Guide to the Human Genome
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Name: LOC100286936 Sequence: fasta or formatted (139aa) NCBI GI: 239743045
Description:

PREDICTED: hypothetical protein XP_002342699

Not currently referenced in the text

Other entries for this name:
alt mRNA {139aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.4         13           4
 C cysteine            0.7          1           1
 D aspartate           0.7          1           1
 E glutamate           7.2         10           2
 F phenylalanine       5.0          7           2
 G glycine            13.7         19           3
 H histidine           0.7          1           1
 I isoleucine          2.9          4           2
 K lysine              2.2          3           1
 L leucine             7.2         10           2
 M methionine          0.7          1           1
 N asparagine          0.7          1           1
 P proline            10.1         14           2
 Q glutamine           3.6          5           2
 R arginine           18.7         26           4
 S serine             10.1         14           1
 T threonine           2.2          3           1
 V valine              4.3          6           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342699 
LOC100293672          1.000   PREDICTED: hypothetical protein 
LOC100286936          1.000   PREDICTED: hypothetical protein 
LOC100289408          0.059   PREDICTED: hypothetical protein 
LOC100289408          0.059   PREDICTED: hypothetical protein XP_002344217 
C2orf53               0.032   hypothetical protein LOC339779 
LOC651986             0.032   PREDICTED: similar to forkhead box L2 
LOC100133305          0.032   PREDICTED: hypothetical protein 
LOC100288524          0.032   PREDICTED: hypothetical protein XP_002342748 
LOC100133305          0.032   PREDICTED: hypothetical protein 
LOC645139             0.032   PREDICTED: similar to poly(A) binding protein inter...
LOC100291249          0.028   PREDICTED: hypothetical protein XP_002347295 
LOC100292082          0.028   PREDICTED: hypothetical protein XP_002345881 
BAG1                  0.028   BCL2-associated athanogene isoform 1L 
MARCH11               0.028   membrane-associated ring finger (C3HC4) 11 
GDF7                  0.028   growth differentiation factor 7 preproprotein 
MBD6                  0.028   methyl-CpG binding domain protein 6 
LOC100128511          0.024   PREDICTED: hypothetical protein 
LOC100293546          0.024   PREDICTED: hypothetical protein 
LOC100128511          0.024   PREDICTED: hypothetical protein 
LOC100128511          0.024   PREDICTED: hypothetical protein 
LOC100128979          0.024   PREDICTED: hypothetical protein 
LOC100128979          0.024   PREDICTED: hypothetical protein 
LOC100128979          0.024   PREDICTED: hypothetical protein 
AVEN                  0.024   cell death regulator aven 
LOC390595             0.020   PREDICTED: similar to ubiquitin-associated protein ...
LOC100130982          0.020   PREDICTED: hypothetical protein 
LOC645139             0.020   PREDICTED: similar to poly(A) binding protein inter...
LOC100133500          0.020   PREDICTED: hypothetical protein 
LOC390595             0.020   PREDICTED: similar to ubiquitin-associated protein ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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