAKSRGGKS--- 175
Query: 173 GRKPRRRGQKSTAAGAKSRGEGGKKPRQQKPAAAGAKS--GLGDKKSRRWGRKKPG 226
+KPRRRGQK AA AK+ G GG KP QK AAAGAK+ G G KK RR GR+ G
Sbjct: 176 HKKPRRRGQK--AAPAKNSGGGGNKP--QKAAAAGAKNRGGGGGKKPRR-GRRLLG 226
Score = 62.8 bits (151), Expect = 4e-10
Identities = 62/174 (35%), Positives = 75/174 (43%), Gaps = 42/174 (24%)
Query: 173 GRKP--RRRGQKSTAAGA----KSRGEGGKKPRQQKPAAAGA----KSGLGDKKSRRWGR 222
GR+P RG++ T A A RG ++ Q A AG+ + G G W R
Sbjct: 53 GRRPCASHRGRRITPATALLLLSHRGRAERRSMQAAAAKAGSPGRRRVGKGPPSRESWTR 112
Query: 223 KKP--------GRWGQEAVAGETCGGGGKKPQKAAAPGAKSH----KKPRRQWQKAAAEK 270
P GR G GG QKAAA GAK K+PRRQ K
Sbjct: 113 SAPQRCPSQDAGRAGSRVCRSRPQSRGG---QKAAASGAKRRGVGGKEPRRQ-------K 162
Query: 271 VAVAGAESCGG--------RGQKAAAARAKSGGFGGKKQRRRGQRAPKSRGGRG 316
A AGA+S GG RGQKAA A K+ G GG K ++ K+RGG G
Sbjct: 163 PAAAGAKSRGGKSHKKPRRRGQKAAPA--KNSGGGGNKPQKAAAAGAKNRGGGG 214
>gi|239754599 PREDICTED: hypothetical protein [Homo sapiens]
Length = 294
Score = 259 bits (661), Expect = 3e-69
Identities = 157/262 (59%), Positives = 175/262 (66%), Gaps = 38/262 (14%)
Query: 20 PYLLLGEVLGHSALGAQPAQAANGDADELLELPALLQLPAGCDPCASLRDSRVTPATALL 79
PYLLLGEV+GHSALGAQPAQAANGDADELLEL ALLQ AG PCA+L +TPATALL
Sbjct: 13 PYLLLGEVVGHSALGAQPAQAANGDADELLELSALLQPRAGRGPCATLSGRCITPATALL 72
Query: 80 PLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRSDPRHCISQDASRSGSRVCR 139
LSHR RAQ R M A AA+ S G G LGKEPP+RESWT S PR C QDASR+GS VCR
Sbjct: 73 LLSHRLRAQCRPMQATAAEAGSPGLGRLGKEPPSRESWTGSAPRRCPCQDASRAGSGVCR 132
Query: 140 SRPQTRGGGGKKPRRQKDAAAGAKSRGGKKPRRGRKPRRRGQKSTAAGAKSRGEGGKKPR 199
SRPQ+RGGG +KPRRQ K+ AA AKS G GGKKPR
Sbjct: 133 SRPQSRGGGSRKPRRQ--------------------------KAAAAQAKSLGGGGKKPR 166
Query: 200 QQKPAAAGAKSGLGDKKSRRWGRKKPGRWGQEAVAGETCGGGGKKPQKAAAPGAKSHKKP 259
+QK AAAG K+ ++SRR G KKP R GQ+AV G G KKPQKAAA G K+ P
Sbjct: 167 RQKCAAAGQKAAA--EESRRGGGKKPRRGGQKAV-----GAGAKKPQKAAAAGTKT---P 216
Query: 260 RRQWQKAAAEKVAVAGAESCGG 281
RR+ QKAA K AV G ++ G
Sbjct: 217 RRRRQKAA--KAAVWGQKAAAG 236
Score = 55.5 bits (132), Expect = 6e-08
Identities = 56/154 (36%), Positives = 73/154 (47%), Gaps = 31/154 (20%)
Query: 179 RGQKSTAAGAKSRGEG--GKKPRQQKPAAAGAKSGLGDKKSRRWG----RKKPGRWGQEA 232
R ++TAA A S G G GK+P ++ A + + R G R +P
Sbjct: 83 RPMQATAAEAGSPGLGRLGKEPPSRESWTGSAPRRCPCQDASRAGSGVCRSRP------- 135
Query: 233 VAGETCGGGGKKP--QKAAAPGAKS----HKKPRRQWQKAAAEKVAVAGAESCGGR---- 282
++ GGG +KP QKAAA AKS KKPRRQ AA +K A + GG+
Sbjct: 136 ---QSRGGGSRKPRRQKAAAAQAKSLGGGGKKPRRQKCAAAGQKAAAEESRRGGGKKPRR 192
Query: 283 -GQKAAAARA----KSGGFGGKKQRRRGQRAPKS 311
GQKA A A K+ G K RRR Q+A K+
Sbjct: 193 GGQKAVGAGAKKPQKAAAAGTKTPRRRRQKAAKA 226
Score = 45.8 bits (107), Expect = 5e-05
Identities = 56/165 (33%), Positives = 69/165 (41%), Gaps = 41/165 (24%)
Query: 169 KPRRGRKP--RRRGQKSTAAGA----KSRGEGGKKPRQQKPAAAGAKSGLGDKKSRRWGR 222
+PR GR P G+ T A A R +P Q A AG+ GLG R G+
Sbjct: 49 QPRAGRGPCATLSGRCITPATALLLLSHRLRAQCRPMQATAAEAGSP-GLG-----RLGK 102
Query: 223 KKPGRWGQEAVAGETC-------GGGGKKPQKAAAPGAKSHKKPRRQWQKAAAEKVAVAG 275
+ P R A C G G + + G S +KPRRQ K A A
Sbjct: 103 EPPSRESWTGSAPRRCPCQDASRAGSGVCRSRPQSRGGGS-RKPRRQ-------KAAAAQ 154
Query: 276 AESCGG------------RGQKAAAARAKSGGFGGKKQRRRGQRA 308
A+S GG GQKAAA ++ G GGKK RR GQ+A
Sbjct: 155 AKSLGGGGKKPRRQKCAAAGQKAAAEESRRG--GGKKPRRGGQKA 197
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 132 bits (331), Expect = 5e-31
Identities = 125/340 (36%), Positives = 152/340 (44%), Gaps = 109/340 (32%)
Query: 84 RGRAQRRSMHAAA-AQERSLG----------RGCLGKEP----PNRESWTR--SDPRHCI 126
RG+ RR +AA A+ R G RG K+P P R + + PR
Sbjct: 364 RGKKPRRQKASAAGAKSRGGGDKKGLREAKRRGDGRKKPRWQNPRRRAQKAPAAKPRGGG 423
Query: 127 SQDASRSGSRVCRSRP-QTRGGGGKKPRR------QKDAAAGAKSRGGKKP--------- 170
S+ R G + +SR ++R GGGKKPRR QK A AGA+SRG KK
Sbjct: 424 SKKPRRRGPKAAKSRGGKSRSGGGKKPRRRGQKARQKAAEAGAESRGDKKQGRQKASAAG 483
Query: 171 -----------------RRGRKPRRRGQKSTAAGAKSRGEGGKKPRQQKPAAAGAKS--- 210
RRG+K G+K+TAAGAKSRG K+PR+QKPA AGAKS
Sbjct: 484 TKSRGGGLKSHSGKNLWRRGQKAEAAGEKATAAGAKSRGR--KQPRRQKPAVAGAKSRVG 541
Query: 211 -------------------GLGDKKSRRWGRKKPGRWGQEAVAGETCGGGGKKP------ 245
G G+K+SR G KP +WGQ A A +T GGG K+P
Sbjct: 542 GSKSRQRQKAVAAGATSHGGGGNKQSRGGGGNKPRQWGQTAAAAKTRGGGDKQPGWQKAA 601
Query: 246 -----------------QKAAAPGAKSHKKPRRQWQK--AAAEKVAVAGAESCGGRG--- 283
QKAA GAKS KKP R+ QK AAAEK GA S G G
Sbjct: 602 AGVTKSRSGDGGKKAWRQKAAGTGAKSRKKPWRRGQKDAAAAEKAWATGATSRGSGGKQP 661
Query: 284 --QKAAAARAKSGGFGGKKQRRRGQRAP-----KSRGGRG 316
QK AAA ++S Q ++ P KSRG G
Sbjct: 662 RWQKPAAAGSESSAAAAVGQEAEARKKPRRRRAKSRGDGG 701
Score = 120 bits (301), Expect = 2e-27
Identities = 120/351 (34%), Positives = 152/351 (43%), Gaps = 127/351 (36%)
Query: 83 HRGRAQRRSMHAAAAQERSLG-RGCLGKEPPNRESWTRSDPRHCISQDASRSGSRVCRSR 141
+RG +++ AAAA +SLG RG + + + T S +Q ++ +GS+ +
Sbjct: 100 NRGGGEQK---AAAAGTKSLGGRGRKPRRRGQKAAATGSKKPRWRAQKSAAAGSKNRGAG 156
Query: 142 PQ-------TRGGGGKKPRRQKDAAAGAKSRGGKKPRR---------------------- 172
Q + GG+KP QK AAAGAKSR GKKPRR
Sbjct: 157 AQKAAAAAGVKSQGGEKP--QKAAAAGAKSRSGKKPRRRGAKSRGDEDKKGRQREAKSRF 214
Query: 173 -----GRKPRRRGQKSTAAGAKSRGEGGKKPRQQK----PAAAGAKS------GLGDKKS 217
GR+ + R K A GAKSR GGKKP++Q+ AA G KS G GDKK
Sbjct: 215 GKTRGGRRKKHRRPKPAAGGAKSRRGGGKKPQKQRRRGQKAATGGKSRVGKSRGGGDKKL 274
Query: 218 R-----------------------------------------RWGR--KKPGRWGQE--- 231
R RWGR KKP R GQ+
Sbjct: 275 RRQGQNAALAGAKRRGAATAGEKPAAKGRGGRGPKSLGGQNPRWGRGGKKPRRRGQKATK 334
Query: 232 -AVAGETCGGGGKKPQKAAAPGAKSHKKPRRQWQKAAAEKVAVAGAESCGG--------- 281
A AG GGGG+ QKAA G KS KK RR+ +K +K + AGA+S GG
Sbjct: 335 AAAAGTKRGGGGQ--QKAAVVGVKSRKKQRRRGKKPRRQKASAAGAKSRGGGDKKGLREA 392
Query: 282 -----------------RGQKAAAARAKSGGFGGKKQRRRGQRAPKSRGGR 315
R QKA AA+ + G G KK RRRG +A KSRGG+
Sbjct: 393 KRRGDGRKKPRWQNPRRRAQKAPAAKPRGG--GSKKPRRRGPKAAKSRGGK 441
Score = 102 bits (253), Expect = 6e-22
Identities = 103/320 (32%), Positives = 134/320 (41%), Gaps = 91/320 (28%)
Query: 82 SHRGR-AQRRSMHAAAAQERSLGRGCL--GKEPPNRESWTRSDPRHCISQDASRSGSRVC 138
SH G+ RR A AA E++ G G++ P R+ + + + SR +
Sbjct: 493 SHSGKNLWRRGQKAEAAGEKATAAGAKSRGRKQPRRQKPAVAGAKSRVGGSKSRQRQKAV 552
Query: 139 RS---------RPQTRGGGGKKPRRQKDAAAGAKSRGG--------------KKPRRG-- 173
+ Q+RGGGG KPR+ AA AK+RGG K R G
Sbjct: 553 AAGATSHGGGGNKQSRGGGGNKPRQWGQTAAAAKTRGGGDKQPGWQKAAAGVTKSRSGDG 612
Query: 174 -----------------RKPRRRGQKSTAA-------GAKSRGEGGKKPRQQKPAAAGAK 209
+KP RRGQK AA GA SRG GGK+PR QKPAAAG++
Sbjct: 613 GKKAWRQKAAGTGAKSRKKPWRRGQKDAAAAEKAWATGATSRGSGGKQPRWQKPAAAGSE 672
Query: 210 SGLGD---------KKSRRWGRKKPGRWGQEAVAG--------------ETCGGGGKKPQ 246
S KK RR K G GQ A G ++ GGGG K +
Sbjct: 673 SSAAAAVGQEAEARKKPRRRRAKSRGDGGQNAAVGINPWQRRGKKPRLGKSRGGGGAKSR 732
Query: 247 KAAAPGAKSHKK---PRRQWQKAAAEKVAVAGAESCGGRGQKAAAARAKSG----GFGGK 299
+ GAKS R +KAAA K G G + ++ A+++SG GG+
Sbjct: 733 GSG--GAKSRGSGGAKSRSGKKAAASKSHGGG----GAKRRRGGGAKSRSGEKAVTAGGQ 786
Query: 300 KQRRRGQRAP---KSRGGRG 316
K G + P KSRGGRG
Sbjct: 787 KAAAAGGKKPPRVKSRGGRG 806
Score = 99.8 bits (247), Expect = 3e-21
Identities = 114/341 (33%), Positives = 144/341 (42%), Gaps = 118/341 (34%)
Query: 75 ATALLPLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRSDPRHCISQDASRSG 134
A A P+ + ++ AAAA + LG G D + + + + +G
Sbjct: 25 ALARTPVELAAESAAPALSAAAAGVKILGSG---------------DKK--LRRQKAAAG 67
Query: 135 SRVCRSRPQTRGGGGKKPRRQKDAAA---GAKSRGGKKPR-----------RGRKPRRRG 180
