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Search of human proteins with 239757793
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757793 PREDICTED: hypothetical protein [Homo sapiens]
(172 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757793 PREDICTED: hypothetical protein [Homo sapiens] 370 e-103
gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens] 42 3e-04
gi|57863314 vacuolar protein sorting 37C [Homo sapiens] 38 0.005
gi|157388929 epsin 3 [Homo sapiens] 37 0.006
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ... 37 0.011
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ... 37 0.011
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens] 37 0.011
gi|14993776 skeletal myosin light chain kinase [Homo sapiens] 36 0.014
gi|21389357 MAPK-interacting and spindle-stabilizing protein [Ho... 36 0.014
gi|163965366 nascent polypeptide-associated complex alpha subuni... 36 0.019
gi|194363768 homeobox D9 [Homo sapiens] 35 0.024
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 35 0.024
gi|38016904 thrombospondin repeat containing 1 isoform 1 [Homo s... 35 0.032
gi|56788359 thrombospondin repeat containing 1 isoform 2 [Homo s... 35 0.032
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 35 0.042
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 35 0.042
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 35 0.042
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens] 34 0.055
gi|7706469 Kruppel-like factor [Homo sapiens] 34 0.055
gi|41350201 epsin 1 isoform c [Homo sapiens] 34 0.055
gi|194578898 hypothetical protein LOC100170841 [Homo sapiens] 34 0.055
gi|227430410 POU class 5 homeobox 1B [Homo sapiens] 34 0.071
gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens] 34 0.071
gi|5174607 NGFI-A binding protein 2 [Homo sapiens] 34 0.071
gi|42560248 POU domain, class 5, transcription factor 1 isoform ... 33 0.093
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 33 0.093
gi|169208912 PREDICTED: hypothetical protein [Homo sapiens] 33 0.093
gi|169208667 PREDICTED: hypothetical protein [Homo sapiens] 33 0.093
gi|169207782 PREDICTED: hypothetical protein [Homo sapiens] 33 0.093
gi|169208084 PREDICTED: hypothetical protein [Homo sapiens] 33 0.093
>gi|239757793 PREDICTED: hypothetical protein [Homo sapiens]
Length = 172
Score = 370 bits (951), Expect = e-103
Identities = 172/172 (100%), Positives = 172/172 (100%)
Query: 1 MVHSGTQPPKPTRRAPTPALPPHFRAPGLRVEEGELVSSWQGPYPTAPSGMGARGLGWGD 60
MVHSGTQPPKPTRRAPTPALPPHFRAPGLRVEEGELVSSWQGPYPTAPSGMGARGLGWGD
Sbjct: 1 MVHSGTQPPKPTRRAPTPALPPHFRAPGLRVEEGELVSSWQGPYPTAPSGMGARGLGWGD 60
Query: 61 PEKEGGPSYGTAGEKEWGPPPCPFPRVSGSPQIPLQLGMAGGGRKASGCGMLSHSQSQGL 120
PEKEGGPSYGTAGEKEWGPPPCPFPRVSGSPQIPLQLGMAGGGRKASGCGMLSHSQSQGL
Sbjct: 61 PEKEGGPSYGTAGEKEWGPPPCPFPRVSGSPQIPLQLGMAGGGRKASGCGMLSHSQSQGL 120
