Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239757825
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757825 PREDICTED: hypothetical protein XP_002346350 [Homo
sapiens]
(196 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757825 PREDICTED: hypothetical protein XP_002346350 [Homo ... 404 e-113
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens] 189 1e-48
gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa... 167 7e-42
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap... 167 7e-42
gi|153252068 testes-specific heterogenous nuclear ribonucleoprot... 118 3e-27
gi|223890219 RNA binding motif protein, X-linked-like 3 [Homo sa... 98 4e-21
gi|54633344 RNA binding motif protein, Y-linked, family 1, membe... 62 4e-10
gi|34303937 RNA binding motif protein, Y-linked, family 1, membe... 62 4e-10
gi|56090529 RNA binding motif protein, Y-linked, family 1, membe... 62 4e-10
gi|4826974 RNA binding motif protein, Y-linked, family 1, member... 58 5e-09
gi|56090527 RNA binding motif protein, Y-linked, family 1, membe... 58 5e-09
gi|56090533 RNA binding motif protein, Y-linked, family 1, membe... 58 5e-09
gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting ... 53 1e-07
gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting ... 53 1e-07
gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting ... 53 1e-07
gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting ... 52 3e-07
gi|228008293 synaptotagmin binding, cytoplasmic RNA interacting ... 52 3e-07
gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting ... 52 3e-07
gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3... 51 7e-07
gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1... 51 7e-07
gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4... 51 7e-07
gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2 [... 51 7e-07
gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens] 41 6e-04
gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens] 41 6e-04
gi|100913206 DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Homo sapi... 40 0.001
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 39 0.002
gi|24308265 methyltransferase like 14 [Homo sapiens] 39 0.003
gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens] 39 0.004
gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens] 39 0.004
gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo s... 38 0.006
>gi|239757825 PREDICTED: hypothetical protein XP_002346350 [Homo
sapiens]
Length = 196
Score = 404 bits (1037), Expect = e-113
Identities = 196/196 (100%), Positives = 196/196 (100%)
Query: 1 MSVPECPLKCELRLHSSASSFAVRSSDPAATTGAELLGSPYRRALWSLNPLSLLRLTGKN 60
MSVPECPLKCELRLHSSASSFAVRSSDPAATTGAELLGSPYRRALWSLNPLSLLRLTGKN
Sbjct: 1 MSVPECPLKCELRLHSSASSFAVRSSDPAATTGAELLGSPYRRALWSLNPLSLLRLTGKN 60
Query: 61 KKWDQFAVAVEWEEELLYHVEEIVTEVHLEGNRCPLVESSTYTRAPPSYGGSSRYDDYSS 120
KKWDQFAVAVEWEEELLYHVEEIVTEVHLEGNRCPLVESSTYTRAPPSYGGSSRYDDYSS
Sbjct: 61 KKWDQFAVAVEWEEELLYHVEEIVTEVHLEGNRCPLVESSTYTRAPPSYGGSSRYDDYSS 120
Query: 121 SRDGYGGSRDSYSSSRSDLYSSGRDQVGRQERGLPPSMERGYPPPRDSYSSSSRGTPRGG 180
SRDGYGGSRDSYSSSRSDLYSSGRDQVGRQERGLPPSMERGYPPPRDSYSSSSRGTPRGG
Sbjct: 121 SRDGYGGSRDSYSSSRSDLYSSGRDQVGRQERGLPPSMERGYPPPRDSYSSSSRGTPRGG 180
Query: 181 GRGGSRSDRGGGRSRY 196
GRGGSRSDRGGGRSRY
Sbjct: 181 GRGGSRSDRGGGRSRY 196
>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
Length = 391
Score = 189 bits (480), Expect = 1e-48
Identities = 89/91 (97%), Positives = 90/91 (98%)
Query: 106 PPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDQVGRQERGLPPSMERGYPPP 165
PPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRD+VGRQERGLPPSMERGYPPP
Sbjct: 301 PPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSMERGYPPP 360
Query: 166 RDSYSSSSRGTPRGGGRGGSRSDRGGGRSRY 196
RDSYSSSSRG PRGGGRGGSRSDRGGGRSRY
Sbjct: 361 RDSYSSSSRGAPRGGGRGGSRSDRGGGRSRY 391
Score = 38.5 bits (88), Expect = 0.004
Identities = 35/110 (31%), Positives = 42/110 (38%), Gaps = 13/110 (11%)
Query: 91 GNRCPLVESSTYTRAPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDQVGRQ 150
G R P+ +R SYGG R + S RD Y RD S++ D YSS R
Sbjct: 178 GGRAPV------SRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTK-DSYSSRDYPSSRD 230
Query: 151 ERGLPPS------MERGYPPPRDSYSSSSRGTPRGGGRGGSRSDRGGGRS 194
R P + G+ RD Y S G GR SD G S
Sbjct: 231 TRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGS 280
Score = 28.1 bits (61), Expect = 5.0
Identities = 27/80 (33%), Positives = 32/80 (40%), Gaps = 18/80 (22%)
Query: 103 TRAPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDQVGRQERGLPPSMERGY 162
TR PPS GG YS + + SSSR L +RG PP G
Sbjct: 119 TRGPPSRGGHMDDGGYSMNFN--------MSSSRGPL---------PVKRG-PPPRSGGP 160
Query: 163 PPPRDSYSSSSRGTPRGGGR 182
PP R + S R + GGR
Sbjct: 161 PPKRSAPSGPVRSSSGMGGR 180
>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 167 bits (422), Expect = 7e-42