+ R R Q GK+ R+ AA GA++RGG + + RGRKPRRRG
Sbjct: 68 GKKARLRGQKGAVAGKEARQHWQKAAGAGGAENRGGGEQKAAAAGTKSLGGRGRKPRRRG 127
Query: 181 ---------------QKSTAAGAKSRG--------------EGGKKPRQQKPAAAGAKSG 211
QKS AAG+K+RG +GG+KP QK AAAGAKS
Sbjct: 128 QKAAATGSKKPRWRAQKSAAAGSKNRGAGAQKAAAAAGVKSQGGEKP--QKAAAAGAKSR 185
Query: 212 LG--------------DKKSR-----------RWGRKKPGRWGQEAVAG-ETCGGGGKKP 245
G DKK R R GR+K R + A G ++ GGGKKP
Sbjct: 186 SGKKPRRRGAKSRGDEDKKGRQREAKSRFGKTRGGRRKKHRRPKPAAGGAKSRRGGGKKP 245
Query: 246 QK------AAAPGAKSH---------KKPRRQWQKAA-----AEKVAVAG----AESCGG 281
QK AA G KS KK RRQ Q AA A AG A+ GG
Sbjct: 246 QKQRRRGQKAATGGKSRVGKSRGGGDKKLRRQGQNAALAGAKRRGAATAGEKPAAKGRGG 305
Query: 282 RGQKAAAARAKSGGFGGKKQRRRGQRAPKS------RGGRG 316
RG K+ + G GGKK RRRGQ+A K+ RGG G
Sbjct: 306 RGPKSLGGQNPRWGRGGKKPRRRGQKATKAAAAGTKRGGGG 346
Score = 87.0 bits (214), Expect = 2e-17
Identities = 89/249 (35%), Positives = 106/249 (42%), Gaps = 85/249 (34%)
Query: 96 AAQERSLGRGCLGKEPPNRESWTRSDPRHCISQDASRSGSRVCRSRPQTRGGGGKKPRRQ 155
A ++++ G G ++ P W R ++ A +G+ +RG GGK+PR Q
Sbjct: 616 AWRQKAAGTGAKSRKKP----WRRGQKDAAAAEKAWATGAT-------SRGSGGKQPRWQ 664
Query: 156 KDAAAG-----------------------AKSRG----------------GKKPRRGRKP 176
K AAAG AKSRG GKKPR G+
Sbjct: 665 KPAAAGSESSAAAAVGQEAEARKKPRRRRAKSRGDGGQNAAVGINPWQRRGKKPRLGKSR 724
Query: 177 RRRGQKSTAAG-AKSRGEGGKKPRQQKPAAAGAKSGLGDKKSRRWGRKKPGRWGQEAVAG 235
G KS +G AKSRG GG K R K AAA G G K RR G K R G++AV
Sbjct: 725 GGGGAKSRGSGGAKSRGSGGAKSRSGKKAAASKSHGGGGAKRRRGGGAK-SRSGEKAV-- 781
Query: 236 ETCGGGGKKPQKAAAPGAKSHKKPRRQWQKAAAEKVAVAGAESCGGRGQKAAAARAKSGG 295
T GG QKAAA G K K PR +S GGRGQKAAA
Sbjct: 782 -TAGG-----QKAAAAGGK--KPPR---------------VKSRGGRGQKAAA------- 811
Query: 296 FGGKKQRRR 304
GGKK RR
Sbjct: 812 -GGKKPLRR 819
>gi|239754474 PREDICTED: similar to mucin [Homo sapiens]
Length = 417
Score = 49.7 bits (117), Expect = 3e-06
Identities = 60/245 (24%), Positives = 97/245 (39%), Gaps = 37/245 (15%)
Query: 77 ALLPLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRSDPRHCISQDASRSGS- 135
A P + + RAQ R AAAA P S R++ R + +G
Sbjct: 72 AAAPAADQQRAQDREEEAAAA-------------PVPTSSGHRTEKRKRLQLQCQPAGGT 118
Query: 136 ---RVCRSRPQTRGGGGKKPRRQKDAAAGAKSRGGKKPRRGRK-PRRR-----GQKSTAA 186
R RS P + + AA SRG + +R R+ P+RR GQ+ +
Sbjct: 119 GQRRGSRSSPSADQQRAQDREEEAAAAPVPTSRGHRTEKRKRQQPQRRPAGGTGQRRGSG 178
Query: 187 GAKSRGEGGKKPRQQKPAAAGAKSGLGDKKSRRWGRKKPGRWGQEAVAGETCGGGGKKPQ 246
+ S + G + R+++ AAA A + G + +R ++ R GG G++
Sbjct: 179 SSPSADQQGAQDREEEAAAAPAPTSRGHRTEKRKPQQPQCR---------PAGGTGQRRG 229
Query: 247 KAAAPGAKSHKKPRRQWQKAAAEKVAVAGAESCGGRGQKAAAARAKSGGFGGKKQRRRGQ 306
++P A + R+ + AAA S G R +K + + GG QRR
Sbjct: 230 SRSSPSADQQRAQDREEEAAAA-----PAPTSRGHRTEKRKPQQPQRRPAGGTGQRRGSG 284
Query: 307 RAPKS 311
+P +
Sbjct: 285 YSPSA 289
Score = 42.0 bits (97), Expect = 7e-04
Identities = 50/191 (26%), Positives = 86/191 (45%), Gaps = 22/191 (11%)
Query: 132 RSGSRVCRSRPQTRGGGGKKPRRQKDAAAGAKSRGGKKP--RRGRKPRRR-----GQKST 184
R GSR S Q R + R ++ AAA A + G + R+ ++P+RR GQ+
Sbjct: 227 RRGSRSSPSADQQRA----QDREEEAAAAPAPTSRGHRTEKRKPQQPQRRPAGGTGQRRG 282
Query: 185 AAGAKSRGEGGKKPRQQKPAAAGAKSGLG---DKKSRRWGRKKP-GRWGQEAVAGETCG- 239
+ + S + G + R+++ AAA A + G +K+ R + +P G GQ +G +
Sbjct: 283 SGYSPSADQQGAQDREEEAAAAPAPTSSGHRTEKRKRLQLQCQPAGGTGQRRGSGCSSSA 342
Query: 240 ---GGGKKPQKAAA---PGAKSHKKPRRQWQKAAAEKVAVAGAESCGGRGQKAAAARAKS 293
G + ++AAA P + H+ +R+ Q+ A G G A RA+
Sbjct: 343 NQQGAQDREEEAAAAPVPTSSGHRTEKRKPQQPQRRPAAGTGQRRGSGSSPSADQQRAQD 402
Query: 294 GGFGGKKQRRR 304
+K ++R
Sbjct: 403 REEEVRKWKKR 413
Score = 31.2 bits (69), Expect = 1.3
Identities = 32/142 (22%), Positives = 53/142 (37%), Gaps = 18/142 (12%)
Query: 175 KPRRRGQKSTAAGAKSRGEG-----GKKPRQQKPAAAGAKSGLGDKKSRRWGRKKPGRWG 229
KPR++ Q + + EG +K + +P G RR P
Sbjct: 2 KPRQKEQDTRLRKLRESSEGDQWLENEKTKPLRPQQQPQCQPAGGTGQRRGSGSSP---- 57
Query: 230 QEAVAGETCGGGGKKPQKAAAPGAKSHKKPRRQWQKAAAEKVAVAGAESCGGRGQKAAAA 289
+ + G ++ + AAAP A + R+ + AAA S G R +K
Sbjct: 58 ----SADQQGAQDREEEAAAAPAADQQRAQDREEEAAAAPVPT-----SSGHRTEKRKRL 108
Query: 290 RAKSGGFGGKKQRRRGQRAPKS 311
+ + GG QRR + +P +
Sbjct: 109 QLQCQPAGGTGQRRGSRSSPSA 130
Score = 29.6 bits (65), Expect = 3.7
Identities = 33/147 (22%), Positives = 60/147 (40%), Gaps = 23/147 (15%)
Query: 80 PLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRSDPRHCIS---QDASRSGSR 136
P + + AQ R AAAA P S R++ R + Q A +G R
Sbjct: 287 PSADQQGAQDREEEAAAA-------------PAPTSSGHRTEKRKRLQLQCQPAGGTGQR 333
Query: 137 VCRSRPQTRGGGGKKPRRQKDAAAGAKSRGGKKPRRGRKPRRRGQKSTAAGAKSRGEGGK 196
+ G + R ++ AAA + G + + RKP++ ++ A + RG G
Sbjct: 334 RGSGCSSSANQQGAQDREEEAAAAPVPTSSGHRTEK-RKPQQPQRRPAAGTGQRRGSG-- 390
Query: 197 KPRQQKPAAAGAKSGLGDKKSRRWGRK 223
P+A ++ +++ R+W ++
Sbjct: 391 ----SSPSADQQRAQDREEEVRKWKKR 413
Score = 28.5 bits (62), Expect = 8.2
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 8/123 (6%)
Query: 197 KPRQQKPAAAGAK---SGLGDKKSRRWGRKKPGRWGQEAVAGETCGGGGKKPQKAAAPGA 253
KPRQ++ K S GD+ + KP R Q+ + GG G++ ++P A
Sbjct: 2 KPRQKEQDTRLRKLRESSEGDQWLEN-EKTKPLRPQQQPQC-QPAGGTGQRRGSGSSPSA 59
Query: 254 KSHKKPRRQWQKAAAEKVAVAGAESCGGRGQKAAAARAKSGGFGGKKQRRRGQRAPKSRG 313
R+ + AAA A + R ++AAAA + ++R+R Q + G
Sbjct: 60 DQQGAQDREEEAAAAP---AADQQRAQDREEEAAAAPVPTSSGHRTEKRKRLQLQCQPAG 116
Query: 314 GRG 316
G G
Sbjct: 117 GTG 119
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 48.5 bits (114), Expect = 8e-06
Identities = 61/265 (23%), Positives = 93/265 (35%), Gaps = 30/265 (11%)
Query: 74 PATALLPLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRSDPRHCISQDASRS 133
PA A P + + + R A + S G P W R + S +
Sbjct: 507 PAAAAGPPTRKKSRRERKRSGEAKEAASSSSGTQPAPPAPASPWDSKKHRSRDRKPGSHA 566
Query: 134 GSRVCR-SRPQTRGGGGKKPRRQKDAAAGAKSRGGKKPRRGRKPRRRGQKSTAAG-AKSR 191
S R SR ++R ++ R D + RGG + R R+ RRR ++S + A S
Sbjct: 567 SSSARRRSRSRSRSRSTRRRSRSTD-----RRRGGSRRSRSREKRRRRRRSASPPPATSS 621
Query: 192 GEGGKKPRQQKPAAAGAKSGLGDKKSRRWGRKKPGRWGQEAVA------GETCGGGGKKP 245
++ R + G S K+SR G K+ G ++A A G T G
Sbjct: 622 SSSSRRERHRGKHRDGGGSKKKKKRSRSRGEKRSGDGSEKAPAPAPPPSGSTSCGDRDSR 681
Query: 246 QKAAAPGAKSHKKPRRQWQKAAAEKVAVAGAESCGGRGQKAAAARA-------------- 291
++ A P + + A + V + RG A A +
Sbjct: 682 RRGAVPPSIQDLTDHDLF--AIKRTITVGRLDKSDPRGPSPAPASSPKREVLYDSEGLSG 739
Query: 292 -KSGGFGGKKQRRRGQRAPKSRGGR 315
+ GG +K RRR A S R
Sbjct: 740 EERGGKSSQKDRRRSGAASSSSSSR 764
Score = 35.8 bits (81), Expect = 0.051
Identities = 41/167 (24%), Positives = 65/167 (38%), Gaps = 25/167 (14%)
Query: 158 AAAGAKSRGGKKPRRGRKPRRRGQKSTAAGAKSRGEGGKKPRQQKPAAAGAKSGLGDKKS 217
AAAG +R KK RR RK R G+ AA + S G +P PA+ D K
Sbjct: 509 AAAGPPTR--KKSRRERK--RSGEAKEAASSSS----GTQPAPPAPASPW------DSKK 554
Query: 218 RRWGRKKPG--------RWGQEAVAGETCGGGGKKPQKAAAPGAKSHKKPRRQWQKAAAE 269
R +KPG R + + + + +S + +R+ ++ +A
Sbjct: 555 HRSRDRKPGSHASSSARRRSRSRSRSRSTRRRSRSTDRRRGGSRRSRSREKRRRRRRSAS 614
Query: 270 KVAVAGAESCGGRGQKAAAARAKSGGFGGKKQRRRGQRAPKSRGGRG 316
+ S R + R G G KK+++R + + R G G
Sbjct: 615 PPPATSSSSSSRRERHRGKHR---DGGGSKKKKKRSRSRGEKRSGDG 658
Score = 35.8 bits (81), Expect = 0.051
Identities = 37/147 (25%), Positives = 57/147 (38%), Gaps = 11/147 (7%)
Query: 163 KSRGGKKPRRGRKPRRRGQKSTAAGAKSRGEGGKKPRQQKPAAAGAKSGLGDKKSRRWGR 222
+ RGGK ++ R RR G S+++ ++ +G ++K G + D+ R
Sbjct: 740 EERGGKSSQKDR--RRSGAASSSSSSREKGS------RRKALDGGDRDRDRDRDRDRDRS 791
