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Search of human proteins with 239757934
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757934 PREDICTED: hypothetical protein [Homo sapiens]
(77 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757934 PREDICTED: hypothetical protein [Homo sapiens] 164 1e-41
gi|239752441 PREDICTED: hypothetical protein XP_002348273 [Homo ... 164 1e-41
gi|239743069 PREDICTED: hypothetical protein XP_002342750 [Homo ... 33 0.065
gi|239508715 PREDICTED: hypothetical protein [Homo sapiens] 33 0.065
gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo ... 30 0.32
gi|239752904 PREDICTED: hypothetical protein [Homo sapiens] 30 0.32
gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo ... 30 0.32
gi|239747453 PREDICTED: hypothetical protein XP_002347537 [Homo ... 30 0.32
gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo ... 30 0.32
gi|239741327 PREDICTED: hypothetical protein XP_002342174 [Homo ... 30 0.32
gi|239747656 PREDICTED: similar to mCG116201 [Homo sapiens] 30 0.55
gi|221139926 NHS-like 1 [Homo sapiens] 28 1.6
gi|38569493 potassium voltage-gated channel, subfamily H (eag-re... 28 1.6
gi|229577180 MPN domain containing isoform 2 [Homo sapiens] 28 2.1
gi|31542699 MPN domain containing isoform 1 [Homo sapiens] 28 2.1
gi|239754472 PREDICTED: hypothetical protein [Homo sapiens] 28 2.1
gi|239749029 PREDICTED: hypothetical protein [Homo sapiens] 28 2.1
gi|239743045 PREDICTED: hypothetical protein XP_002342699 [Homo ... 28 2.1
gi|109255251 loricrin [Homo sapiens] 28 2.1
gi|40255016 membrane-associated RING-CH protein IX [Homo sapiens] 28 2.1
gi|40805843 K(lysine) acetyltransferase 2B [Homo sapiens] 27 2.7
gi|54873613 agrin [Homo sapiens] 27 2.7
gi|239749044 PREDICTED: hypothetical protein XP_002346891 [Homo ... 27 2.7
gi|11321640 basic beta 1 syntrophin [Homo sapiens] 27 2.7
gi|239744725 PREDICTED: hypothetical protein XP_002343253 [Homo ... 27 3.5
gi|92859871 SMAD family member 6 isoform 1 [Homo sapiens] 27 3.5
gi|157266269 GATA like protein-1 [Homo sapiens] 27 3.5
gi|57864582 hornerin [Homo sapiens] 27 4.6
gi|169211438 PREDICTED: hypothetical protein [Homo sapiens] 27 4.6
gi|169211910 PREDICTED: hypothetical protein [Homo sapiens] 27 4.6
>gi|239757934 PREDICTED: hypothetical protein [Homo sapiens]
Length = 77
Score = 164 bits (415), Expect = 1e-41
Identities = 77/77 (100%), Positives = 77/77 (100%)
Query: 1 MQAGCAGSGKGESDDTLEELQDQHAPAAARGGPCGMGPGCSSTSGDLEALCCSTQLNALV 60
MQAGCAGSGKGESDDTLEELQDQHAPAAARGGPCGMGPGCSSTSGDLEALCCSTQLNALV
Sbjct: 1 MQAGCAGSGKGESDDTLEELQDQHAPAAARGGPCGMGPGCSSTSGDLEALCCSTQLNALV 60
Query: 61 GSRRDGANLLMAWDGQQ 77
GSRRDGANLLMAWDGQQ
Sbjct: 61 GSRRDGANLLMAWDGQQ 77
>gi|239752441 PREDICTED: hypothetical protein XP_002348273 [Homo
sapiens]
Length = 77
Score = 164 bits (415), Expect = 1e-41
Identities = 77/77 (100%), Positives = 77/77 (100%)
Query: 1 MQAGCAGSGKGESDDTLEELQDQHAPAAARGGPCGMGPGCSSTSGDLEALCCSTQLNALV 60
MQAGCAGSGKGESDDTLEELQDQHAPAAARGGPCGMGPGCSSTSGDLEALCCSTQLNALV