Identities = 85/99 (85%), Positives = 88/99 (88%), Gaps = 2/99 (2%)
Query: 99 SSTYTRAPP-SYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDQVGRQERGLPPS 157
S+ TR PP SYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSS D+VGRQERGLPPS
Sbjct: 293 SAPLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSC-DRVGRQERGLPPS 351
Query: 158 MERGYPPPRDSYSSSSRGTPRGGGRGGSRSDRGGGRSRY 196
+ERGYP RDSYSSSSRG PRG G GGSRSDRGGGRSRY
Sbjct: 352 VERGYPSSRDSYSSSSRGAPRGAGPGGSRSDRGGGRSRY 390
Score = 42.0 bits (97), Expect = 3e-04
Identities = 37/110 (33%), Positives = 43/110 (39%), Gaps = 13/110 (11%)
Query: 91 GNRCPLVESSTYTRAPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDQVGRQ 150
G R PL +R SYGG R + S RD Y RD S++ D YSS R
Sbjct: 178 GGRAPL------SRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTK-DSYSSRDYPSSRD 230
Query: 151 ERGLPPS------MERGYPPPRDSYSSSSRGTPRGGGRGGSRSDRGGGRS 194
R P + G+ RD Y S G G GR SD G S
Sbjct: 231 TRDYAPPPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGS 280
Score = 35.8 bits (81), Expect = 0.024
Identities = 28/70 (40%), Positives = 32/70 (45%), Gaps = 20/70 (28%)
Query: 135 SRSDLYSSGRDQVGRQ--------ERGLPPSMERGY----PPPRDSYSSSSRGTPRG--G 180
S +D + RD G+ E+ PS ERG PPPR SRG PRG
Sbjct: 58 SPADAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPR------SRGPPRGFGA 111
Query: 181 GRGGSRSDRG 190
GRGGS RG
Sbjct: 112 GRGGSGGTRG 121
Score = 28.1 bits (61), Expect = 5.0
Identities = 31/98 (31%), Positives = 38/98 (38%), Gaps = 13/98 (13%)
Query: 106 PPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDQVG---RQERGLPPSMERGY 162
PP G R + + R G GG+R SR G + RG P ++RG
Sbjct: 99 PPRSRGPPR--GFGAGRGGSGGTRGP--PSRGGHMDDGGYSMNFNMSSSRG-PLPVKRG- 152
Query: 163 PPPRDSYSSSSRGTPRGGGRG----GSRSDRGGGRSRY 196
PPPR S R P G R G R+ GR Y
Sbjct: 153 PPPRSGGPSPKRSAPSGLVRSSSGMGGRAPLSRGRDSY 190
>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 167 bits (422), Expect = 7e-42
Identities = 85/99 (85%), Positives = 88/99 (88%), Gaps = 2/99 (2%)
Query: 99 SSTYTRAPP-SYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDQVGRQERGLPPS 157
S+ TR PP SYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSS D+VGRQERGLPPS
Sbjct: 293 SAPLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSC-DRVGRQERGLPPS 351
Query: 158 MERGYPPPRDSYSSSSRGTPRGGGRGGSRSDRGGGRSRY 196
+ERGYP RDSYSSSSRG PRG G GGSRSDRGGGRSRY
Sbjct: 352 VERGYPSSRDSYSSSSRGAPRGAGPGGSRSDRGGGRSRY 390
Score = 42.0 bits (97), Expect = 3e-04
Identities = 37/110 (33%), Positives = 43/110 (39%), Gaps = 13/110 (11%)
Query: 91 GNRCPLVESSTYTRAPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDQVGRQ 150
G R PL +R SYGG R + S RD Y RD S++ D YSS R
Sbjct: 178 GGRAPL------SRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTK-DSYSSRDYPSSRD 230
Query: 151 ERGLPPS------MERGYPPPRDSYSSSSRGTPRGGGRGGSRSDRGGGRS 194
R P + G+ RD Y S G G GR SD G S
Sbjct: 231 TRDYAPPPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGS 280
Score = 35.8 bits (81), Expect = 0.024
Identities = 28/70 (40%), Positives = 32/70 (45%), Gaps = 20/70 (28%)
Query: 135 SRSDLYSSGRDQVGRQ--------ERGLPPSMERGY----PPPRDSYSSSSRGTPRG--G 180
S +D + RD G+ E+ PS ERG PPPR SRG PRG
Sbjct: 58 SPADAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPR------SRGPPRGFGA 111
Query: 181 GRGGSRSDRG 190
GRGGS RG
Sbjct: 112 GRGGSGGTRG 121
Score = 28.1 bits (61), Expect = 5.0
Identities = 31/98 (31%), Positives = 38/98 (38%), Gaps = 13/98 (13%)
Query: 106 PPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDQVG---RQERGLPPSMERGY 162
PP G R + + R G GG+R SR G + RG P ++RG
Sbjct: 99 PPRSRGPPR--GFGAGRGGSGGTRGP--PSRGGHMDDGGYSMNFNMSSSRG-PLPVKRG- 152
Query: 163 PPPRDSYSSSSRGTPRGGGRG----GSRSDRGGGRSRY 196
PPPR S R P G R G R+ GR Y
Sbjct: 153 PPPRSGGPSPKRSAPSGLVRSSSGMGGRAPLSRGRDSY 190
>gi|153252068 testes-specific heterogenous nuclear ribonucleoprotein
G-T [Homo sapiens]
Length = 392
Score = 118 bits (296), Expect = 3e-27
Identities = 62/94 (65%), Positives = 67/94 (71%), Gaps = 3/94 (3%)
Query: 106 PPSYGGSSRYDDYSS-SRDGYGGSRDSYSSS--RSDLYSSGRDQVGRQERGLPPSMERGY 162
PPSYGG RY++Y S D Y G RDSYSSS RSD YS GR +VGR +RGL SMERG
Sbjct: 299 PPSYGGGGRYEEYRGYSPDAYSGGRDSYSSSYGRSDRYSRGRHRVGRPDRGLSLSMERGC 358
Query: 163 PPPRDSYSSSSRGTPRGGGRGGSRSDRGGGRSRY 196
PP RDSYS S PRGGGR G R +RGGGRSRY
Sbjct: 359 PPQRDSYSRSGCRVPRGGGRLGGRLERGGGRSRY 392
Score = 33.9 bits (76), Expect = 0.091
Identities = 33/101 (32%), Positives = 38/101 (37%), Gaps = 7/101 (6%)
Query: 95 PLVESSTYTRAPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDQVGRQERGL 154
P ESS PP G R+ +R G GG R S S D +
Sbjct: 87 PAFESSRRGPPPPRSRGRPRF--LRGTRGGGGGPRRSPSRGGPDDDGGYTADFDLRPSRA 144
Query: 155 PPSMERGYPPPRDSYSSSSRGTPRGGGRGGSRSDRGGGRSR 195
P M+RG PPPR R P G +RS GG R R
Sbjct: 145 PMPMKRG-PPPRRVGPPPKRAAPS----GPARSSGGGMRGR 180
Score = 33.5 bits (75), Expect = 0.12
Identities = 36/98 (36%), Positives = 40/98 (40%), Gaps = 12/98 (12%)
Query: 104 RAPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDQVGRQERGLPPS------ 157