Query: 223 KKPGRWGQEAVAGETCGGGGKKPQKAAAPGAKSHKKPRRQWQKAAAEKVAVAGAESCGGR 282
K R +E+ G KP ++ G+ S + KVAV E
Sbjct: 792 SKKARPPKESAPSS---GPPPKPPVSSGSGSSSSSSSCSSRKVKLQSKVAVLIREGVSST 848
Query: 283 GQKAAAARAKSGGFGGKKQRRRGQRAP 309
AA A G G K R R R+P
Sbjct: 849 TPAKDAASAGLGSIGVKFSRDRESRSP 875
Score = 35.0 bits (79), Expect = 0.087
Identities = 73/312 (23%), Positives = 110/312 (35%), Gaps = 67/312 (21%)
Query: 42 NGDADELLELPALLQLPAGCDPCASLRDSRVTPATALLPLSHRGRAQRRSMHAAAAQERS 101
+GD E + PA P+G C RDSR A +P S Q + H A +R+
Sbjct: 655 SGDGSE--KAPAPAPPPSGSTSCGD-RDSRRRGA---VPPS----IQDLTDHDLFAIKRT 704
Query: 102 LGRGCLGKEPPNRESWT-RSDPRHCISQDA------------------------SRSGSR 136
+ G L K P S S P+ + D+ S S SR
Sbjct: 705 ITVGRLDKSDPRGPSPAPASSPKREVLYDSEGLSGEERGGKSSQKDRRRSGAASSSSSSR 764
Query: 137 VCRSRPQTRGGGGKKPRRQKDAAAGAKSRGGKKPRR-----GRKPRR-----RGQKSTAA 186
SR + GG + R +D S+ + P+ G P+ G S+++
Sbjct: 765 EKGSRRKALDGGDRDRDRDRDRDRDRSSKKARPPKESAPSSGPPPKPPVSSGSGSSSSSS 824
Query: 187 GAKSRG------------EGGKKPRQQKPAAAGAKSGLGDKKSRRWGRKKPGRWGQEAVA 234
SR EG K AA+ +G K SR + P E
Sbjct: 825 SCSSRKVKLQSKVAVLIREGVSSTTPAKDAASAGLGSIGVKFSRDRESRSPFLKPDERAP 884
Query: 235 GETCGGGGKKPQKAAAPGAKSHKKPRRQWQKAAAEKVAVAGAESCGGRGQKAAAARAKSG 294
E AAPG+ KK + + KA A+K ++ + +K + SG
Sbjct: 885 TEMA---------KAAPGSTKPKKTKVK-AKAGAKKTKGTKGKTKPSKTRKKVRSGGGSG 934
Query: 295 GFGGKKQRRRGQ 306
G GG+ ++ +
Sbjct: 935 GSGGQVSLKKSK 946
Score = 34.3 bits (77), Expect = 0.15
Identities = 44/182 (24%), Positives = 68/182 (37%), Gaps = 24/182 (13%)
Query: 148 GGKKPRRQKDAAAGAKSRGGKKPRRGRKPRRRGQKSTAAGAKSRGEGGKK-----PRQQK 202
GG+ R A+A ++ +P R P G + A+S GEG + P
Sbjct: 413 GGRAARPTPAASATPTAQPLPQPPAPRAPE--GDDFLSLHAESDGEGALQVDLGEPAPAP 470
Query: 203 PAAAGAKSGLGDKKSRRWGRKKPGRWGQEAVAGETCGGGGKKPQKAAAPGAKSHKKPRRQ 262
PAA GL ++ R++ R + A P AAA G + KK RR+
Sbjct: 471 PAADSRWGGLDLRRKILTQRRERYRQRSPSPA--------PAPAPAAAAGPPTRKKSRRE 522
Query: 263 WQKAAAEKVAVAG---------AESCGGRGQKAAAARAKSGGFGGKKQRRRGQRAPKSRG 313
+++ K A + A + +K + K G RRR + +SR
Sbjct: 523 RKRSGEAKEAASSSSGTQPAPPAPASPWDSKKHRSRDRKPGSHASSSARRRSRSRSRSRS 582
Query: 314 GR 315
R
Sbjct: 583 TR 584
Score = 33.5 bits (75), Expect = 0.25
Identities = 65/275 (23%), Positives = 99/275 (36%), Gaps = 40/275 (14%)
Query: 34 GAQPAQAANGDADELLELPALLQLPAGCDPCASLRDSRVTPATALLPLSHRGRAQRRSMH 93
G PA A++ + L + L G +S +D R + A + S ++R+++
Sbjct: 717 GPSPAPASSPKREVLYDSEGLSGEERGGK--SSQKDRRRSGAASSSSSSREKGSRRKALD 774
Query: 94 AAAA-----QERSLGRGCLGKEPPNRESWTRSDPRH--CISQDASRSGSRVCRSRPQT-- 144
++R R PP + + P S S S S C SR
Sbjct: 775 GGDRDRDRDRDRDRDRSSKKARPPKESAPSSGPPPKPPVSSGSGSSSSSSSCSSRKVKLQ 834
Query: 145 -------RGGGGKKPRRQKDAAAGAKSRGGK--KPRRGRKPRRRGQKSTAAGAKSRGEGG 195
R G + A+AG S G K + R R P + + G
Sbjct: 835 SKVAVLIREGVSSTTPAKDAASAGLGSIGVKFSRDRESRSPFLKPDERAPTEMAKAAPGS 894
Query: 196 KKPRQQK-PAAAGAKSGLGDKKSRRWGRKKPGRWGQEAVAGE-TCGGGGKKPQKAAAPGA 253
KP++ K A AGAK G K G+ KP + ++ +G + G GG+ K
Sbjct: 895 TKPKKTKVKAKAGAKKTKGTK-----GKTKPSKTRKKVRSGGGSGGSGGQVSLK------ 943
Query: 254 KSHKKPRRQWQKAAAEKVAVAGAESCGGRGQKAAA 288
K +AA K GAE G++ AA
Sbjct: 944 ---KSKADSCSQAAGTK----GAEETSWSGEERAA 971
>gi|153070260 myristoylated alanine-rich protein kinase C substrate
[Homo sapiens]
Length = 332
Score = 48.1 bits (113), Expect = 1e-05
Identities = 78/291 (26%), Positives = 110/291 (37%), Gaps = 46/291 (15%)
Query: 19 SPYLLLGEVLGHSALG--AQPAQAANGDADELLELPALLQLPAGCDPCASLRDSRVTPAT 76
SP G+ GH + A PA A +G +EL G P A + PA
Sbjct: 27 SPSKANGQENGHVKVNGDASPAAAESGAKEELQA--------NGSAPAADKEE----PAA 74
Query: 77 ALLPLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNR-ESWTRSDPRHCISQDASRSGS 135
A + A++ AAAA E G + KE P E+ P + AS + S
Sbjct: 75 AGSGAASPSAAEKGEPAAAAAPEA--GASPVEKEAPAEGEAAEPGSPTAAEGEAASAASS 132
Query: 136 RVCRSRPQTRGGG-----GKKPRRQKDAAAGAKS--RGGKKPRRGRKPRRRGQKSTAAGA 188
S P+ G + P+++K + KS G ++ +K G ++ A A
Sbjct: 133 T---SSPKAEDGATPSPSNETPKKKKKRFSFKKSFKLSGFSFKKNKKEAGEGGEAEAPAA 189
Query: 189 KSRGEGGKKPRQQKPAAAGAKSGLGDKKSRRWGRKKPGRWGQEAVAGETCGGGG----KK 244
EGGK AAA A++G + + G+EA AGE GG K
Sbjct: 190 ----EGGKDEAAGGAAAAAAEAGAASGE-------QAAAPGEEAAAGEEGAAGGDPQEAK 238
Query: 245 PQKAAA----PGAKSHKKPRRQWQKAAAEKVAVAGAESCGGRGQKAAAARA 291
PQ+AA P A K + K +K AGA + AA A
Sbjct: 239 PQEAAVAPEKPPASDETKAAEEPSKVEEKKAEEAGASAAACEAPSAAGPGA 289
Score = 42.0 bits (97), Expect = 7e-04
Identities = 47/189 (24%), Positives = 67/189 (35%), Gaps = 16/189 (8%)
Query: 130 ASRSGSRVCRSRPQTRGGGGKKPRRQK--DAAAGAKSRGGKKPRRGRKPRRR-----GQK 182
A+ S + P G G P + + AA A G P P G
Sbjct: 60 ANGSAPAADKEEPAAAGSGAASPSAAEKGEPAAAAAPEAGASPVEKEAPAEGEAAEPGSP 119
Query: 183 STAAG-AKSRGEGGKKPRQQKPAAAGAKSGLGDKKSRRWGRKKPGRWGQEAVAG--ETCG 239
+ A G A S P+ + A + KK +R+ KK + + + G
Sbjct: 120 TAAEGEAASAASSTSSPKAEDGATPSPSNETPKKKKKRFSFKKSFKLSGFSFKKNKKEAG 179
Query: 240 GGGKKPQKAAAPGAKSHKKPRRQWQKAAAEKVAVAGAESCGGRGQKAAAARAKSGGFGGK 299
GG+ A AP A+ K AAA + A E G++AAA + G GG
Sbjct: 180 EGGE----AEAPAAEGGKDEAAGGAAAAAAEAGAASGEQAAAPGEEAAA--GEEGAAGGD 233
Query: 300 KQRRRGQRA 308
Q + Q A
Sbjct: 234 PQEAKPQEA 242
>gi|239743051 PREDICTED: hypothetical protein XP_002342747 [Homo
sapiens]
Length = 306
Score = 47.8 bits (112), Expect = 1e-05
Identities = 66/289 (22%), Positives = 107/289 (37%), Gaps = 41/289 (14%)
Query: 42 NGDADELLE----LPALLQLPAGCDPCASLRDSRVTPATALLPLSHRGRAQRRSMHAAAA 97
+ + D+ LE P Q C P R + ++ P + + AQ R AAAA
Sbjct: 18 SSEGDQWLENEKTKPLRPQQQPQCQPAGGTGQRRGSGSS---PSADQQGAQDREEEAAAA 74
Query: 98 QERSLGRGCLGKEPPNRESWTRSDPRHCISQDASRSGSRVCRSRPQTRGGGGKKPRRQKD 157
+ K P + R R GSR S Q G + R ++
Sbjct: 75 PAPTSRGHRTEKRKPQQPQ------RRPAGGTGQRRGSRSSSSADQQ----GAQDREEEA 124
Query: 158 AAAGAKSRGGKKPRRGRKPRRRGQKSTAAGAKSRGEGGK--------KPRQQKPAAAGAK 209
AAA A + G + + RKP++ + A + RG G + R+++ AA
Sbjct: 125 AAAPAPTSSGHRTEK-RKPQQPQCRPAAGTGQRRGSGCSPSADQQRAQDREEEATAAPVP 183
Query: 210 SGLGDKKSRRW---------GRKKPGRWGQEAVAGETCGGGGKKPQKAAAPGAKSHKKPR 260
+ G + +R G R + + + + GG G++ ++P A +
Sbjct: 184 TSSGHRTEKRKRLQLQCQPAGGTGQRRGSRSSPSRQPAGGTGQRRGSRSSPSADQQRAQD 243
Query: 261 RQWQKAAAEKVAVAGAESCGGRGQKAAAARAKSGGFGGKKQRRRGQRAP 309
R+ + A ++ GG GQ+ A A GG QRR AP
Sbjct: 244 REEEAAQPQR------RPAGGTGQRRGTAAAPVPTTGGTGQRRGTAAAP 286
Score = 46.2 bits (108), Expect = 4e-05
Identities = 46/203 (22%), Positives = 83/203 (40%), Gaps = 28/203 (13%)
Query: 128 QDASRSGSRVCRSRPQTRGGGGKKPRRQKDAAAGAKSRGGKKP--RRGRKPRRR-----G 180
Q A +G R + G + R ++ AAA A + G + R+ ++P+RR G
Sbjct: 42 QPAGGTGQRRGSGSSPSADQQGAQDREEEAAAAPAPTSRGHRTEKRKPQQPQRRPAGGTG 101
Query: 181 QKSTAAGAKSRGEGGKKPRQQKPAAAGAKSGLGDKKSRRWGRKKPGRWGQEAVAGETCGG 240
Q+ + + S + G + R+++ AAA A + G + +R ++ R G
Sbjct: 102 QRRGSRSSSSADQQGAQDREEEAAAAPAPTSSGHRTEKRKPQQPQCR---------PAAG 152
Query: 241 GGKKPQKAAAPGAKSHKKPRRQWQKAAAEKVAVAG------------AESCGGRGQKAAA 288
G++ +P A + R+ + AA +G + GG GQ+ +
Sbjct: 153 TGQRRGSGCSPSADQQRAQDREEEATAAPVPTSSGHRTEKRKRLQLQCQPAGGTGQRRGS 212
Query: 289 ARAKSGGFGGKKQRRRGQRAPKS 311
+ S G +RRG R+ S
Sbjct: 213 RSSPSRQPAGGTGQRRGSRSSPS 235
Score = 35.0 bits (79), Expect = 0.087
Identities = 53/255 (20%), Positives = 93/255 (36%), Gaps = 45/255 (17%)
Query: 59 AGCDPCAS---LRDSRVTPATALLPLSHRGRAQRRSMHAAAAQERSLG-----RGCLGKE 110
+G P A +D A A P S R ++R Q R G RG
Sbjct: 53 SGSSPSADQQGAQDREEEAAAAPAPTSRGHRTEKRKPQQP--QRRPAGGTGQRRGSRSSS 110
Query: 111 PPNRESWTRSDPRHCISQDASRSGSRVCRSRPQT-----------RGGGGKKP------- 152
+++ + + + SG R + +PQ R G G P
