Guide to the Human Genome
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Name: LOC100293573 Sequence: fasta or formatted (77aa) NCBI GI: 239757934
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.0         10           3
 C cysteine            6.5          5           2
 D aspartate           7.8          6           2
 E glutamate           5.2          4           2
 F phenylalanine       0.0          0           0
 G glycine            16.9         13           2
 H histidine           1.3          1           1
 I isoleucine          0.0          0           0
 K lysine              1.3          1           1
 L leucine            10.4          8           2
 M methionine          3.9          3           1
 N asparagine          2.6          2           1
 P proline             3.9          3           1
 Q glutamine           7.8          6           2
 R arginine            3.9          3           2
 S serine              9.1          7           2
 T threonine           3.9          3           1
 V valine              1.3          1           1
 W tryptophan          1.3          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290236          1.000   PREDICTED: hypothetical protein XP_002348273 
LOC100288658          0.058   PREDICTED: hypothetical protein XP_002342750 
LOC100288658          0.058   PREDICTED: hypothetical protein 
LOC100291624          0.036   PREDICTED: hypothetical protein XP_002345876 
LOC100292753          0.036   PREDICTED: hypothetical protein 
LOC100289712          0.036   PREDICTED: hypothetical protein XP_002346761 
LOC100290856          0.036   PREDICTED: hypothetical protein XP_002347537 
LOC100287455          0.036   PREDICTED: hypothetical protein XP_002342583 
LOC100289061          0.036   PREDICTED: hypothetical protein XP_002342174 
LOC100131773          0.036   PREDICTED: similar to mCG116201 
NHSL1                 0.022   NHS-like 1 
KCNH3                 0.022   potassium voltage-gated channel, subfamily H (eag-re...
MPND                  0.022   MPN domain containing isoform 2 
MPND                  0.022   MPN domain containing isoform 1 
LOC100293672          0.022   PREDICTED: hypothetical protein 
LOC100286936          0.022   PREDICTED: hypothetical protein 
LOC100286936          0.022   PREDICTED: hypothetical protein XP_002342699 
LOR                   0.022   loricrin 
MARCH9                0.022   membrane-associated RING-CH protein IX 
KAT2B                 0.014   K(lysine) acetyltransferase 2B 
AGRN                  0.014   agrin 
LOC100291383          0.014   PREDICTED: hypothetical protein XP_002346891 
SNTB1                 0.014   basic beta 1 syntrophin 
LOC100287812          0.014   PREDICTED: hypothetical protein XP_002343253 
SMAD6                 0.014   SMAD family member 6 isoform 1 
GLP-1                 0.014   GATA like protein-1 
HRNR                  0.014   hornerin 
LOC100128440          0.014   PREDICTED: hypothetical protein 
LOC100128440          0.014   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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