R Y G R + RD Y G RD SSR D YSS RD R+ RG PS
Sbjct: 185 RGRDGYSGPPRREPLPPRRDPYLGPRDEGYSSR-DGYSS-RDY--REPRGFAPSPGEYTH 240
Query: 158 MERGYPPPRDSYSSSSRGTPRGGGRGGSRSDRGGGRSR 195
+ G+ RD RG G GG D G SR
Sbjct: 241 RDYGHSSVRD--DCPLRGYSDRDGYGGRDRDYGDHLSR 276
>gi|223890219 RNA binding motif protein, X-linked-like 3 [Homo
sapiens]
Length = 1067
Score = 98.2 bits (243), Expect = 4e-21
Identities = 52/91 (57%), Positives = 58/91 (63%), Gaps = 3/91 (3%)
Query: 109 YGGSSRYDDYSSSR-DGYGGSRDSYSSS--RSDLYSSGRDQVGRQERGLPPSMERGYPPP 165
YGG Y++Y S D Y G D S+S RSD YS GRD+VGR +RGLP ME G PP
Sbjct: 977 YGGGGHYEEYQGSLPDAYSGDHDRSSNSYGRSDRYSRGRDRVGRPDRGLPLPMETGSPPL 1036
Query: 166 RDSYSSSSRGTPRGGGRGGSRSDRGGGRSRY 196
DSYS S PRGGGR G R +RG GRSRY
Sbjct: 1037 HDSYSRSGCRVPRGGGRQGGRFERGEGRSRY 1067
Score = 40.8 bits (94), Expect = 7e-04
Identities = 37/109 (33%), Positives = 44/109 (40%), Gaps = 14/109 (12%)
Query: 91 GNRCPLVESSTYTRAPPS--YGGSSRYDDYSS-SRDGYGGSRDSYSSSRSDLYSSGRDQV 147
G R P S + + S YGG RY++Y S D G R + SR SS D
Sbjct: 682 GGRSPDAYSGGHDSSSQSNRYGGGGRYEEYRGHSLDANSGGRSPDTYSRGHDSSSQSDHY 741
Query: 148 GRQERGLPPSMERGYPPPRDSYSSSSRGTPRGGGRGGSRSDRGGGRSRY 196
G R L + P D+YS GG SRS R GG RY
Sbjct: 742 GGGGRSLDANSSGRLP---DAYS--------GGHDSSSRSHRYGGGGRY 779
Score = 39.7 bits (91), Expect = 0.002
Identities = 41/125 (32%), Positives = 49/125 (39%), Gaps = 41/125 (32%)
Query: 106 PPSYGGSSRYDDYSS-----------------------SRD----GYGGSRDSYSS--SR 136
PPSYGG RY++Y SRD Y G R S S+ SR
Sbjct: 320 PPSYGGGCRYEEYQGNSPDACSEGRSSEALPVVLPDAYSRDHSPKAYSGGRSSSSNGYSR 379
Query: 137 SDLYSSGRDQVGRQERGLPPSMERGYPPPRDSYSSSSRGTPRGGG-------RGGSRSDR 189
SD Y G + + RG P G R+S S+S + GG RG S R
Sbjct: 380 SDRY--GEEGCYEEYRGRSPDAHSG---GRNSSSNSYGQSHHYGGEGRYEEYRGRSHEAR 434
Query: 190 GGGRS 194
GGRS
Sbjct: 435 SGGRS 439
Score = 36.6 bits (83), Expect = 0.014
Identities = 43/156 (27%), Positives = 60/156 (38%), Gaps = 27/156 (17%)
Query: 60 NKKW-DQFAVAVEWEEELLYHVEEIVTEVHLEGNRCPLVESSTYTRAPPSYG------GS 112
N W D++ V +EE + ++ G R P S ++ + SYG G
Sbjct: 497 NSSWSDRYGVGGHYEENRGHSLDAN------SGGRSPDTHSGGHSSSSNSYGQSHRYGGE 550
Query: 113 SRYDDYSSSRDGYGG--SRDSY-----SSSRSDLYSSGRDQVGRQERGLPPSMERGYPPP 165
RY+ S D + G S D+Y SSS+S+ Y G + R L + P
Sbjct: 551 GRYEYRGRSHDAHSGGCSADAYSGGHDSSSQSNRYGGGGCYEEYRGRSLDANSGGRSPNA 610
Query: 166 RDSYSSSSRGTPRGGG-------RGGSRSDRGGGRS 194
SS + R GG RG S GGRS
Sbjct: 611 YSGGHDSSSWSHRYGGGGRYEEYRGRSLDANSGGRS 646
Score = 33.5 bits (75), Expect = 0.12
Identities = 33/112 (29%), Positives = 45/112 (40%), Gaps = 13/112 (11%)
Query: 88 HLEGNRCPLVESSTYTRAPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDQV 147
H E R ++ + R+P ++ G + YS RD + S S RSD Y GR
Sbjct: 860 HYEEYRGRSHDTHSRGRSPDAHSGDHYTEAYSRGRDSF-----SNSYGRSDHY--GRGGC 912
Query: 148 GRQERGLPPSMERGYPPPRDSYSSSSRGTPRGGG------RGGSRSDRGGGR 193
+ +G P+ G S +S R GGG RG S GGR
Sbjct: 913 YEEYQGRSPNAYGGGRGLNSSNNSHGRSHRYGGGGRYEEYRGPSPDAHSGGR 964
>gi|54633344 RNA binding motif protein, Y-linked, family 1, member B
[Homo sapiens]
Length = 496
Score = 61.6 bits (148), Expect = 4e-10
Identities = 49/117 (41%), Positives = 65/117 (55%), Gaps = 12/117 (10%)
Query: 88 HLEGN--RCPLVESSTYTRAPP------SYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDL 139
HL G+ R L T APP SYGGS+ + YS++RD YG S +SYSS D
Sbjct: 384 HLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA-YSNTRDRYGRSWESYSSC-GDF 441
Query: 140 YSSGRDQVGRQERGLPPSMERGYPPPRDSYSSSSRGTPRGGGRGGSRSDRGGGRSRY 196
+ R+ V R+++ PPS+ R P PR++Y SSS G G SRS++G SRY
Sbjct: 442 HYCDREHVCRKDQRNPPSLGRVLPDPREAYGSSSYVASIVDG-GESRSEKGDS-SRY 496
Score = 30.0 bits (66), Expect = 1.3
Identities = 31/110 (28%), Positives = 40/110 (36%), Gaps = 7/110 (6%)
Query: 87 VHLEGNRCPLVESSTYTRAPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSG--R 144
+ +E + P +S R P S S S+R GG+R S L G
Sbjct: 78 IKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTRGWLPSQEGHLDDGGYTP 137
Query: 145 DQVGRQERGL-----PPSMERGYPPPRDSYSSSSRGTPRGGGRGGSRSDR 189
D RGL PS G PPP+ S S+ + G G S R
Sbjct: 138 DLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGSQGPMSQR 187
>gi|34303937 RNA binding motif protein, Y-linked, family 1, member F
[Homo sapiens]
Length = 496
Score = 61.6 bits (148), Expect = 4e-10
Identities = 49/117 (41%), Positives = 65/117 (55%), Gaps = 12/117 (10%)
Query: 88 HLEGN--RCPLVESSTYTRAPP------SYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDL 139
HL G+ R L T APP SYGGS+ + YS++RD YG S +SYSS D
Sbjct: 384 HLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA-YSNTRDRYGRSWESYSSC-GDF 441
Query: 140 YSSGRDQVGRQERGLPPSMERGYPPPRDSYSSSSRGTPRGGGRGGSRSDRGGGRSRY 196
+ R+ V R+++ PPS+ R P PR++Y SSS G G SRS++G SRY
Sbjct: 442 HYCDREHVCRKDQRNPPSLGRVLPDPREAYGSSSYVASIVDG-GESRSEKGDS-SRY 496
Score = 29.6 bits (65), Expect = 1.7
Identities = 31/110 (28%), Positives = 40/110 (36%), Gaps = 7/110 (6%)
Query: 87 VHLEGNRCPLVESSTYTRAPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSG--R 144