Sbjct: 111 SADQQGAQDREEEAAAAPAPTSSGHRTEKRKPQQPQCRPAAGTGQRRGSGCSPSADQQRA 170
Query: 153 --RRQKDAAAGAKSRGGKKPRR-----------GRKPRRRGQKSTAAGAKSRGEGGKKPR 199
R ++ AA + G + + G +RRG +S+ + + G G ++
Sbjct: 171 QDREEEATAAPVPTSSGHRTEKRKRLQLQCQPAGGTGQRRGSRSSPSRQPAGGTGQRRGS 230
Query: 200 QQKPAAAGAKSGLGDKKSRRWGRKKPGRWGQE----AVAGETCGGGGKKPQKAAAPGAKS 255
+ P+A ++ ++++ + R+ G GQ A T GG G++ AAAP S
Sbjct: 231 RSSPSADQQRAQDREEEAAQPQRRPAGGTGQRRGTAAAPVPTTGGTGQRRGTAAAPAPTS 290
Query: 256 HKKPRRQWQKAAAEK 270
+R+ + E+
Sbjct: 291 TGTGQRRGSEEMEEE 305
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 47.0 bits (110), Expect = 2e-05
Identities = 53/241 (21%), Positives = 91/241 (37%), Gaps = 19/241 (7%)
Query: 80 PLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRSDPRHCISQDASRSGSRVCR 139
P R R+ +R + + Q R R P R W+RS R+ + SRS R
Sbjct: 511 PQWRRSRSAQRWGRSRSPQRRGRSRS------PQRPGWSRS--RNTQRRGRSRSARR--- 559
Query: 140 SRPQTRGGGGKKPRRQKDAAAGAKSRG---GKKPRRGRKPRRRGQKSTAAG----AKSRG 192
R +R + R + A +SR ++ R R P RR +S ++SR
Sbjct: 560 GRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRT 619
Query: 193 EGGKKPRQQKPAAAGAKSGLGDKKSRRWGRKKPGRWGQEAVAGETCGGGGKKPQKAAAPG 252
++ R + P ++S ++S R + P R G+ G + A G
Sbjct: 620 PARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSG 679
Query: 253 AKSHKKP-RRQWQKAAAEKVAVAGAESCGGRGQKAAAARAKSGGFGGKKQRRRGQRAPKS 311
+ P RR ++ + + + S RG+ + + G G +R+ R +
Sbjct: 680 RSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNKSRTSQR 739
Query: 312 R 312
R
Sbjct: 740 R 740
Score = 46.2 bits (108), Expect = 4e-05
Identities = 62/267 (23%), Positives = 102/267 (38%), Gaps = 43/267 (16%)
Query: 73 TPATALLPLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRSDPRHCISQDASR 132
+PAT S + RS A+ RS R P R S +R+ R R
Sbjct: 566 SPATRGRSRSRTPARRGRSRSRTPARRRSRSR-----TPTRRRSRSRTPARR------GR 614
Query: 133 SGSRV-CRSRPQTRGGGGKKPRRQKDAAAGAKSRGGKKPRRGRK----PRRRGQKSTAAG 187
S SR R R +TR ++ R + A +SR RRGR P RRG+ +
Sbjct: 615 SRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTP 674
Query: 188 AKSRGEGGKKPRQQKPAAAGAKSGLGDKKSR-------RWGR---KKPGRWGQEAVAGE- 236
A+ G + R + PA G ++ R R GR + P R G+ + E
Sbjct: 675 ARRSG----RSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSHSRTPQRRGRSGSSSER 730
Query: 237 ------------TCGGGGKKPQKAAAPGAKSHKKPRRQWQKAAAEKVAVAGAESCGGRGQ 284
+ K + ++ ++S PR + + + + +++G+ C +
Sbjct: 731 KNKSRTSQRRSRSNSSPEMKKSRISSRRSRSLSSPRSKAKSRLSLRRSLSGSSPCPKQKS 790
Query: 285 KAAAARAKSGGFGGKKQRRRGQRAPKS 311
+ R++SG K + R R +S
Sbjct: 791 QTPPRRSRSGSSQPKAKSRTPPRRSRS 817
Score = 40.4 bits (93), Expect = 0.002
Identities = 62/287 (21%), Positives = 109/287 (37%), Gaps = 46/287 (16%)
Query: 37 PAQAANGDADELLELP-ALLQLPAGCDPCASLRDSRVTPATALLPLSHRGRAQRRSMHAA 95
P ++ +G + E+ + P A + +G D + PA LP RRS +
Sbjct: 1593 PRRSRSGSSPEVKDKPRAAPRAQSGSDSSPEPK----APAPRALP--------RRSRSGS 1640
Query: 96 AAQERSLGRGCLGKEPPNRESWTRSDPRHCISQDASRSGSRVCRSRPQTRGGGGKKPRRQ 155
+++ GRG P S T S P H SR+ R RS P+ + PRR+
Sbjct: 1641 SSK----GRG----PSPEGSSSTESSPEH---PPKSRTARRGSRSSPEPKTKSRTPPRRR 1689
Query: 156 KDAAAGAKSRGGKKPRRGRKPRRRGQKSTAAGAKSRGEGGKKPRQQKPAAAGAKSGLGDK 215
++ +R + RR R S ++ ++R + R + P+ + + +
Sbjct: 1690 SSRSSPELTRKARLSRRSR--------SASSSPETRSRTPPRHR-RSPSVSSPEPAEKSR 1740
Query: 216 KSRRWGRKKPGRWGQEAVAGETCGGGGKKPQKAAAPGAKSHKKPRRQWQKAAAEKVAVAG 275
SRR R + +T G+ P +S + RR+ + +
Sbjct: 1741 SSRR-------RRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTTRRRDRSGS 1793
Query: 276 AESCGGRGQKAAA----ARAKSGGFG--GKKQRRRGQRAPKSRGGRG 316
++S R Q++ + R + GG G + R+ SR RG
Sbjct: 1794 SQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRG 1840
Score = 36.2 bits (82), Expect = 0.039
Identities = 41/191 (21%), Positives = 75/191 (39%), Gaps = 11/191 (5%)
Query: 131 SRSGSRVCRSR-----PQTRGGGGKKPRRQKDAAAGAKSRGGKKPRRGRKPRRRGQKSTA 185
+RS R R + P R G + P K + +++ + R R P+ R +S
Sbjct: 461 NRSHGRAKRDKSHSHTPSRRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQ 520
Query: 186 AGAKSRGEGGKKPRQQKPAAAGAKSGLGDKKSRRWGRKKPGRWGQEAVAGETCGGGGKKP 245
+SR ++ R + P G + ++R GR + R G+ G +
Sbjct: 521 RWGRSRSPQ-RRGRSRSPQRPGWSRS---RNTQRRGRSRSARRGRSHSRSPATRGRSRSR 576
Query: 246 QKAAAPGAKSHKKPRRQWQ-KAAAEKVAVAGAESCGGRGQKAAAARAKSGGFGGKKQRRR 304
A ++S RR+ + + + + + + GR + AR +S ++R R
Sbjct: 577 TPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSR 636
Query: 305 GQRAPKSRGGR 315
R+P R GR
Sbjct: 637 -SRSPARRSGR 646
Score = 36.2 bits (82), Expect = 0.039
Identities = 53/227 (23%), Positives = 88/227 (38%), Gaps = 35/227 (15%)
Query: 109 KEPPNRESWTRSDPRHCISQDASRSGSRVCRSRPQTRGGGGKKPRRQKDAAA---GAKSR 165
+ PP R S +RS P SR SR S P+TR + RR ++ KSR
Sbjct: 1683 RTPPRRRS-SRSSPELTRKARLSRR-SRSASSSPETRSRTPPRHRRSPSVSSPEPAEKSR 1740
Query: 166 GGKK------------PRRGRKPRRRGQKSTAAGAKSRGEGGKKPRQQKPAAAGAKSGLG 213
++ RRGR P + + + ++SR E + R++ +SG
Sbjct: 1741 SSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTTRRRD------RSGSS 1794
Query: 214 DKKSRRWGRKKPGRWGQEAVAGETCGGGG---KKPQKAAAPGAKSHKKPRRQ-----WQK 265
SRR R + + V GG G + P + + S ++ R +K
Sbjct: 1795 QSTSRRRQRSR----SRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRSRTPPTSRK 1850
Query: 266 AAAEKVAVAGAESCGGRGQKAAAARAKSGGFGGKKQRRRGQRAPKSR 312
+ + + A + R A R++S ++R R + +P SR
Sbjct: 1851 RSRSRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSRTSPVSR 1897
Score = 33.1 bits (74), Expect = 0.33
Identities = 30/144 (20%), Positives = 56/144 (38%), Gaps = 6/144 (4%)
Query: 71 RVTPATALLPLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPP------NRESWTRSDPRH 124
R +P+ + + + R+ RR A++ + ++ R P +R R R
Sbjct: 1725 RRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRT 1784
Query: 125 CISQDASRSGSRVCRSRPQTRGGGGKKPRRQKDAAAGAKSRGGKKPRRGRKPRRRGQKST 184
+D S S R R ++R RR+ + ++S ++ R RRRG+ T
Sbjct: 1785 TRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRSRT 1844
Query: 185 AAGAKSRGEGGKKPRQQKPAAAGA 208
++ R P K + + A
Sbjct: 1845 PPTSRKRSRSRTSPAPWKRSRSRA 1868
Score = 30.8 bits (68), Expect = 1.6
Identities = 27/106 (25%), Positives = 40/106 (37%), Gaps = 14/106 (13%)
Query: 86 RAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRSDPRHCISQDASRSGSRVCRSRPQTR 145
R QR + + R G G + P +ES SR+ SR R R +T
Sbjct: 1800 RRQRSRSRSRVTRRRRGGSGYHSRSPARQES--------------SRTSSRRRRGRSRTP 1845
Query: 146 GGGGKKPRRQKDAAAGAKSRGGKKPRRGRKPRRRGQKSTAAGAKSR 191
K+ R + A +SR P R+ R R + ++SR
Sbjct: 1846 PTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSR 1891
Score = 30.4 bits (67), Expect = 2.1
Identities = 41/185 (22%), Positives = 65/185 (35%), Gaps = 15/185 (8%)
Query: 142 PQTRGGGGKKPRRQKDAAA---GAKSRGGK------KPRRGRKPRRRGQKSTAAGAKSRG 192
PQ G + QK A G +SR G KP + R S + AK+R
Sbjct: 1512 PQRERSGSESSVDQKTVARTPLGQRSRSGSSQELDVKPSASPQERSESDSSPDSKAKTRT 1571
Query: 193 EGGKKPRQQKPAAAGAKSGLGDKKSRRWGRKKPGRWGQEAVAGETCGGGGKKPQ-KAAAP 251
++ R +KS L ++SR P + A G P+ KA AP
Sbjct: 1572 PLRQRSRSGSSPEVDSKSRLSPRRSR--SGSSPEVKDKPRAAPRAQSGSDSSPEPKAPAP 1629
Query: 252 GAKSHKKPRRQWQKAAAEKVAVAGAESCGGRGQKAAAAR-AKSGGFGGKKQRRRGQRAPK 310
A + R + + G+ S + +R A+ G + + + + P+
Sbjct: 1630 RALPRRS--RSGSSSKGRGPSPEGSSSTESSPEHPPKSRTARRGSRSSPEPKTKSRTPPR 1687
Query: 311 SRGGR 315
R R
Sbjct: 1688 RRSSR 1692
Score = 30.0 bits (66), Expect = 2.8
Identities = 48/252 (19%), Positives = 90/252 (35%), Gaps = 29/252 (11%)
Query: 82 SHRGRAQRRSMHAAAAQER-----SLGRGCLGKEPPNRESWTRSDPRHCISQDASRSGSR 136