Sbjct: 1 MQAGCAGSGKGESDDTLEELQDQHAPAAARGGPCGMGPGCSSTSGDLEALCCSTQLNALV 60
Query: 61 GSRRDGANLLMAWDGQQ 77
GSRRDGANLLMAWDGQQ
Sbjct: 61 GSRRDGANLLMAWDGQQ 77
>gi|239743069 PREDICTED: hypothetical protein XP_002342750 [Homo
sapiens]
Length = 231
Score = 32.7 bits (73), Expect = 0.065
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 6 AGSGKGESDDTLEELQDQHAPAAARGGPCGMGPGCSS 42
A ES DT EE ++ APA A GG G G GC +
Sbjct: 58 AAPATAESPDTPEEPPEEPAPAIAPGGSGGGGGGCGA 94
>gi|239508715 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 32.7 bits (73), Expect = 0.065
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 6 AGSGKGESDDTLEELQDQHAPAAARGGPCGMGPGCSS 42
A ES DT EE ++ APA A GG G G GC +
Sbjct: 58 AAPATAESPDTPEEPPEEPAPAIAPGGSGGGGGGCGA 94
>gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo
sapiens]
Length = 355
Score = 30.4 bits (67), Expect = 0.32
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 9/47 (19%)
Query: 5 CAGSGKGESDDTLEELQDQHA---------PAAARGGPCGMGPGCSS 42
CAG+G + L + H+ P+ RG CG+GPG S
Sbjct: 125 CAGAGNSRAGGGLTKYNSAHSSSRVPRPRLPSQRRGASCGLGPGPES 171
>gi|239752904 PREDICTED: hypothetical protein [Homo sapiens]
Length = 282
Score = 30.4 bits (67), Expect = 0.32
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Query: 18 EELQDQHAPAAARGGPCGMGPGCSSTSGDLEALC 51
E LQD H+PA+ P G G G GD++ +C
Sbjct: 175 ERLQDVHSPASQLQAPAGQGRG-----GDIDEMC 203
>gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo
sapiens]
Length = 355
Score = 30.4 bits (67), Expect = 0.32
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 9/47 (19%)
Query: 5 CAGSGKGESDDTLEELQDQHA---------PAAARGGPCGMGPGCSS 42
CAG+G + L + H+ P+ RG CG+GPG S
Sbjct: 125 CAGAGNSRAGGGLTKYNSAHSSSRVPRPRLPSQRRGASCGLGPGPES 171
>gi|239747453 PREDICTED: hypothetical protein XP_002347537 [Homo
sapiens]
Length = 282
Score = 30.4 bits (67), Expect = 0.32
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Query: 18 EELQDQHAPAAARGGPCGMGPGCSSTSGDLEALC 51
E LQD H+PA+ P G G G GD++ +C
Sbjct: 175 ERLQDVHSPASQLQAPAGQGRG-----GDIDEMC 203
>gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo
sapiens]
Length = 355
Score = 30.4 bits (67), Expect = 0.32
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 9/47 (19%)
Query: 5 CAGSGKGESDDTLEELQDQHA---------PAAARGGPCGMGPGCSS 42
CAG+G + L + H+ P+ RG CG+GPG S
Sbjct: 125 CAGAGNSRAGGGLTKYNSAHSSSRVPRPRLPSQRRGASCGLGPGPES 171
>gi|239741327 PREDICTED: hypothetical protein XP_002342174 [Homo
sapiens]
Length = 282
Score = 30.4 bits (67), Expect = 0.32
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Query: 18 EELQDQHAPAAARGGPCGMGPGCSSTSGDLEALC 51
E LQD H+PA+ P G G G GD++ +C
Sbjct: 175 ERLQDVHSPASQLQAPAGQGRG-----GDIDEMC 203
>gi|239747656 PREDICTED: similar to mCG116201 [Homo sapiens]
Length = 591
Score = 29.6 bits (65), Expect = 0.55
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 26 PAAARGGPCGMGPGCSSTSGDLEAL 50
P AA PC M GC GD+ AL
Sbjct: 537 PRAAARAPCEMAVGCGDVGGDMSAL 561
>gi|221139926 NHS-like 1 [Homo sapiens]
Length = 1606
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 21 QDQHAPAAARGGPCGMGPGCSSTSGDLEA 49
Q H AA RGGP PG S +G+ EA