+ +E + P +S R P S S S+R GG+R S L G
Sbjct: 78 IKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGTRGWLPSHEGHLDDGGYTP 137
Query: 145 DQVGRQERGL-----PPSMERGYPPPRDSYSSSSRGTPRGGGRGGSRSDR 189
D RGL PS G PPP+ S S+ + G G S R
Sbjct: 138 DLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGSQGPMSQR 187
>gi|56090529 RNA binding motif protein, Y-linked, family 1, member J
[Homo sapiens]
Length = 496
Score = 61.6 bits (148), Expect = 4e-10
Identities = 49/117 (41%), Positives = 65/117 (55%), Gaps = 12/117 (10%)
Query: 88 HLEGN--RCPLVESSTYTRAPP------SYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDL 139
HL G+ R L T APP SYGGS+ + YS++RD YG S +SYSS D
Sbjct: 384 HLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA-YSNTRDRYGRSWESYSSC-GDF 441
Query: 140 YSSGRDQVGRQERGLPPSMERGYPPPRDSYSSSSRGTPRGGGRGGSRSDRGGGRSRY 196
+ R+ V R+++ PPS+ R P PR++Y SSS G G SRS++G SRY
Sbjct: 442 HYCDREHVCRKDQRNPPSLGRVLPDPREAYGSSSYVASIVDG-GESRSEKGDS-SRY 496
Score = 29.6 bits (65), Expect = 1.7
Identities = 31/110 (28%), Positives = 40/110 (36%), Gaps = 7/110 (6%)
Query: 87 VHLEGNRCPLVESSTYTRAPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSG--R 144
+ +E + P +S R P S S S+R GG+R S L G
Sbjct: 78 IKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGTRGWLPSHEGHLDDGGYTP 137
Query: 145 DQVGRQERGL-----PPSMERGYPPPRDSYSSSSRGTPRGGGRGGSRSDR 189
D RGL PS G PPP+ S S+ + G G S R
Sbjct: 138 DLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGSQGPMSQR 187
>gi|4826974 RNA binding motif protein, Y-linked, family 1, member A1
[Homo sapiens]
Length = 496
Score = 58.2 bits (139), Expect = 5e-09
Identities = 48/117 (41%), Positives = 64/117 (54%), Gaps = 12/117 (10%)
Query: 88 HLEGN--RCPLVESSTYTRAPP------SYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDL 139
HL G+ R L T APP SYGGS+ + YS++RD YG S +SYSS D
Sbjct: 384 HLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA-YSNTRDRYGRSWESYSSC-GDF 441
Query: 140 YSSGRDQVGRQERGLPPSMERGYPPPRDSYSSSSRGTPRGGGRGGSRSDRGGGRSRY 196
+ R+ V R+++ PPS+ R P PR++ SSS G G SRS++G SRY
Sbjct: 442 HYCDREHVCRKDQRNPPSLGRVLPDPREACGSSSYVASIVDG-GESRSEKGDS-SRY 496
Score = 29.6 bits (65), Expect = 1.7
Identities = 31/110 (28%), Positives = 40/110 (36%), Gaps = 7/110 (6%)
Query: 87 VHLEGNRCPLVESSTYTRAPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSG--R 144
+ +E + P +S R P S S S+R GG+R S L G
Sbjct: 78 IKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTRGWLPSHEGHLDDGGYTP 137
Query: 145 DQVGRQERGL-----PPSMERGYPPPRDSYSSSSRGTPRGGGRGGSRSDR 189
D RGL PS G PPP+ S S+ + G G S R
Sbjct: 138 DLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGSQGPMSQR 187
>gi|56090527 RNA binding motif protein, Y-linked, family 1, member E
[Homo sapiens]
Length = 496
Score = 58.2 bits (139), Expect = 5e-09
Identities = 48/117 (41%), Positives = 64/117 (54%), Gaps = 12/117 (10%)
Query: 88 HLEGN--RCPLVESSTYTRAPP------SYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDL 139
HL G+ R L T APP SYGGS+ + YS++RD YG S +SYSS D
Sbjct: 384 HLSGSSYRDALQRYGTAHGAPPARGPRMSYGGSTCHA-YSNTRDRYGRSWESYSSC-GDF 441
Query: 140 YSSGRDQVGRQERGLPPSMERGYPPPRDSYSSSSRGTPRGGGRGGSRSDRGGGRSRY 196
+ R+ V R+++ PPS+ R P PR++ SSS G G SRS++G SRY
Sbjct: 442 HYCDREHVCRKDQRNPPSLGRVLPDPREACGSSSYVASIVDG-GESRSEKGDS-SRY 496
Score = 30.0 bits (66), Expect = 1.3
Identities = 31/110 (28%), Positives = 40/110 (36%), Gaps = 7/110 (6%)
Query: 87 VHLEGNRCPLVESSTYTRAPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSG--R 144
+ +E + P +S R P S S S+R GG+R S L G
Sbjct: 78 IKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTRGWLPSQEGHLDDGGYTP 137
Query: 145 DQVGRQERGL-----PPSMERGYPPPRDSYSSSSRGTPRGGGRGGSRSDR 189
D RGL PS G PPP+ S S+ + G G S R
Sbjct: 138 DLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGSQGPMSQR 187
>gi|56090533 RNA binding motif protein, Y-linked, family 1, member D
[Homo sapiens]
Length = 496
Score = 58.2 bits (139), Expect = 5e-09
Identities = 48/117 (41%), Positives = 64/117 (54%), Gaps = 12/117 (10%)
Query: 88 HLEGN--RCPLVESSTYTRAPP------SYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDL 139
HL G+ R L T APP SYGGS+ + YS++RD YG S +SYSS D
Sbjct: 384 HLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA-YSNTRDRYGRSWESYSSC-GDF 441
Query: 140 YSSGRDQVGRQERGLPPSMERGYPPPRDSYSSSSRGTPRGGGRGGSRSDRGGGRSRY 196
+ R+ V R+++ PPS+ R P PR++ SSS G G SRS++G SRY
Sbjct: 442 HYCDREHVCRKDQRNPPSLGRVLPDPREACGSSSYVASIVDG-GESRSEKGDS-SRY 496
Score = 30.0 bits (66), Expect = 1.3
Identities = 31/110 (28%), Positives = 40/110 (36%), Gaps = 7/110 (6%)
Query: 87 VHLEGNRCPLVESSTYTRAPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSG--R 144
+ +E + P +S R P S S S+R GG+R S L G
Sbjct: 78 IKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTRGWLPSQEGHLDDGGYTP 137
Query: 145 DQVGRQERGL-----PPSMERGYPPPRDSYSSSSRGTPRGGGRGGSRSDR 189
D RGL PS G PPP+ S S+ + G G S R
Sbjct: 138 DLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGSQGPMSQR 187
>gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 6 [Homo sapiens]
Length = 562
Score = 53.1 bits (126), Expect = 1e-07
Identities = 35/99 (35%), Positives = 41/99 (41%), Gaps = 5/99 (5%)
Query: 102 YTRAPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDQVGRQERGLPPSMERG 161
Y P YG YD Y Y G + D R + GR RG PS RG
Sbjct: 454 YGYPPDYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRG 513
Query: 162 YPPPRDSYSSSSRGTP---RG--GGRGGSRSDRGGGRSR 195
PPR S RG P RG G RGG++ RG G+ +
Sbjct: 514 AAPPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGQGK 552
>gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 3 [Homo sapiens]
Length = 527
Score = 53.1 bits (126), Expect = 1e-07
Identities = 35/99 (35%), Positives = 41/99 (41%), Gaps = 5/99 (5%)
Query: 102 YTRAPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDQVGRQERGLPPSMERG 161
Y P YG YD Y Y G + D R + GR RG PS RG
Sbjct: 419 YGYPPDYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRG 478
Query: 162 YPPPRDSYSSSSRGTP---RG--GGRGGSRSDRGGGRSR 195
PPR S RG P RG G RGG++ RG G+ +
Sbjct: 479 AAPPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGQGK 517
>gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 2 [Homo sapiens]
Length = 464
Score = 53.1 bits (126), Expect = 1e-07
Identities = 35/99 (35%), Positives = 41/99 (41%), Gaps = 5/99 (5%)
Query: 102 YTRAPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDQVGRQERGLPPSMERG 161
Y P YG YD Y Y G + D R + GR RG PS RG
Sbjct: 356 YGYPPDYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRG 415
Query: 162 YPPPRDSYSSSSRGTP---RG--GGRGGSRSDRGGGRSR 195
PPR S RG P RG G RGG++ RG G+ +
Sbjct: 416 AAPPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGQGK 454
>gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 4 [Homo sapiens]
Length = 588
Score = 52.0 bits (123), Expect = 3e-07
Identities = 35/96 (36%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 102 YTRAPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDQVGRQERGLPPSMERG 161
Y P YG YD Y Y G + D R + GR RG PS RG
Sbjct: 419 YGYPPDYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRG 478
Query: 162 YPPPRDSYSSSSRGTP---RG--GGRGGSRSDRGGG 192
PPR S RG P RG G RGG++ RG G
Sbjct: 479 AAPPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRG 514
>gi|228008293 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 5 [Homo sapiens]
Length = 561
Score = 52.0 bits (123), Expect = 3e-07
Identities = 35/96 (36%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 102 YTRAPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDQVGRQERGLPPSMERG 161
Y P YG YD Y Y G + D R + GR RG PS RG
Sbjct: 454 YGYPPDYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRG 513
Query: 162 YPPPRDSYSSSSRGTP---RG--GGRGGSRSDRGGG 192
PPR S RG P RG G RGG++ RG G
Sbjct: 514 AAPPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRG 549
>gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 1 [Homo sapiens]
Length = 623
Score = 52.0 bits (123), Expect = 3e-07
Identities = 35/96 (36%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 102 YTRAPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDQVGRQERGLPPSMERG 161
Y P YG YD Y Y G + D R + GR RG PS RG
Sbjct: 454 YGYPPDYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRG 513
Query: 162 YPPPRDSYSSSSRGTP---RG--GGRGGSRSDRGGG 192
PPR S RG P RG G RGG++ RG G
Sbjct: 514 AAPPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRG 549
>gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3
[Homo sapiens]
Length = 535
Score = 50.8 bits (120), Expect = 7e-07
Identities = 39/93 (41%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 102 YTRAPPSYGGSSRYDDYSSS--RDGYGGSRDSYSSSRSDLYSSGRDQVGRQERGLPPSME 159
Y P YG YDDY D GG D Y GR GR RG PP
Sbjct: 360 YGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGG-GRGGRGAPPPPR 418
Query: 160 -RGYPPPRDSYSSSSRGTPRGGGRGGSRSDRGG 191
RG PPPR S RG P G R GSR RGG
Sbjct: 419 GRGAPPPRGRAGYSQRGAPLGPPR-GSRGGRGG 450
Score = 32.0 bits (71), Expect = 0.35
Identities = 31/91 (34%), Positives = 36/91 (39%), Gaps = 18/91 (19%)
Query: 107 PSYGGSSRYDDYSS--SRDGYGGSRDSYSSSRSDLYSSGRDQVGRQERGLPPSMERGYPP 164
P YG YDD + R G G R + R R + G +RG P RG
Sbjct: 391 PYYG----YDDGYAVRGRGGGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPLGPPRG--- 443
Query: 165 PRDSYSSSSRGTP----RGGGRGGSRSDRGG 191
S RG P RG G GSR +RGG
Sbjct: 444 -----SRGGRGGPAQQQRGRGSRGSRGNRGG 469
>gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1
[Homo sapiens]
Length = 636
Score = 50.8 bits (120), Expect = 7e-07
Identities = 39/93 (41%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 102 YTRAPPSYGGSSRYDDYSSS--RDGYGGSRDSYSSSRSDLYSSGRDQVGRQERGLPPSME 159
Y P YG YDDY D GG D Y GR GR RG PP
Sbjct: 461 YGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGG-GRGGRGAPPPPR 519
Query: 160 -RGYPPPRDSYSSSSRGTPRGGGRGGSRSDRGG 191
RG PPPR S RG P G R GSR RGG
Sbjct: 520 GRGAPPPRGRAGYSQRGAPLGPPR-GSRGGRGG 551