SH QRR ++++ + S R P ++S S +S S++ SR
Sbjct: 713 SHSRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKKSRISSRRSRSLSSPRSKAKSR 772
Query: 137 VCRSR------PQTRGGGGKKPRRQKDAAAGAKSRGGKKPRRGRK-----PRRRG----- 180
+ R P + PRR + ++ K++ PRR R P+++
Sbjct: 773 LSLRRSLSGSSPCPKQKSQTPPRRSRSGSSQPKAKSRTPPRRSRSSSSPPPKQKSKTPSR 832
Query: 181 QKSTAAGAKSRGEGGKKPRQQKPAAAGAKSGLGDKKSRRWGRKKPG-RWGQEAVAGETCG 239
Q +++ + + G PRQ + A + R P + +C
Sbjct: 833 QSHSSSSPHPKVKSGTPPRQGSITSPQANEQSVTPQRRSCFESSPDPELKSRTPSRHSCS 892
Query: 240 GGGKKPQKAAAPGAKSHKKPRRQWQKAAAEKVAVAGAESCGGRGQKAAAARAKSGGFGGK 299
G ++ P KS PR+ ++++ + V S R +++ + S
Sbjct: 893 G-------SSPPRVKSSTPPRQSPSRSSSPQPKVKAIISPRQRSHSGSSSPSPSRVTSRT 945
Query: 300 KQRRRGQRAPKS 311
RR +P S
Sbjct: 946 TPRRSRSVSPCS 957
>gi|5174449 H1 histone family, member X [Homo sapiens]
Length = 213
Score = 46.6 bits (109), Expect = 3e-05
Identities = 36/117 (30%), Positives = 41/117 (35%), Gaps = 13/117 (11%)
Query: 146 GGGGKKPRRQKDAAAGAKSRGGKKPRRGRKPRRRGQKSTAAGAKSRGEGGKKP-RQQKPA 204
G G +K G + RG P K A GA KKP R QKP
Sbjct: 109 GANGSFKLNRKKLEGGGERRGAPAAATAPAPTAHKAKKAAPGAAGSRRADKKPARGQKPE 168
Query: 205 AAGAKSGLGDKKSRRWGRKKPGRWGQEAVAGETCGGGGKKPQKAAAPGAKSHKKPRR 261
K G G KK + KK T GGKK +KAA P K R+
Sbjct: 169 QRSHKKGAGAKKDKGGKAKK------------TAAAGGKKVKKAAKPSVPKVPKGRK 213
Score = 35.4 bits (80), Expect = 0.067
Identities = 54/207 (26%), Positives = 80/207 (38%), Gaps = 45/207 (21%)
Query: 144 TRGGGGKKPRRQKDAAAGAKSRGGKKPRRGRKP-----------RRRGQKSTAAGAKSRG 192
T G KK + +AA + S+ K ++ +P RR G+++ ++ AK
Sbjct: 13 TAEGMAKKVTKAGGSAALSPSKKRKNSKKKNQPGKYSQLVVETIRRLGERNGSSLAKIYT 72
Query: 193 EGGKKPR-QQKPAAAGAK---------------SGLGDKKSRRWGRKKPGRWGQE--AVA 234
E K P Q+ K G G S + RKK G+ A A
Sbjct: 73 EAKKVPWFDQQNGRTYLKYSIKALVQNDTLLQVKGTGANGSFKLNRKKLEGGGERRGAPA 132
Query: 235 GETCGGGGKKPQKAAAPGA----KSHKKPRR-QWQKAAAEKVAVAGAESCGGRGQKAAAA 289
T K AAPGA ++ KKP R Q + + K + GG+ +K AAA
Sbjct: 133 AATAPAPTAHKAKKAAPGAAGSRRADKKPARGQKPEQRSHKKGAGAKKDKGGKAKKTAAA 192
Query: 290 RAKSGGFGGKKQRRRGQ----RAPKSR 312
GGKK ++ + + PK R
Sbjct: 193 -------GGKKVKKAAKPSVPKVPKGR 212
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 46.6 bits (109), Expect = 3e-05
Identities = 55/231 (23%), Positives = 92/231 (39%), Gaps = 8/231 (3%)
Query: 86 RAQRRSMHAAAAQERSLGRGC-LGKEPPNRESWTRSDPRHCISQDASRSGSRVCRSRPQT 144
+ +++ H + ++R L C G P R+ +S +H +D S SGSR R R ++
Sbjct: 171 KKKKKGGHRRSRKKRRLESECSCGSSSPLRKK-KKSVKKH--RRDRSDSGSRRKR-RHRS 226
Query: 145 RGGGGKKPRRQKDAAAGAKSRGGKKPRRGRKPRRRGQKSTAAGAKSRGEGGKKPRQQKPA 204
R K+ + K+ G++ R ++ + SR P+ +
Sbjct: 227 RSSKCKRKEKNKEKKRPHTESPGRRSHRHSSGSSHSPSLSSHYSDSRSPSRLSPKHRDEG 286
Query: 205 A-AGAKSGLGDKKSRRWGRKKPGRWGQEAVAGETCGGGGKKPQKAAAPGAK-SHKKPR-R 261
G++ G + G G + +G+ G G +P A +P K S PR R
Sbjct: 287 RKTGSQRSSGSRSPSPSGGSGWGSPQRNGGSGQRSGAHGGRPGSAHSPPDKPSSPSPRVR 346
Query: 262 QWQKAAAEKVAVAGAESCGGRGQKAAAARAKSGGFGGKKQRRRGQRAPKSR 312
AAA G ES R ++ R G ++RRR +R +SR
Sbjct: 347 DKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSR 397
Score = 37.7 bits (86), Expect = 0.013
Identities = 41/198 (20%), Positives = 67/198 (33%), Gaps = 7/198 (3%)
Query: 105 GCLGKEPPNRESWTRSDPRHCISQDASRSGSRVCRSRPQTRGGGGKKPRRQKDAAAGAKS 164
G P W Q + G R + PR + AAA A +
Sbjct: 296 GSRSPSPSGGSGWGSPQRNGGSGQRSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAAAAPT 355
Query: 165 ---RGGKKPRRGRKPRRRGQKSTAAGAKSRGEGGKKPRQQKPAAAGAKSGLGDKKSR--- 218
RG + P P +G+ AAG R ++ R++ ++A A G ++ R
Sbjct: 356 PPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSASAPRRRGRRRPRPAP 415
Query: 219 -RWGRKKPGRWGQEAVAGETCGGGGKKPQKAAAPGAKSHKKPRRQWQKAAAEKVAVAGAE 277
R + R + +G G G P+ + G H K ++ A
Sbjct: 416 PRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGGHGKRAKERPPRARPASTSPSPG 475
Query: 278 SCGGRGQKAAAARAKSGG 295
+ G RG + ++S G
Sbjct: 476 AHGRRGGPEGKSSSRSPG 493
Score = 32.0 bits (71), Expect = 0.74
Identities = 37/147 (25%), Positives = 51/147 (34%), Gaps = 14/147 (9%)
Query: 84 RGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRSDPRHCISQDASRSGSRVCRSRPQ 143
R R +RR ++A+ R GR PP S + S R + R
Sbjct: 388 RRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGS 447
Query: 144 TRGGGGK------KPRRQKDAAA----GAKSR----GGKKPRRGRKPRRRGQKSTAAGAK 189
RG GG +P R + A+ GA R GK R P R S+ + +K
Sbjct: 448 ERGHGGHGKRAKERPPRARPASTSPSPGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSK 507
Query: 190 SRGEGGKKPRQQKPAAAGAKSGLGDKK 216
SR +K + K L K
Sbjct: 508 SRSRSAEKRPHSPSRSPSPKKPLSRDK 534
Score = 32.0 bits (71), Expect = 0.74
Identities = 53/225 (23%), Positives = 80/225 (35%), Gaps = 52/225 (23%)
Query: 84 RGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRSDPRHCISQDASRSGSRVCRSRPQ 143
R R +RRS +A+A P R R PR + +SRS SR S
Sbjct: 389 RRRRRRRSRSSASA--------------PRRRGRRR--PRPAPPRGSSRSLSRARSSSDS 432
Query: 144 TRGGGGKKPRRQKDAAAGAKSRGGKKPRRGRKPRRRGQKSTAAGAKSRGEGGKKPRQQKP 203
G G P + + G GG R +P R ST+ P
Sbjct: 433 GSGRGAPGPGPEPGSERG---HGGHGKRAKERPPRARPASTS---------------PSP 474
Query: 204 AAAGAKSGLGDKKSRRWGRKKPGRWGQEAVAGETCGGGGKKPQKAAAPGAKSHKKPRRQW 263
A G + G K S R P W + P K+ + A+ K+P
Sbjct: 475 GAHGRRGGPEGKSSSRSPGPHPRSW-----------SSSRSPSKSRSRSAE--KRPHSP- 520
Query: 264 QKAAAEKVAVAGAESCGGRGQ----KAAAARAKSGGFGGKKQRRR 304
++ + K ++ + GR + +A AR +S + ++RRR
Sbjct: 521 SRSPSPKKPLSRDKDGEGRARHSEAEATRARRRSRSYSPIRKRRR 565
>gi|122937273 hypothetical protein LOC131149 [Homo sapiens]
Length = 477
Score = 45.8 bits (107), Expect = 5e-05
Identities = 39/140 (27%), Positives = 55/140 (39%), Gaps = 8/140 (5%)
Query: 179 RGQKSTAAGAKSRGEGGKKPRQQKPAAAGAKSGLGDKKSRRWGRKKPGRWGQEAVAGETC 238
RG K RG+ G KP A G GDK + G K GQ+ G+TC
Sbjct: 145 RGYKGEKGLKGERGDQGVPGYPGKPGAQGEPGPKGDKGNIGLGGVK----GQKGSKGDTC 200
Query: 239 GG--GGKKPQKAAAPGAKSHKKPRRQWQKA-AAEKVAVAGAESCGGRGQKAAAARAKSGG 295
G G+K + A H P + +K EK + CG G++ + GG
Sbjct: 201 GNCTKGEKGDQGAMGSPGLHGGPGAKGEKGEMGEKGEMGDKGCCGDSGERGGKGQKGEGG 260
Query: 296 FGGKKQRRRGQRAPKSRGGR 315
G+K +G + + GR
Sbjct: 261 MKGEK-GSKGDSGMEGKSGR 279
Score = 30.8 bits (68), Expect = 1.6
Identities = 45/193 (23%), Positives = 66/193 (34%), Gaps = 30/193 (15%)
Query: 146 GGGGKKPRRQKDAAAGAKSRGGKKPRRGRKPRRRGQKSTAAGAKSRGEGGKKPRQQK--- 202
G GK + + G K G +G+K G K G ++GE G +
Sbjct: 164 GYPGKPGAQGEPGPKGDKGNIGLGGVKGQK----GSKGDTCGNCTKGEKGDQGAMGSPGL 219
Query: 203 ---PAAAGAKSGLGDK-----------KSRRWGRKKPGRWGQEAVAGETCGGGGK-KPQK 247
P A G K +G+K R G+ + G G + G G + K +
Sbjct: 220 HGGPGAKGEKGEMGEKGEMGDKGCCGDSGERGGKGQKGEGGMKGEKGSKGDSGMEGKSGR 279
Query: 248 AAAPGAKSHKKPRRQWQKAAAEKVAVAGAE----SCGGRGQKAAAARAKSGGFGGKKQRR 303
PGAK P + +K + G G +G + + S GF G K
Sbjct: 280 NGLPGAKG--DPGIKGEKGELGPPGLLGPTGPKGDIGNKGVRGPTGKKGSRGFKGSKGEL 337
Query: 304 RGQRAPKSRGGRG 316
R P+S G
Sbjct: 338 --ARVPRSAFSAG 348
>gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens]
Length = 352
Score = 45.1 bits (105), Expect = 8e-05
Identities = 50/241 (20%), Positives = 96/241 (39%), Gaps = 37/241 (15%)
Query: 84 RGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRSDPRHCISQDASRSGSRVCRSRPQ 143
R A+R ++ AA + RGC + P + A +R +
Sbjct: 29 RACAERAALEVGAASADTGVRGCGARGPAP------------LLASAGGGRARDGTWGVR 76
Query: 144 TRGGGGKKPRRQKDAAAGAKSRGGKKPRRGRKP----RRRGQKSTAAGAKSRGEGGKKPR 199
T+G G P R SR +P P + RG S G ++RG
Sbjct: 77 TKGSGAALPSRPA-------SRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGS 129