Sbjct: 1147 QGDHGSAAERGGPVSRSPGAPS-AGEAEA 1174
>gi|38569493 potassium voltage-gated channel, subfamily H
(eag-related), member 3 [Homo sapiens]
Length = 1083
Score = 28.1 bits (61), Expect = 1.6
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 27 AAARGGPC----GMGPGCSSTSGDLEALCCSTQLNALVGSRRDGANLLMAW 73
A R GPC G GP +STSG L+ LC T ++ G+ L W
Sbjct: 911 APHREGPCPRASGEGPCPASTSGLLQPLCVDTGASSYCLQPPAGSVLSGTW 961
>gi|229577180 MPN domain containing isoform 2 [Homo sapiens]
Length = 451
Score = 27.7 bits (60), Expect = 2.1
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 3 AGCAGSGKGESDDTLEELQDQHAPAAARGGPCGMGPGCSSTSG 45
AG AG E D+ E +D P A GG G G S + G
Sbjct: 10 AGGAGEEAPEEDEDEAEAEDPERPNAGAGGGRSGGGGSSVSGG 52
>gi|31542699 MPN domain containing isoform 1 [Homo sapiens]
Length = 471
Score = 27.7 bits (60), Expect = 2.1
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 3 AGCAGSGKGESDDTLEELQDQHAPAAARGGPCGMGPGCSSTSG 45
AG AG E D+ E +D P A GG G G S + G
Sbjct: 10 AGGAGEEAPEEDEDEAEAEDPERPNAGAGGGRSGGGGSSVSGG 52
>gi|239754472 PREDICTED: hypothetical protein [Homo sapiens]
Length = 139
Score = 27.7 bits (60), Expect = 2.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 20 LQDQHAPAAARGGPCGMGPG 39
L+ + A A RGGPCG PG
Sbjct: 93 LRGRSAAAGVRGGPCGSRPG 112
>gi|239749029 PREDICTED: hypothetical protein [Homo sapiens]
Length = 139
Score = 27.7 bits (60), Expect = 2.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 20 LQDQHAPAAARGGPCGMGPG 39
L+ + A A RGGPCG PG
Sbjct: 93 LRGRSAAAGVRGGPCGSRPG 112
>gi|239743045 PREDICTED: hypothetical protein XP_002342699 [Homo
sapiens]
Length = 139
Score = 27.7 bits (60), Expect = 2.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 20 LQDQHAPAAARGGPCGMGPG 39
L+ + A A RGGPCG PG
Sbjct: 93 LRGRSAAAGVRGGPCGSRPG 112
>gi|109255251 loricrin [Homo sapiens]
Length = 312
Score = 27.7 bits (60), Expect = 2.1
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 3 AGCAGSGKGESDDTLEELQDQHAPAAARGGPCGMGPGCSSTSGDLEALC 51
+GC SG G + +Q Q + GG G G GC S+ G ++C
Sbjct: 141 SGCFSSGGGGFSG--QAVQCQSYGGVSSGGSSGGGSGCFSSGGGGGSVC 187
>gi|40255016 membrane-associated RING-CH protein IX [Homo sapiens]
Length = 346
Score = 27.7 bits (60), Expect = 2.1
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 26 PAAARGGPCGMGP--GCSSTSGD 46
P RGG CG P GCS+ GD
Sbjct: 30 PRGGRGGGCGWAPFAGCSTRDGD 52
>gi|40805843 K(lysine) acetyltransferase 2B [Homo sapiens]
Length = 832
Score = 27.3 bits (59), Expect = 2.7
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 4 GC-AGSGKGESDDTLEELQDQHAPAAARGGPCGMGPGCSSTSGDLEALCCS 53
GC AG+G G L PA +G PC G S G A+ +
Sbjct: 11 GCGAGAGAGAGPGALPPQPAALPPAPPQGSPCAAAAGGSGACGPATAVAAA 61
>gi|54873613 agrin [Homo sapiens]
Length = 2045
Score = 27.3 bits (59), Expect = 2.7
Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 2 QAGCAGSGKGESDDTLEELQDQHA---PAAARGGPCGMGPGCSSTSG 45
+ G GSG GE D +EL Q + GPC C S G
Sbjct: 668 ECGSGGSGSGEDGDCEQELCRQRGGIWDEDSEDGPCVCDFSCQSVPG 714
>gi|239749044 PREDICTED: hypothetical protein XP_002346891 [Homo
sapiens]
Length = 114