Score = 32.0 bits (71), Expect = 0.35
Identities = 31/91 (34%), Positives = 36/91 (39%), Gaps = 18/91 (19%)
Query: 107 PSYGGSSRYDDYSS--SRDGYGGSRDSYSSSRSDLYSSGRDQVGRQERGLPPSMERGYPP 164
P YG YDD + R G G R + R R + G +RG P RG
Sbjct: 492 PYYG----YDDGYAVRGRGGGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPLGPPRG--- 544
Query: 165 PRDSYSSSSRGTP----RGGGRGGSRSDRGG 191
S RG P RG G GSR +RGG
Sbjct: 545 -----SRGGRGGPAQQQRGRGSRGSRGNRGG 570
>gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4
[Homo sapiens]
Length = 532
Score = 50.8 bits (120), Expect = 7e-07
Identities = 39/93 (41%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 102 YTRAPPSYGGSSRYDDYSSS--RDGYGGSRDSYSSSRSDLYSSGRDQVGRQERGLPPSME 159
Y P YG YDDY D GG D Y GR GR RG PP
Sbjct: 357 YGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGG-GRGGRGAPPPPR 415
Query: 160 -RGYPPPRDSYSSSSRGTPRGGGRGGSRSDRGG 191
RG PPPR S RG P G R GSR RGG
Sbjct: 416 GRGAPPPRGRAGYSQRGAPLGPPR-GSRGGRGG 447
Score = 32.0 bits (71), Expect = 0.35
Identities = 31/91 (34%), Positives = 36/91 (39%), Gaps = 18/91 (19%)
Query: 107 PSYGGSSRYDDYSS--SRDGYGGSRDSYSSSRSDLYSSGRDQVGRQERGLPPSMERGYPP 164
P YG YDD + R G G R + R R + G +RG P RG
Sbjct: 388 PYYG----YDDGYAVRGRGGGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPLGPPRG--- 440
Query: 165 PRDSYSSSSRGTP----RGGGRGGSRSDRGG 191
S RG P RG G GSR +RGG
Sbjct: 441 -----SRGGRGGPAQQQRGRGSRGSRGNRGG 466
>gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2
[Homo sapiens]
Length = 633
Score = 50.8 bits (120), Expect = 7e-07
Identities = 39/93 (41%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 102 YTRAPPSYGGSSRYDDYSSS--RDGYGGSRDSYSSSRSDLYSSGRDQVGRQERGLPPSME 159
Y P YG YDDY D GG D Y GR GR RG PP
Sbjct: 458 YGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGG-GRGGRGAPPPPR 516
Query: 160 -RGYPPPRDSYSSSSRGTPRGGGRGGSRSDRGG 191
RG PPPR S RG P G R GSR RGG
Sbjct: 517 GRGAPPPRGRAGYSQRGAPLGPPR-GSRGGRGG 548
Score = 32.0 bits (71), Expect = 0.35
Identities = 31/91 (34%), Positives = 36/91 (39%), Gaps = 18/91 (19%)
Query: 107 PSYGGSSRYDDYSS--SRDGYGGSRDSYSSSRSDLYSSGRDQVGRQERGLPPSMERGYPP 164
P YG YDD + R G G R + R R + G +RG P RG
Sbjct: 489 PYYG----YDDGYAVRGRGGGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPLGPPRG--- 541
Query: 165 PRDSYSSSSRGTP----RGGGRGGSRSDRGG 191
S RG P RG G GSR +RGG
Sbjct: 542 -----SRGGRGGPAQQQRGRGSRGSRGNRGG 567
>gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]
Length = 589
Score = 41.2 bits (95), Expect = 6e-04
Identities = 33/90 (36%), Positives = 34/90 (37%), Gaps = 16/90 (17%)
Query: 109 YGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDQVGRQERGLPPSMERGYPPPRDS 168
YGG R Y R GYGG R Y R G + RG GY R
Sbjct: 483 YGGD-RGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRG-------GYGGDRG- 533
Query: 169 YSSSSRGTPRGGGRGGSRS------DRGGG 192
S G R GG GG RS DRGGG
Sbjct: 534 -GGSGYGGDRSGGYGGDRSGGGYGGDRGGG 562
Score = 39.7 bits (91), Expect = 0.002
Identities = 34/91 (37%), Positives = 36/91 (39%), Gaps = 11/91 (12%)
Query: 109 YGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDQVGRQERGLPPSMERGYPPPRDS 168
YGG Y R GYGG R Y RS G D+ G G GY R
Sbjct: 498 YGGDR--GGYGGDRGGYGGDRGGYGGDRSR-GGYGGDRGGGS--GYGGDRSGGYGGDR-- 550
Query: 169 YSSSSRGTPRGGGRGGSRSDRG---GGRSRY 196
S G RGGG GG R G GGR+ Y
Sbjct: 551 -SGGGYGGDRGGGYGGDRGGYGGKMGGRNDY 580
Score = 38.5 bits (88), Expect = 0.004
Identities = 34/95 (35%), Positives = 34/95 (35%), Gaps = 11/95 (11%)
Query: 109 YGGSSRY---DDYSSSRDGYGGSRDS--YSSSRSDL--YSSGRDQVG----RQERGLPPS 157
YGG Y R GYGG R Y RS YS R G R G
Sbjct: 396 YGGERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGD 455
Query: 158 MERGYPPPRDSYSSSSRGTPRGGGRGGSRSDRGGG 192
GY R RG GG RGG DRGGG
Sbjct: 456 RGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGG 490
Score = 38.5 bits (88), Expect = 0.004
Identities = 35/98 (35%), Positives = 37/98 (37%), Gaps = 16/98 (16%)
Query: 104 RAPPSYGGS-SRYDDYSSSRDG--YGGSRDS--YSSSRSDLYSSGRDQVGRQERGLPPSM 158
R+ YGG S YS R G YGG R Y R Y R +RG
Sbjct: 419 RSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGDRG----- 473
Query: 159 ERGYPPPRDSYSSSSRGTPRGGGRGGSRSDRGGGRSRY 196
GY R Y G RGGG GG R GG R Y
Sbjct: 474 -GGYGGDRGGY-----GGDRGGGYGGDRGGYGGDRGGY 505
Score = 35.0 bits (79), Expect = 0.041
Identities = 33/100 (33%), Positives = 41/100 (41%), Gaps = 15/100 (15%)
Query: 98 ESSTYTRAPPSYGGSSRYDD----YSSSRDGYGGSRDSYSSSRSDLYSSGRD--QVGRQE 151
+ S Y + SY S YD YS ++ Y R++YS D RD + G
Sbjct: 115 QQSGYDQHQGSYDEQSNYDQQHDSYSQNQQSYHSQRENYSHHTQD---DRRDVSRYGEDN 171
Query: 152 RGLPPSMERGYPPPRDSYSSSSRGTPRGGGRGGSRSDRGG 191
RG S +G R Y RG P G GG DRGG
Sbjct: 172 RGYGGS--QGGGRGRGGYDKDGRG-PMTGSSGG---DRGG 205
Score = 33.1 bits (74), Expect = 0.16
Identities = 30/92 (32%), Positives = 31/92 (33%), Gaps = 6/92 (6%)
Query: 104 RAPPSYGGSSRYDDYSSSRDG-YGGSRDS-YSSSRSDLYSSGRDQVGRQERGLPPSMERG 161
R+ YGG Y R G YGG R Y R Y R G G G