Query: 200 QQKPAAAGAKSGLGDKKSRRWGRKKPGRWGQEAVAGETCGGGGKKPQKAA-APGA--KSH 256
+++ + G G +K ++ RK R C + +KA+ APGA +S
Sbjct: 130 RKRSRSRSRSRGRGSEKRKKKSRKDTSR---------NCSASTSQGRKASTAPGAEERSK 180
Query: 257 KKPRRQWQKAAAEKVAVAGAESCGGRGQKAAAA--RAKSGGFGGKKQRRRGQRAPKSRGG 314
+K RR+ + +++ + + + S ++++ R K G + K+++++ +R + G
Sbjct: 181 QKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKG 240
Query: 315 R 315
+
Sbjct: 241 K 241
Score = 28.9 bits (63), Expect = 6.2
Identities = 35/145 (24%), Positives = 57/145 (39%), Gaps = 30/145 (20%)
Query: 85 GRAQRRSMHAAA-----AQERSLGRGCLGKEPPNRESWTRSDPRHCISQDASRSGSRVCR 139
GRA+ H + ++ RS GRG ++ +R+ +R+ C AS S R
Sbjct: 118 GRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRN----C---SASTSQGRKAS 170
Query: 140 SRPQTRGGGGKKPRRQ-----------------KDAAAGAKSRGGKKPRRGRKPRRRGQK 182
+ P +K RR+ +++ + S G+K R K +RR +K
Sbjct: 171 TAPGAEERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKK 230
Query: 183 STAAGAKSRGEGGKKPRQQKPAAAG 207
K +G+ K QQ A G
Sbjct: 231 KKRKKLKKKGK-EKAEAQQVEALPG 254
>gi|156616290 collagen type VI alpha 6 [Homo sapiens]
Length = 2263
Score = 44.7 bits (104), Expect = 1e-04
Identities = 52/197 (26%), Positives = 71/197 (36%), Gaps = 21/197 (10%)
Query: 134 GSRVCRSRPQTRGGGGKKPRRQKDAAAGAKSR----GGKKPRRGRKPRRR--------GQ 181
GS+ + T G G K R A G S G K RGR+ RR G
Sbjct: 1488 GSQGSPGKRGTPGDRGAKGLRGDPGAPGVDSSIEGPTGLKGERGRQGRRGWPGPPGTPGS 1547
Query: 182 KSTAAGAKSRGEGGKKPRQQKPAAAGAKSGLGDKKSRRWGRKKPGRWGQEAVAGETCGGG 241
+ A RG G + P G + LG K + G G+ V GE G G
Sbjct: 1548 RRKTAAHGRRGHTGPQGTAGIPGPDGLEGSLGLKGPQ-------GPRGEAGVKGEKGGVG 1600
Query: 242 GKKPQKAAAPGAKSHKKPRRQWQKAAAEKVAVAGAESCGGRGQKAAAARAKSGGFG--GK 299
K PQ PG ++ + R Q E + + G G + S G+G G+
Sbjct: 1601 SKGPQGPPGPGGEAGNQGRLGSQGNKGEPGDLGEKGAVGFPGPRGLQGNDGSPGYGSVGR 1660
Query: 300 KQRRRGQRAPKSRGGRG 316
K + + P G +G
Sbjct: 1661 KGAKGQEGFPGESGPKG 1677
>gi|24475863 H1 histone family, member O, oocyte-specific [Homo
sapiens]
Length = 346
Score = 44.3 bits (103), Expect = 1e-04
Identities = 47/196 (23%), Positives = 79/196 (40%), Gaps = 16/196 (8%)
Query: 73 TPATALLPLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRSDPRHCISQDASR 132
T + L+P H+ + Q R M A A R+ G + P + S + DP + +
Sbjct: 122 TGSFKLVP-KHKKKIQPRKMAPATAPRRA---GEAKGKGPKKPSEAKEDPPNVGKVKKAA 177
Query: 133 SGSRVCRSRPQTRGGGGKKPRRQKDAAAGAKSRGGKKPRRGRKPRRRGQKSTAAGAKSRG 192
+ P G +K R+Q AA +++ G+ + KP + + ++AG SR
Sbjct: 178 KRPAKVQKPPPKPGAATEKARKQGGAAKDTRAQSGEARKVPPKPDKAMRAPSSAGGLSR- 236
Query: 193 EGGKKPRQQKPAAAGAKSGLGDKKSRRWGRKKPGRWGQEAVAGETCGGGGKKPQKAAAPG 252
K A G++S GD ++ R + K + A + G +K
Sbjct: 237 ---------KAKAKGSRSSQGDAEAYR--KTKAESKSSKPTASKVKNGAASPTKKKVVAK 285
Query: 253 AKSHKKPRRQWQKAAA 268
AK+ K + KAAA
Sbjct: 286 AKAPKAGQGPNTKAAA 301
Score = 28.9 bits (63), Expect = 6.2
Identities = 35/131 (26%), Positives = 45/131 (34%), Gaps = 22/131 (16%)
Query: 197 KPRQQKPAAAGAKSGLGDKKSRRWGRKKPGRWGQEAVAGETCGGGGKKP----------- 245
+P K A L K ++ +K AGE G G KKP
Sbjct: 112 RPLNSKARGATGSFKLVPKHKKKIQPRKMAPATAPRRAGEAKGKGPKKPSEAKEDPPNVG 171
Query: 246 --QKAAAPGAKSHKKPRRQWQKAAAEKVAVAGAESCGGRGQKAAAARAKSGGFGGKKQRR 303
+KAA AK K P + AA EK G + R Q A + +
Sbjct: 172 KVKKAAKRPAKVQKPPPK--PGAATEKARKQGGAAKDTRAQSGEARKV-------PPKPD 222
Query: 304 RGQRAPKSRGG 314
+ RAP S GG
Sbjct: 223 KAMRAPSSAGG 233
>gi|183583553 collagen, type XXIX, alpha 1 [Homo sapiens]
Length = 2526
Score = 43.9 bits (102), Expect = 2e-04
Identities = 47/190 (24%), Positives = 72/190 (37%), Gaps = 7/190 (3%)
Query: 132 RSGSRVCRSRPQTRGGGGKKPRRQKDAAAGAKSRGGKKPRRGRKPRR--RGQKSTAAGAK 189
RSG + + P +RG G++ +R +G G G + + +G +
Sbjct: 1538 RSGQKGVQGSPSSRGSRGREGQRGLRGVSGEPGNPGPTGTLGAEGLQGPQGSQGNPGRKG 1597
Query: 190 SRGEGGKKPRQQKPAAAGAKSGLGDKKSRRWGRK-KPGRWGQEAVAGETCGGGGKKPQKA 248
+G G+K Q P GAK G + G+K +PG G G+T G +
Sbjct: 1598 EKGSQGQKGPQGSPGLMGAKGSTG--RPGLLGKKGEPGLPGDLGPVGQTGQRGRQGDSGI 1655
Query: 249 AAPGAKSHK--KPRRQWQKAAAEKVAVAGAESCGGRGQKAAAARAKSGGFGGKKQRRRGQ 306
G K K R + A +K + GG G K A + G G++ R
Sbjct: 1656 PGYGQMGRKGVKGPRGFPGDAGQKGDIGNPGIPGGPGPKGFRGLALTVGLKGEEGSRGLP 1715
Query: 307 RAPKSRGGRG 316
P RG +G
Sbjct: 1716 GPPGQRGIKG 1725
Score = 37.7 bits (86), Expect = 0.013
Identities = 48/208 (23%), Positives = 72/208 (34%), Gaps = 33/208 (15%)
Query: 134 GSRVCRSRPQTRGGGGKKPRRQKDAAAGAKSRGGKKP------RRGRKPRRRGQKSTAAG 187
G C P +G G + + GA + G+K G+ +GQK +
Sbjct: 1473 GEEGCHGFPGIKGEKGDPGSQGSPGSRGAPGQYGEKGFPGDPGNPGQNNNIKGQKGSKGE 1532
Query: 188 AKSRGEGGKKPRQQKPAAAGAKSGLGDKKSRRWGRKKPGRWGQEAVAGETCGGGGKKPQK 247
+G G+K Q P++ G++ ++ +R R G G G G + PQ
Sbjct: 1533 QGRQGRSGQKGVQGSPSSRGSRG----REGQRGLRGVSGEPGNPGPTGTLGAEGLQGPQG 1588
Query: 248 AAA-PGAKSHKKPRRQWQKAAAEKVAVAGAESCGGR-------------------GQKAA 287
+ PG K K Q QK + GA+ GR GQ
Sbjct: 1589 SQGNPGRKGEK--GSQGQKGPQGSPGLMGAKGSTGRPGLLGKKGEPGLPGDLGPVGQTGQ 1646
Query: 288 AARAKSGGFGGKKQR-RRGQRAPKSRGG 314
R G G Q R+G + P+ G
Sbjct: 1647 RGRQGDSGIPGYGQMGRKGVKGPRGFPG 1674
Score = 28.5 bits (62), Expect = 8.2
Identities = 33/139 (23%), Positives = 45/139 (32%), Gaps = 8/139 (5%)
Query: 179 RGQKSTAAGAKSRGEGGKKPRQQKPAAAGAKSGLGDKKSRRWGRKKPGRWGQEAVAGET- 237
RG ++ +G G + P G GDK PG WGQ+ + G +
Sbjct: 1403 RGLQAMKGSQGLKGSRGHRGEDGNPGVRGDTGPQGDKGIAGC----PGAWGQKGLKGFSG 1458
Query: 238 -CGGGGKKPQKAAAPGAKSHKKPRRQWQKAAAEKVAVAGAESCGGRGQKAAAARAKSGGF 296
GG G H P + +K G S G GQ G
Sbjct: 1459 PKGGHGDDGIDGLDGEEGCHGFPGIKGEKGDPGSQGSPG--SRGAPGQYGEKGFPGDPGN 1516
Query: 297 GGKKQRRRGQRAPKSRGGR 315
G+ +GQ+ K GR
Sbjct: 1517 PGQNNNIKGQKGSKGEQGR 1535
>gi|239756028 PREDICTED: hypothetical protein [Homo sapiens]
Length = 255
Score = 43.5 bits (101), Expect = 2e-04
Identities = 59/210 (28%), Positives = 76/210 (36%), Gaps = 43/210 (20%)
Query: 127 SQDASRSGSRV-CRSRPQTRGG------------GGKKPRRQKDAAAGAKSRGGKKPRRG 173
SQ R G+ C P+++GG GG P+ G KS+GGK
Sbjct: 66 SQSLPRGGASARCDGGPKSQGGKRGWLSVPSLPRGGASPQ----CDGGPKSQGGKSGWLS 121
Query: 174 RKPRRRGQKSTAAGAKSRGEGGKKPRQQKPAAAGA----KSGLGDKKSRRW---GRKKPG 226
P RG A R GG+ Q P A +G +++R G + P
Sbjct: 122 -VPASRGVAPPGAMGILRARGGRGTGSQSPLPASLGVPPPPAMGVQRARGGRGVGSESPP 180
Query: 227 RWGQEAVAGETCGGGGKKPQKAAAPGAKSHKKPRRQWQKAAAEKVAVAGAESCGGRGQKA 286
RWG TC GG K + G + W + + V A GGRG
Sbjct: 181 RWG----CLPTCDGGPK-----SQGGKRGWLSVPASWVVSPTPAMGVLRAR--GGRGVAL 229
Query: 287 AAARAKSGGFGGKKQRRRGQRAPKSRGGRG 316
+ GG R G PKSRGGRG
Sbjct: 230 SPYL-----MGGASPRCDGD--PKSRGGRG 252
>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
Length = 426
Score = 43.5 bits (101), Expect = 2e-04
Identities = 66/226 (29%), Positives = 85/226 (37%), Gaps = 40/226 (17%)
Query: 82 SHRGRAQRRSMHAAAAQERSLGRGCLGKEPPN--RESWTRSDPR-HCISQDASRSGSRVC 138
S G+ + AA ++RSL R CL + + R S S PR HC R C
Sbjct: 123 SSAGKRPAAAARAAPPRQRSLAR-CLPRSVGSCVRPSVGPSLPRRHC-----RRHCRCHC 176
Query: 139 RSRP-------QTRGGGGKKPRRQKDAAAGAKSRGGKKPRRGRKPRRRGQKSTAAGAKSR 191
R RP Q R G PR AA A SR R+ RRR ++S A
Sbjct: 177 RRRPLPKPPPLQPRLGSASPPRL---AAPLAGSRAPSLSPFPRRCRRRAERSPA------ 227
Query: 192 GEGGKKPRQQKPAA--AGAKSGLGDKKSRRWGRKKPGRWGQEAVAGETCGGGGKKPQKAA 249
G G PR GA+ G ++ R GR++ G + P A
Sbjct: 228 GHGLPLPRSLSRGGEVVGARRRRGGEERRVRGRRQGCALGSPPI-----------PAGPA 276
Query: 250 APGAKSHKKPRRQWQKAAAEKVAV--AGAESCGGRGQKAAAARAKS 293
APG ++ RQW+K GA+ G RG AR S
Sbjct: 277 APGRAGERRAARQWRKRGGGPGVSPREGAQGEGVRGGVTPRARGSS 322
>gi|60097902 filaggrin [Homo sapiens]