Score = 27.3 bits (59), Expect = 2.7
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 10/53 (18%)
Query: 6 AGSGKGESDDTLEELQDQHAPAAARGGPCGMGPGCSSTSGD--LEALCCSTQL 56
A ES DT EE ++ APA A PG S +GD A CC+ L
Sbjct: 58 AAPATAESPDTPEEPPEEPAPAIA--------PGGSGENGDKASRAACCNPVL 102
>gi|11321640 basic beta 1 syntrophin [Homo sapiens]
Length = 538
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/41 (41%), Positives = 18/41 (43%)
Query: 25 APAAARGGPCGMGPGCSSTSGDLEALCCSTQLNALVGSRRD 65
A AAA GP G G G + SG LE L LV D
Sbjct: 4 AAAAAAAGPAGAGGGRAQRSGLLEVLVRDRWHKVLVNLSED 44
>gi|239744725 PREDICTED: hypothetical protein XP_002343253 [Homo
sapiens]
Length = 756
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/43 (32%), Positives = 16/43 (37%)
Query: 3 AGCAGSGKGESDDTLEELQDQHAPAAARGGPCGMGPGCSSTSG 45
+G G S L + AP A PC GP S SG
Sbjct: 453 SGSLGLALQVSQSALSQRSPHSAPGGATPSPCSTGPRSHSRSG 495
>gi|92859871 SMAD family member 6 isoform 1 [Homo sapiens]
Length = 496
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 2 QAGCAGSGKGESDDTLEELQDQHAPAAARGGPCG 35
+ G G G G+ D +L + + AP A GG CG
Sbjct: 24 EGGSGGGGGGDEDGSLGS-RAEPAPRAREGGGCG 56
>gi|157266269 GATA like protein-1 [Homo sapiens]
Length = 271
Score = 26.9 bits (58), Expect = 3.5
Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 6/58 (10%)
Query: 21 QDQHAPAAARGGPCGMGPGCSSTSGDLEAL------CCSTQLNALVGSRRDGANLLMA 72
+ Q +PA A GGP G + S EAL C TQ L DG L A
Sbjct: 172 RSQESPADAVGGPAAHPGGTEAHSAGSEALEPRRCASCRTQRTPLWRDAEDGTPLCNA 229
>gi|57864582 hornerin [Homo sapiens]
Length = 2850
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 7 GSGKGESDDTLEELQDQHAPAAARGGPCGMGPGCSSTSGDLEA 49
GSG G+S + + ++ GP G G G SS+ G E+
Sbjct: 534 GSGSGQSPSPSRGRHESGSRQSSSYGPHGYGSGRSSSRGPYES 576
Score = 26.6 bits (57), Expect = 4.6
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 4 GCAGSGKGESDDTLEELQDQHAPAAARGGPCGMGPGCSSTSGDLEA 49
G GSG G+S + ++ GP G G G SS+ G E+
Sbjct: 1937 GQHGSGSGQSPSPSRGRHGSGSGQSSSYGPYGSGSGWSSSRGPYES 1982
>gi|169211438 PREDICTED: hypothetical protein [Homo sapiens]
Length = 200
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 5 CAGSGKGESDDTLEELQDQHAPAAARGGPCGMGP 38
CAGS +GE +T EL+ + R P GP
Sbjct: 9 CAGSWRGEGSETRRELELGYRGTPRRPPPLPPGP 42
>gi|169211910 PREDICTED: hypothetical protein [Homo sapiens]
Length = 200
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 5 CAGSGKGESDDTLEELQDQHAPAAARGGPCGMGP 38
CAGS +GE +T EL+ + R P GP
Sbjct: 9 CAGSWRGEGSETRRELELGYRGTPRRPPPLPPGP 42
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.130 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,636,783
Number of Sequences: 37866
Number of extensions: 166468
Number of successful extensions: 529
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 489
Number of HSP's gapped (non-prelim): 51
length of query: 77
length of database: 18,247,518
effective HSP length: 49
effective length of query: 28
effective length of database: 16,392,084
effective search space: 458978352
effective search space used: 458978352
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.