Sbjct: 438 RSGGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGG 497
Query: 162 YPPPRDSYSSSSRGTPRGGGRGG--SRSDRGG 191
Y R Y G GG RGG RGG
Sbjct: 498 YGGDRGGYGGDRGGY--GGDRGGYGGDRSRGG 527
Score = 28.1 bits (61), Expect = 5.0
Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 16/114 (14%)
Query: 98 ESSTYTRAPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLY--SSGRDQVG------- 148
+ S+Y++ P + G + + S S+ G S D + D Y SG DQ
Sbjct: 71 KQSSYSQQPYNNQGQQQNMESSGSQGGRAPSYDQPDYGQQDSYDQQSGYDQHQGSYDEQS 130
Query: 149 --RQERGLPPSMERGYPPPRDSYSSSSRGTPR-----GGGRGGSRSDRGGGRSR 195
Q+ ++ Y R++YS ++ R G G +GGGR R
Sbjct: 131 NYDQQHDSYSQNQQSYHSQRENYSHHTQDDRRDVSRYGEDNRGYGGSQGGGRGR 184
Score = 28.1 bits (61), Expect = 5.0
Identities = 12/18 (66%), Positives = 12/18 (66%)
Query: 178 RGGGRGGSRSDRGGGRSR 195
RGGG GG R RGG R R
Sbjct: 323 RGGGSGGGRRGRGGYRGR 340
Score = 27.3 bits (59), Expect = 8.5
Identities = 20/79 (25%), Positives = 27/79 (34%), Gaps = 2/79 (2%)
Query: 108 SYG--GSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDQVGRQERGLPPSMERGYPPP 165
+YG GS Y S S GYG + DS YSS + G + Y
Sbjct: 19 TYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSYSQSYGGYENQKQSSYSQQ 78
Query: 166 RDSYSSSSRGTPRGGGRGG 184
+ + G +GG
Sbjct: 79 PYNNQGQQQNMESSGSQGG 97
>gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]
Length = 592
Score = 41.2 bits (95), Expect = 6e-04
Identities = 33/90 (36%), Positives = 34/90 (37%), Gaps = 16/90 (17%)
Query: 109 YGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDQVGRQERGLPPSMERGYPPPRDS 168
YGG R Y R GYGG R Y R G + RG GY R
Sbjct: 486 YGGD-RGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRG-------GYGGDRG- 536
Query: 169 YSSSSRGTPRGGGRGGSRS------DRGGG 192
S G R GG GG RS DRGGG
Sbjct: 537 -GGSGYGGDRSGGYGGDRSGGGYGGDRGGG 565
Score = 39.7 bits (91), Expect = 0.002
Identities = 34/91 (37%), Positives = 36/91 (39%), Gaps = 11/91 (12%)
Query: 109 YGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDQVGRQERGLPPSMERGYPPPRDS 168
YGG Y R GYGG R Y RS G D+ G G GY R
Sbjct: 501 YGGDR--GGYGGDRGGYGGDRGGYGGDRSR-GGYGGDRGGGS--GYGGDRSGGYGGDR-- 553
Query: 169 YSSSSRGTPRGGGRGGSRSDRG---GGRSRY 196
S G RGGG GG R G GGR+ Y
Sbjct: 554 -SGGGYGGDRGGGYGGDRGGYGGKMGGRNDY 583
Score = 38.5 bits (88), Expect = 0.004
Identities = 34/95 (35%), Positives = 34/95 (35%), Gaps = 11/95 (11%)
Query: 109 YGGSSRY---DDYSSSRDGYGGSRDS--YSSSRSDL--YSSGRDQVG----RQERGLPPS 157
YGG Y R GYGG R Y RS YS R G R G
Sbjct: 399 YGGERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGD 458
Query: 158 MERGYPPPRDSYSSSSRGTPRGGGRGGSRSDRGGG 192
GY R RG GG RGG DRGGG
Sbjct: 459 RGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGG 493
Score = 38.5 bits (88), Expect = 0.004
Identities = 35/98 (35%), Positives = 37/98 (37%), Gaps = 16/98 (16%)
Query: 104 RAPPSYGGS-SRYDDYSSSRDG--YGGSRDS--YSSSRSDLYSSGRDQVGRQERGLPPSM 158
R+ YGG S YS R G YGG R Y R Y R +RG
Sbjct: 422 RSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGDRG----- 476
Query: 159 ERGYPPPRDSYSSSSRGTPRGGGRGGSRSDRGGGRSRY 196
GY R Y G RGGG GG R GG R Y
Sbjct: 477 -GGYGGDRGGY-----GGDRGGGYGGDRGGYGGDRGGY 508
Score = 35.0 bits (79), Expect = 0.041
Identities = 33/100 (33%), Positives = 41/100 (41%), Gaps = 15/100 (15%)
Query: 98 ESSTYTRAPPSYGGSSRYDD----YSSSRDGYGGSRDSYSSSRSDLYSSGRD--QVGRQE 151
+ S Y + SY S YD YS ++ Y R++YS D RD + G
Sbjct: 118 QQSGYDQHQGSYDEQSNYDQQHDSYSQNQQSYHSQRENYSHHTQD---DRRDVSRYGEDN 174
Query: 152 RGLPPSMERGYPPPRDSYSSSSRGTPRGGGRGGSRSDRGG 191
RG S +G R Y RG P G GG DRGG
Sbjct: 175 RGYGGS--QGGGRGRGGYDKDGRG-PMTGSSGG---DRGG 208
Score = 33.1 bits (74), Expect = 0.16
Identities = 30/92 (32%), Positives = 31/92 (33%), Gaps = 6/92 (6%)
Query: 104 RAPPSYGGSSRYDDYSSSRDG-YGGSRDS-YSSSRSDLYSSGRDQVGRQERGLPPSMERG 161
R+ YGG Y R G YGG R Y R Y R G G G
Sbjct: 441 RSGGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGG 500
Query: 162 YPPPRDSYSSSSRGTPRGGGRGG--SRSDRGG 191
Y R Y G GG RGG RGG
Sbjct: 501 YGGDRGGYGGDRGGY--GGDRGGYGGDRSRGG 530
Score = 28.5 bits (62), Expect = 3.8
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 9/90 (10%)
Query: 108 SYG--GSSRYDDYSSSRDGYGGSRD-SYSSSRSDLYSSGRDQVGRQERGLPPSMERGYPP 164
+YG GS Y S S GYG + D SY + S S G+ Q G + GY
Sbjct: 19 TYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSQSGYSQ------SYGGYEN 72
Query: 165 PRDSYSSSSRGTPRGGGRGGSRSDRGGGRS 194
+ S S +G + S GGR+
Sbjct: 73 QKQSSYSQQPYNNQGQQQNMESSGSQGGRA 102
Score = 28.1 bits (61), Expect = 5.0
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 10/76 (13%)
Query: 108 SYGGS-SRYDDYSSSRDGYGGSRDSYSSSRSDLYS-SGRDQVGRQER--------GLPPS 157
SYG + S Y Y S+ GY S Y + + YS + G+Q+ G PS
Sbjct: 45 SYGQNYSGYSSYGQSQSGYSQSYGGYENQKQSSYSQQPYNNQGQQQNMESSGSQGGRAPS 104
Query: 158 MERGYPPPRDSYSSSS 173
++ +DSY S
Sbjct: 105 YDQPDYGQQDSYDQQS 120
Score = 28.1 bits (61), Expect = 5.0
Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 16/114 (14%)
Query: 98 ESSTYTRAPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLY--SSGRDQVG------- 148