Length = 4061
Score = 43.1 bits (100), Expect = 3e-04
Identities = 60/245 (24%), Positives = 96/245 (39%), Gaps = 32/245 (13%)
Query: 74 PATALLPLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRE------------------ 115
P+T + SH +A+ S H+A+ + RG G R+
Sbjct: 812 PSTGVRQGSHHEQARDNSRHSASQDGQDTIRGHPGSSRRGRQGSHHEQSVDRSGHSGSHH 871
Query: 116 SWTRSDPRHCIS--QDASRSGSRVCRSRPQTRGGGGKKPRRQKDAAAGA----KSRGGKK 169
S T S R S Q SRS SR R+ Q+R G R +A++ A S+ G+
Sbjct: 872 SHTTSQGRSDASRGQSGSRSASRTTRNEEQSRDGSRHSGSRHHEASSHADISRHSQAGQG 931
Query: 170 PRRGRKPRRRGQKSTAAGAKSRGEGGKKPRQQKPAAAGAKSGLGDKKSRRWGRKKPGRWG 229
G + RR S + + S G R A+ + G ++SR G + P R
Sbjct: 932 QSEGSRTSRRQGSSVSQDSDSEGHSEDSERWSGSASRNHR-GSAQEQSRH-GSRHP-RSH 988
Query: 230 QEAVAGETCGGGGKKPQKAAAPGAKSHKKPRRQWQKAAAEKVAVAGAESCGGRGQKAAAA 289
E AG G +++ P A++ + ++ E+ + E G R Q++A +
Sbjct: 989 HEDRAGH--GHSADSSRQSGTPHAETSSGGQ---AASSHEQARSSPGERHGSRHQQSADS 1043
Query: 290 RAKSG 294
SG
Sbjct: 1044 SRHSG 1048
Score = 34.3 bits (77), Expect = 0.15
Identities = 45/191 (23%), Positives = 68/191 (35%), Gaps = 30/191 (15%)
Query: 82 SHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRSDPRHCISQDASRSGSRVCRSR 141
S R RR + + S G E R S + S Q+ SR GSR RS
Sbjct: 3202 SEGSRRSRRQGSSVSQDSDSEGHS----EDSERWSGSASRNHRGSVQEQSRHGSRHPRSH 3257
Query: 142 PQTRGGGGKKPRRQK-------DAAAGAKSRGGKKPRRGRKPRRRGQKSTAAGAKSRGEG 194
+ R G G R + + ++G ++ + R R G + + SR G
Sbjct: 3258 HEDRAGHGHSADRSRQSGTRHAETSSGGQAASSHEQARSSPGERHGSRHQQSADSSRHSG 3317
Query: 195 GKKPRQQKPAAAGAKSGLGDKKSRRWG----RKKPGRWGQEAVAGETCGGGGKKPQKAAA 250
PR Q +A + SR WG + E ++ G G+ A
Sbjct: 3318 --IPRGQASSAV--------RDSRHWGSSGSQASDSEGHSEESDTQSVSGHGQ-----AG 3362
Query: 251 PGAKSHKKPRR 261
P +SH++ R
Sbjct: 3363 PHQQSHQESAR 3373
Score = 33.9 bits (76), Expect = 0.19
Identities = 58/271 (21%), Positives = 94/271 (34%), Gaps = 37/271 (13%)
Query: 74 PATALLPLSHRGRAQRRSMHAAAA---------------------QERSLGR-GCLGKEP 111
P+T SH +AQ S H+A+ QE+S+ R G G
Sbjct: 2109 PSTGGRQGSHYDQAQDSSRHSASQEGQDTIRGHPGPSRGGRQGSHQEQSVDRSGHSGSHH 2168
Query: 112 PNRESWTRSDPRHCISQDASRSGSRVCRSRPQTRGGGGKKPRRQKDAAAGAKSRGGKKPR 171
+ S RSD Q SRS SR + Q+ G +A++ A S
Sbjct: 2169 SHTTSQGRSDASR--GQSGSRSASRKTYDKEQSGDGSRHSGSHHHEASSWADSSRHSLVG 2226
Query: 172 RGRK--PRRRGQKSTAAGAKSRGEGGKKPRQQKPAAAGAK-SGLGDKKSRRWGRKKPGRW 228
+G+ PR + ++ S EG + +++ +A G ++SR R
Sbjct: 2227 QGQSSGPRTSRPRGSSVSQDSDSEGHSEDSERRSGSASRNHHGSAQEQSRDGSRHPRSHH 2286
Query: 229 GQEAVAGETC-----GGGGKKPQKAAAPGAKSHKKPRRQ-WQKAAAEKVAVAGAESCGGR 282
A G + G + A SH++ R ++ + A + G
Sbjct: 2287 EDRAGHGHSAESSRQSGTHHAENSSGGQAASSHEQARSSAGERHGSHHQQSADSSRHSGI 2346
Query: 283 GQKAAAARAKSGGFGGKKQRRRGQRAPKSRG 313
G A++ + G G G +A S G
Sbjct: 2347 GHGQASSAVRDSGHRGSS----GSQASDSEG 2373
Score = 32.3 bits (72), Expect = 0.57
Identities = 33/181 (18%), Positives = 68/181 (37%), Gaps = 10/181 (5%)
Query: 139 RSRPQTRGGGGKKPRRQKDAAAGAKSRGGKKPRRGRKPRRRGQKSTAAGAKSRGEGGKKP 198
R+ P T G G + + +D++ + S+ G+ RG RRG + + +S G
Sbjct: 3726 RAGPSTGGRQGSRHEQARDSSRHSASQEGQDTIRGHPGSRRGGRQGSYHEQSVDRSGHSG 3785
Query: 199 RQQKPAAAGAKSGLGDKKSRRWGRKKPGRWGQEAVAGETCGGGGKKPQKAAAPGAKSHKK 258
+ +S +S + R E +G+ G + +A+ S
Sbjct: 3786 SHHSHTTSQGRSDASHGQSGSRSASRETR--NEEQSGDGSRHSGSRHHEASTQADSSRHS 3843
Query: 259 PRRQWQKAAAEKVAVAG--------AESCGGRGQKAAAARAKSGGFGGKKQRRRGQRAPK 310
Q + A + + G +E+ ++ + + +++ ++Q R G R P
Sbjct: 3844 QSGQGESAGSRRSRRQGSSVSQDSDSEAYPEDSERRSESASRNHHGSSREQSRDGSRHPG 3903
Query: 311 S 311
S
Sbjct: 3904 S 3904
Score = 32.0 bits (71), Expect = 0.74
Identities = 54/263 (20%), Positives = 93/263 (35%), Gaps = 41/263 (15%)
Query: 82 SHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRSDPRHCISQDASRSGSRVCRSR 141
S+ ++ RS H+ + +G + + +S RS R +++ S GSR SR
Sbjct: 1503 SYHEQSVDRSGHSGYHHSHTTPQG--RSDASHGQSGPRSASRQTRNEEQSGDGSRHSGSR 1560
Query: 142 ---PQTRGG-------------GGKKPRRQ--------------KDAAAGAKSRGGKKPR 171
P TR G G K RRQ +D+ ++S
Sbjct: 1561 HHEPSTRAGSSRHSQVGQGESAGSKTSRRQGSSVSQDRDSEGHSEDSERRSESASRNHYG 1620
Query: 172 RGRKPRRRGQKSTAAGAKSR---GEGGKKPRQQKPAAAGAKSGLGDKKSRRWGRKKPG-R 227
R+ R G ++ + + R G + RQ A SG S+ R PG R
Sbjct: 1621 SAREQSRHGSRNPRSHQEDRASHGHSAESSRQSGTRHAETSSGGQAASSQEQARSSPGER 1680
Query: 228 WG---QEAVAGETCGGGGKKPQKAAA--PGAKSHKKPRRQWQKAAAEKVAVAGAESCGGR 282
G Q++ T G G++ + G + + + +E+ + G
Sbjct: 1681 HGSRHQQSADSSTDSGTGRRQDSSVVGDSGNRGSSGSQASDSEGHSEESDTQSVSAHGQA 1740
Query: 283 GQKAAAARAKSGGFGGKKQRRRG 305
G + + + G G++ R G
Sbjct: 1741 GPHQQSHQESTRGQSGERSGRSG 1763
Score = 32.0 bits (71), Expect = 0.74
Identities = 37/162 (22%), Positives = 63/162 (38%), Gaps = 24/162 (14%)
Query: 110 EPPNRESWTRSDPRHCISQDASRSGSRVCRSRPQTRGGGG--KKPRRQKDAAAGAKSRGG 167
E R S + S H +Q+ SR GSR RS + R G G + RQ S GG
Sbjct: 2254 EDSERRSGSASRNHHGSAQEQSRDGSRHPRSHHEDRAGHGHSAESSRQSGTHHAENSSGG 2313
Query: 168 KKPRRGRKPRRRGQKSTAAGAKSRGEGGKK--PRQQKPAAAGAKSGLGDKKSRRWGRKKP 225
++ ++ ++R G++ Q+ A + SG+G ++ R
Sbjct: 2314 --------------QAASSHEQARSSAGERHGSHHQQSADSSRHSGIGHGQASSAVRDSG 2359
Query: 226 GRWGQEAVAGETCGGGGKKPQKA------AAPGAKSHKKPRR 261
R + A ++ G ++ A P +SH++ R
Sbjct: 2360 HRGSSGSQASDSEGHSEDSDTQSVSAHGQAGPHQQSHQESTR 2401
Score = 31.6 bits (70), Expect = 0.96
Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 9/124 (7%)
Query: 115 ESWTRSDPR--HCISQDASRSGSRVCRSRPQTRGGGGKKPRRQKDAAAGAKSRGGKKPRR 172
E W+ S R H +Q+ SR GSR RS + R G G D++ + +R +
Sbjct: 635 ERWSGSASRNHHGSAQEQSRDGSRHPRSHHEDRAGHG----HSADSSRKSGTRHTQNSSS 690
Query: 173 GRKPRRRGQKSTAAGAKSRGEGGKKPRQQKPAAAGAKSGLGDKKSRRWGRKKPGRWGQEA 232
G+ Q ++AG + G + Q ++ + +G G S G G +A
Sbjct: 691 GQAASSHEQARSSAGER---HGSRHQLQSADSSRHSGTGHGQASSAVRDSGHRGSSGSQA 747
Query: 233 VAGE 236
E
Sbjct: 748 TDSE 751
Score = 30.4 bits (67), Expect = 2.1
Identities = 29/120 (24%), Positives = 42/120 (35%), Gaps = 11/120 (9%)
Query: 82 SHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRSDPRHCISQDASRSGSRVCRSR 141
S R RR + + S G E R S + S H +Q+ R GSR RS
Sbjct: 2878 SEGSRRSRRQGSSVSQDSDSEGHS----EDSERWSGSASRNHHGSAQEQLRDGSRHPRSH 2933
Query: 142 PQTRGGGG-------KKPRRQKDAAAGAKSRGGKKPRRGRKPRRRGQKSTAAGAKSRGEG 194
+ R G G + R ++G ++ + R R G + SR G
Sbjct: 2934 QEDRAGHGHSADSSRQSGTRHTQTSSGGQAASSHEQARSSAGERHGSHHQQSADSSRHSG 2993
Score = 29.3 bits (64), Expect = 4.8
Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 9/89 (10%)
Query: 115 ESWTRSDPR--HCISQDASRSGSRVCRSRPQTRGGGG-------KKPRRQKDAAAGAKSR 165
E W+ S R H +Q+ R GSR RS + R G G + R ++G ++
Sbjct: 2581 ERWSGSASRNHHGSAQEQLRDGSRHPRSHQEDRAGHGHSADSSRQSGTRHTQTSSGGQAA 2640
Query: 166 GGKKPRRGRKPRRRGQKSTAAGAKSRGEG 194
+ R R G + SR G
Sbjct: 2641 SSHEQARSSAGERHGSHHQQSADSSRHSG 2669
Score = 28.9 bits (63), Expect = 6.2
Identities = 36/184 (19%), Positives = 68/184 (36%), Gaps = 16/184 (8%)
Query: 139 RSRPQTRGGGGKKPRRQKDAAAGAKSRGGKKPRRGRKPRRRGQKSTAAGAKSRGEGGKK- 197
++ P T G G + + ++++ + S+ G+ RG RG + + +S G
Sbjct: 1457 QTAPSTGGRQGSRHEQARNSSRHSASQDGQDTIRGHPGSSRGGRQGSYHEQSVDRSGHSG 1516
Query: 198 -------PRQQKPAA---AGAKSGLGDKKSRRWGRKKPGRWGQEAVAGETCGGGGKKPQK 247
P+ + A+ +G +S ++ G T G + Q
Sbjct: 1517 YHHSHTTPQGRSDASHGQSGPRSASRQTRNEEQSGDGSRHSGSRHHEPSTRAGSSRHSQV 1576
Query: 248 AAAPGAKSHKKPRRQWQKAAAEKVAVAGAESCGGRGQKAAAARAKSGGFGGKKQRRRGQR 307
A S K RRQ + ++ + +E R + A+ S ++Q R G R
Sbjct: 1577 GQGESAGS-KTSRRQGSSVSQDRDSEGHSEDSERRSESASRNHYGS----AREQSRHGSR 1631
Query: 308 APKS 311
P+S
Sbjct: 1632 NPRS 1635
>gi|9966841 cell death regulator aven [Homo sapiens]
Length = 362
Score = 43.1 bits (100), Expect = 3e-04
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 158 AAAGAKSRGGKKPRRGRKPR-RRGQKSTAAGAKSRGEGG--------KKPRQQKPAAAGA 208
A GA+ G++P RGR R ++ AA A +RG GG ++ R + GA
Sbjct: 3 AERGARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFRGA 62
Query: 209 KSGLGDKKSRRWGRKKPGRWGQEAVA 234
+ G G + R R++PG WG A A
Sbjct: 63 RGGRGGGGAPRGSRREPGGWGAGASA 88
Score = 33.1 bits (74), Expect = 0.33
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 19/78 (24%)
Query: 239 GGGGKKPQKAAAPGAKSHKKPRRQWQKAAAEKVAVAGAESCGGRGQKAAAARAKSGGFGG 298
GG G++P + G + ++P AA VA G GG G GG
Sbjct: 9 GGRGRRPGRGRPGGDRHSERP------GAAAAVARGGGGGGGGDG-------------GG 49
Query: 299 KKQRRRGQRAPKSRGGRG 316
++ R RG+ +RGGRG
Sbjct: 50 RRGRGRGRGFRGARGGRG 67
>gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens]
Length = 360
Score = 42.7 bits (99), Expect = 4e-04
Identities = 49/227 (21%), Positives = 84/227 (37%), Gaps = 36/227 (15%)
Query: 84 RGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRSDPRHCISQDASRSGSRVCRSRPQ 143
R A+R ++ AA + RGC + P + A +R +
Sbjct: 29 RACAERAALEVGAASADTGVRGCGARGPAP------------LLASAGGGRARDGTWGVR 76
Query: 144 TRGGGGKKPRRQKDAAAGAKSRGGKKPRRGRKP----RRRGQKSTAAGAKSRGEGGKKPR 199
T+G G P R SR +P P + RG S G ++RG
Sbjct: 77 TKGSGAALPSRPA-------SRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGS 129
Query: 200 QQKPAAAGAKSGLGDKKSRRWGRKKPGRWGQEAVAGETCGGGGKKPQKAA-APGAKSHKK 258
+++ + G G +K ++ RK R C + +KA+ APGA++
Sbjct: 130 RKRSRSRSRSRGRGSEKRKKKSRKDTSR---------NCSASTSQGRKASTAPGAEASPS 180
Query: 259 P---RRQWQKAAAEKVAVAGAESCGGRGQKAAAARAKSGGFGGKKQR 302
P R QKA + + + S ++++ + S G+K+R
Sbjct: 181 PCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKR 227
Score = 34.3 bits (77), Expect = 0.15
Identities = 45/208 (21%), Positives = 74/208 (35%), Gaps = 16/208 (7%)
Query: 71 RVTPATALLPLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRSDPRHCISQDA 130
R + A LP RA R ++ RG L R R H S+
Sbjct: 76 RTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGR---ARGAMAHVGSRKR 132
Query: 131 SRSGSRVCRSRPQTRGGGGKKPRRQKDAAAGAKSRGGKKPRRGRKPRRRGQKSTAAGAKS 190
SRS RSR + RG +K + +KD + + + + P S +S
Sbjct: 133 SRS-----RSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITERS 187
Query: 191 RGEGGKKPRQQKPAAAGAKSGLGDKKSRRW-----GRKKPGRWGQEAVAGETCGGGGKKP 245
+ + ++ R +++ + S S GRKK G++ + + KK
Sbjct: 188 KQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKK 247
Query: 246 QKAAAPGAKSHKKP---RRQWQKAAAEK 270
K A + P QW ++A E+
Sbjct: 248 GKEKAEAQQVEALPGPSLDQWHRSAGEE 275
>gi|169160983 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 42.4 bits (98), Expect = 5e-04
Identities = 44/158 (27%), Positives = 61/158 (38%), Gaps = 34/158 (21%)
Query: 76 TALLPLSHRGRAQRRSMHAAAAQERSLG------RGCLGKEPPN---RESWTRSDPRHCI 126
+AL L A+ + + A+ LG GC G EPP R W R
Sbjct: 47 SALRSLLAGAEARFQGLEEKASSGEGLGWRGGRETGCGGWEPPKPLGRRHWRRE------ 100
Query: 127 SQDASRSGSRVCRSRPQTRGGGGKKPRRQKDAAAGAKSRGGKK-----------PRRGRK 175
+S + P+ G G++ R +G SRGG + PRRG +
Sbjct: 101 ----GQSSRQRTADFPREEGALGRRLRPSPRGKSGGGSRGGSRRALVLSSLQDPPRRGHR 156
Query: 176 ---PRRRGQKSTAAGAKSRGEGGKKPRQQKPAAAGAKS 210
RRRG AAG RG G ++ + A GA+S
Sbjct: 157 CLRERRRGS-GVAAGTLLRGRGRRREAGTRRPAQGARS 193
Score = 29.3 bits (64), Expect = 4.8
Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 14/108 (12%)
Query: 208 AKSGLGDKKSRRWGRKKPGRWGQEAVAGETCGGGGKKPQKAAAPGAKSHKKPRRQWQKAA 267
A SGL K+ R G + W E GE G G+ A W ++A
Sbjct: 2 AGSGLESGKTLRVGSWREENWETEVQGGEGSGRSGRFVGNAT-------------WWRSA 48
Query: 268 AEKVAVAGAESCGGRGQKAAAARAKSGGFGGKKQRRRGQRAPKSRGGR 315
+ +AGAE+ ++ A++ G GG++ G PK G R
Sbjct: 49 LRSL-LAGAEARFQGLEEKASSGEGLGWRGGRETGCGGWEPPKPLGRR 95
>gi|31652242 transcription factor 20 isoform 2 [Homo sapiens]
Length = 1938
Score = 42.4 bits (98), Expect = 5e-04
Identities = 55/255 (21%), Positives = 88/255 (34%), Gaps = 42/255 (16%)
Query: 34 GAQPAQAANGDADELLELPALLQLPAGCDPCASLRDSRVTPATALLPLSHRG--RAQRRS 91
G+ PAQ A + L PA R+ +P +PLS G + ++
Sbjct: 557 GSSPAQGAQNEPPRLNASPAA-------------REEATSPGAKDMPLSSDGNPKVNEKT 603
Query: 92 MHAAAAQERSLGRGCLGKEPPNRESWTRSDPRHCISQDASRSG----SRVCRSRPQTRGG 147
+ ++E GR ++P ++ ++ D + S G S +P+ GG
Sbjct: 604 VGVIVSREAMTGRV---EKPGGQDKGSQEDDPAATQRPPSNGGAKETSHASLPQPEPPGG 660
Query: 148 GGKKPRRQKDAAAGAKSRGGKKPRRGRKPRRRGQKSTAAGAKSRGEGGKKPRQQKPAAAG 207
GG K G K+ G + G + G SR E K P +
Sbjct: 661 GGSK---------GNKNGDNNSNHNGEGNGQSGHSAAGPGFTSRTEPSKSPGSLR---YS 708
Query: 208 AKSGLGDKKSRRWGRKKPGRWGQEAVAGETCGGGGKKPQKAAAPGAKS------HKKPRR 261
K G R GQE G+ G G +K + P H P R
Sbjct: 709 YKDSFGSAVPRNVSGFPQYPTGQE--KGDFTGHGERKGRNEKFPSLLQEVLQGYHHHPDR 766
Query: 262 QWQKAAAEKVAVAGA 276
++ ++ E +AG+
Sbjct: 767 RYSRSTQEHQGMAGS 781
Score = 32.0 bits (71), Expect = 0.74
Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 3/106 (2%)
Query: 174 RKPRRRGQKSTAAGAKSRGEGGKKPRQQ-KPAAAGAKSGLGDKKSRRWGRKKPGRWGQEA 232
+K +R S A + + EG +P +Q K A + G S G + GQ
Sbjct: 483 KKTSKRPSSSKKADSCTNSEGSSQPEEQLKSPMAESLDGGCSSSSEDQGERVRQLSGQST 542
Query: 233 VAGETC-GGGGKKPQKAAAPGAKSHKKPRRQWQKAAAEKVAVAGAE 277
+ T GG +K + A GA++ + PR AA E+ GA+
Sbjct: 543 SSDTTYKGGASEKAGSSPAQGAQN-EPPRLNASPAAREEATSPGAK 587
>gi|31652244 transcription factor 20 isoform 1 [Homo sapiens]
Length = 1960
Score = 42.4 bits (98), Expect = 5e-04
Identities = 55/255 (21%), Positives = 88/255 (34%), Gaps = 42/255 (16%)
Query: 34 GAQPAQAANGDADELLELPALLQLPAGCDPCASLRDSRVTPATALLPLSHRG--RAQRRS 91
G+ PAQ A + L PA R+ +P +PLS G + ++
Sbjct: 557 GSSPAQGAQNEPPRLNASPAA-------------REEATSPGAKDMPLSSDGNPKVNEKT 603
Query: 92 MHAAAAQERSLGRGCLGKEPPNRESWTRSDPRHCISQDASRSG----SRVCRSRPQTRGG 147
+ ++E GR ++P ++ ++ D + S G S +P+ GG
Sbjct: 604 VGVIVSREAMTGRV---EKPGGQDKGSQEDDPAATQRPPSNGGAKETSHASLPQPEPPGG 660
Query: 148 GGKKPRRQKDAAAGAKSRGGKKPRRGRKPRRRGQKSTAAGAKSRGEGGKKPRQQKPAAAG 207
GG K G K+ G + G + G SR E K P +
Sbjct: 661 GGSK---------GNKNGDNNSNHNGEGNGQSGHSAAGPGFTSRTEPSKSPGSLR---YS 708
Query: 208 AKSGLGDKKSRRWGRKKPGRWGQEAVAGETCGGGGKKPQKAAAPGAKS------HKKPRR 261
K G R GQE G+ G G +K + P H P R
Sbjct: 709 YKDSFGSAVPRNVSGFPQYPTGQE--KGDFTGHGERKGRNEKFPSLLQEVLQGYHHHPDR 766
Query: 262 QWQKAAAEKVAVAGA 276
++ ++ E +AG+
Sbjct: 767 RYSRSTQEHQGMAGS 781
Score = 32.0 bits (71), Expect = 0.74
Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 3/106 (2%)
Query: 174 RKPRRRGQKSTAAGAKSRGEGGKKPRQQ-KPAAAGAKSGLGDKKSRRWGRKKPGRWGQEA 232
+K +R S A + + EG +P +Q K A + G S G + GQ
Sbjct: 483 KKTSKRPSSSKKADSCTNSEGSSQPEEQLKSPMAESLDGGCSSSSEDQGERVRQLSGQST 542
Query: 233 VAGETC-GGGGKKPQKAAAPGAKSHKKPRRQWQKAAAEKVAVAGAE 277
+ T GG +K + A GA++ + PR AA E+ GA+
Sbjct: 543 SSDTTYKGGASEKAGSSPAQGAQN-EPPRLNASPAAREEATSPGAK 587
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.130 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,461,768
Number of Sequences: 37866
Number of extensions: 865034
Number of successful extensions: 7316
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 698
Number of HSP's that attempted gapping in prelim test: 5019
Number of HSP's gapped (non-prelim): 1894
length of query: 316
length of database: 18,247,518
effective HSP length: 102
effective length of query: 214
effective length of database: 14,385,186
effective search space: 3078429804
effective search space used: 3078429804
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.