+ S+Y++ P + G + + S S+ G S D + D Y SG DQ
Sbjct: 74 KQSSYSQQPYNNQGQQQNMESSGSQGGRAPSYDQPDYGQQDSYDQQSGYDQHQGSYDEQS 133
Query: 149 --RQERGLPPSMERGYPPPRDSYSSSSRGTPR-----GGGRGGSRSDRGGGRSR 195
Q+ ++ Y R++YS ++ R G G +GGGR R
Sbjct: 134 NYDQQHDSYSQNQQSYHSQRENYSHHTQDDRRDVSRYGEDNRGYGGSQGGGRGR 187
Score = 28.1 bits (61), Expect = 5.0
Identities = 12/18 (66%), Positives = 12/18 (66%)
Query: 178 RGGGRGGSRSDRGGGRSR 195
RGGG GG R RGG R R
Sbjct: 326 RGGGSGGGRRGRGGYRGR 343
>gi|100913206 DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Homo sapiens]
Length = 1270
Score = 40.4 bits (93), Expect = 0.001
Identities = 36/100 (36%), Positives = 42/100 (42%), Gaps = 17/100 (17%)
Query: 100 STYTRAPPSYGGSSRYDDYSSS---RDGYGGSRDSYSSSRSDLYSSGRDQVGRQERGLPP 156
S Y R SY G YSS GYGGS +S+ + Y +G VG RG+
Sbjct: 1171 SGYRRGGSSYSGGGYGGGYSSGGYGSGGYGGSANSFRAG----YGAG---VGGGYRGVSR 1223
Query: 157 SMERGYPPPRDSYSSSSRGTPRGGGRGGSRSDRGGGRSRY 196
RG + RG P GG RG RGGGR Y
Sbjct: 1224 GGFRG------NSGGDYRG-PSGGYRGSGGFQRGGGRGAY 1256
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 39.3 bits (90), Expect = 0.002
Identities = 36/109 (33%), Positives = 44/109 (40%), Gaps = 9/109 (8%)
Query: 90 EGNRCPLVESSTYTRAPPSYG---GSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDQ 146
EG + SS PS G GS + + S R G G R + S D SS +
Sbjct: 285 EGRKTGSQRSSGSRSPSPSGGSGWGSPQRNGGSGQRSGAHGGRPGSAHSPPDKPSSPSPR 344
Query: 147 VGRQERGLPPSMERGYPPPRDSYSSSSRGTPRGGGRGGSRSDRGGGRSR 195
V + P+ PP R S S R P GRGG R+ G GR R
Sbjct: 345 VRDKAAAAAPT-----PPARGKESPSPRSAPSSQGRGG-RAAGGAGRRR 387
>gi|24308265 methyltransferase like 14 [Homo sapiens]
Length = 456
Score = 38.9 bits (89), Expect = 0.003
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 133 SSSRSDLYSSGRDQVGRQERGLPPSMERGYP--PPRDSYSSSSRGTPRGGGRGGSRSDRG 190
S+ ++ Y+S G +ER P PP S S G PRGGGRGG+ + RG
Sbjct: 367 SNYNAETYASYFSAPNSYLTGCTEEIERLRPKSPPPKSKSDRGGGAPRGGGRGGTSAGRG 426
Query: 191 GGRSR 195
R+R
Sbjct: 427 RERNR 431
>gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens]
Length = 330
Score = 38.5 bits (88), Expect = 0.004
Identities = 32/87 (36%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 112 SSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDQV---GRQERGLPPSMERGYPPPRDS 168
SSR SSSR S SSS+S SS R++ G + R S P + S
Sbjct: 214 SSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRS 273
Query: 169 YSSSSRGTPRGGGRGGSRSDRGGGRSR 195
YSSSS R R SRS G R +
Sbjct: 274 YSSSSSSPERNRKRSRSRSSSSGDRKK 300
>gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens]
Length = 320
Score = 38.5 bits (88), Expect = 0.004
Identities = 32/87 (36%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 112 SSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDQV---GRQERGLPPSMERGYPPPRDS 168
SSR SSSR S SSS+S SS R++ G + R S P + S
Sbjct: 214 SSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRS 273
Query: 169 YSSSSRGTPRGGGRGGSRSDRGGGRSR 195
YSSSS R R SRS G R +
Sbjct: 274 YSSSSSSPERNRKRSRSRSSSSGDRKK 300
>gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo
sapiens]
Length = 655
Score = 37.7 bits (86), Expect = 0.006
Identities = 32/94 (34%), Positives = 40/94 (42%), Gaps = 15/94 (15%)
Query: 100 STYTRAPPSYGGSSRY-DDYSSSRDGYGGSRDSYSSSRSDLYSSGRDQVGRQERGLPPSM 158
S Y++ SYG S + D+ SS YG +S + SG D GR G
Sbjct: 252 SQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFSGPGENRSMSGPDNRGRGRGGF---- 307
Query: 159 ERGYPPPRDSYSSSSRGTPRGGGRGGSRSDRGGG 192
+RG SRG RGGGRGG + GG
Sbjct: 308 DRG---------GMSRGG-RGGGRGGMGAGERGG 331
Score = 32.0 bits (71), Expect = 0.35
Identities = 19/41 (46%), Positives = 19/41 (46%), Gaps = 7/41 (17%)
Query: 153 GLPPSMERGYPPPRDSYSSSSRGTPRGGGRGGSRSDRGGGR 193
GLPP RG PPP RG P G G G R GGR
Sbjct: 456 GLPPREGRGMPPP-------LRGGPGGPGGPGGPMGRMGGR 489
Score = 30.4 bits (67), Expect = 1.0
Identities = 19/44 (43%), Positives = 20/44 (45%), Gaps = 11/44 (25%)
Query: 148 GRQERGLPPSMERGYPPPRDSYSSSSRGTPRGGGRGGSRSDRGG 191
G +RG P M RG RG RGG RGG DRGG
Sbjct: 576 GLMDRGGPGGMFRG-----------GRGGDRGGFRGGRGMDRGG 608
Score = 27.7 bits (60), Expect = 6.5
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 149 RQERGLPPSMERGYPPPRDSYSSSSRGTPRGGGRGG--SRSDRG 190
R+ RG+PP + G P R RGG RGG R RG
Sbjct: 460 REGRGMPPPLRGGPGGPGGPGGPMGRMGGRGGDRGGFPPRGPRG 503
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.130 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,395,612
Number of Sequences: 37866
Number of extensions: 495675
Number of successful extensions: 3574
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 188
Number of HSP's that attempted gapping in prelim test: 2685
Number of HSP's gapped (non-prelim): 849
length of query: 196
length of database: 18,247,518
effective HSP length: 97
effective length of query: 99
effective length of database: 14,574,516
effective search space: 1442877084
effective search space used: 1442877084
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.