Query: 121 VMIRVPNRGCVPVSERLGAGLHCTKYYLASVWEAGTAMLSTGNYQDRDRQTK 172
VMIRVPNRGCVPVSERLGAGLHCTKYYLASVWEAGTAMLSTGNYQDRDRQTK
Sbjct: 121 VMIRVPNRGCVPVSERLGAGLHCTKYYLASVWEAGTAMLSTGNYQDRDRQTK 172
>gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens]
Length = 502
Score = 42.0 bits (97), Expect = 3e-04
Identities = 40/127 (31%), Positives = 45/127 (35%), Gaps = 21/127 (16%)
Query: 4 SGTQPPKPTRRAPTPALPPHFRAPGLRVEEGELVSSWQGPYPTAPSGMGARGLGWGDPEK 63
SG PP P AP P P PG GP P P G G P
Sbjct: 339 SGPLPPVPLGIAPPPPTPRGPPPPGR-----------GGPPPPPPPATGRSGPLPPPPPG 387
Query: 64 EGGPSYGTAGEKEWGPPPCPFPRVSGS----PQIPLQLGMAGGGRKASGCGMLSHSQSQG 119
GGP PPP P P SG+ P +P L AGG G G L QG
Sbjct: 388 AGGPPMPPP------PPPPPPPPSSGNGPAPPPLPPALVPAGGLAPGGGRGALLDQIRQG 441
Query: 120 LVMIRVP 126
+ + + P
Sbjct: 442 IQLNKTP 448
>gi|57863314 vacuolar protein sorting 37C [Homo sapiens]
Length = 355
Score = 37.7 bits (86), Expect = 0.005
Identities = 34/114 (29%), Positives = 41/114 (35%), Gaps = 25/114 (21%)
Query: 8 PPKPTRRAPTPALPPHFRAPGLR-------VEEGELVSSWQGP-YPTAPSG-MGARGLGW 58
PP P +P+P+LP A G V + S GP YP A G GA G W
Sbjct: 201 PPYPLPYSPSPSLPVGPTAHGALPPAPFPVVSQPSFYSGPLGPTYPAAQLGPRGAAGYSW 260
Query: 59 -------------GDPEKEGGPSYGTAGEKEWGP---PPCPFPRVSGSPQIPLQ 96
G P GP Y G + P P+P G P P+Q
Sbjct: 261 SPQRSMPPRPGYPGTPMGASGPGYPLRGGRAPSPGYPQQSPYPATGGKPPYPIQ 314
>gi|157388929 epsin 3 [Homo sapiens]
Length = 632
Score = 37.4 bits (85), Expect = 0.006
Identities = 30/110 (27%), Positives = 40/110 (36%), Gaps = 16/110 (14%)
Query: 6 TQPPKPTRRAPTPA------------LPPHFRAPGLRVEEGELVSSWQGPYPTAPSGMGA 53
TQP K R TP L +AP + ++ P PT P G G
Sbjct: 484 TQPSKEARACRTPESFLGPSASSLVNLDSLVKAPQVAKTRNPFLTGLSAPSPTNPFGAGE 543
Query: 54 RGLGWGDPEKEGGPSYGTAGEKEWGPPPCPFPRVSGSPQIPLQLGMAGGG 103
G + + G P+ G AG GP P ++ S +PL L G
Sbjct: 544 PGRPTLNQMRTGSPALGLAG----GPVGAPLGSMTYSASLPLPLSSVPAG 589
>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
sapiens]
Length = 384
Score = 36.6 bits (83), Expect = 0.011
Identities = 41/122 (33%), Positives = 47/122 (38%), Gaps = 33/122 (27%)
Query: 4 SGTQPPKPT----RRAPTPALPPHFRAPGLRVEEGELVSSWQGPYPTAP-SGMGARGLG- 57
+G QPP T R AP + P FR PGL P + P SG GAR G
Sbjct: 177 AGGQPPPLTCRRCRAAPRRSARP-FRRPGL-------------PLKSRPGSGTGARSCGT 222
Query: 58 WGDPEKEGGPSYGTAGEKEWGPPPCPFPRVSGSPQIPLQLGMAGGGRKASGCGMLSHSQS 117
WG GGP GTA P S P + + GG + GCG S
Sbjct: 223 WGSG---GGP--GTAAASS--------PSADFSSDSPQPIIIFGGALRVRGCGGRRRSNG 269
Query: 118 QG 119
QG
Sbjct: 270 QG 271
>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
sapiens]
Length = 384
Score = 36.6 bits (83), Expect = 0.011
Identities = 41/122 (33%), Positives = 47/122 (38%), Gaps = 33/122 (27%)
Query: 4 SGTQPPKPT----RRAPTPALPPHFRAPGLRVEEGELVSSWQGPYPTAP-SGMGARGLG- 57
+G QPP T R AP + P FR PGL P + P SG GAR G
Sbjct: 177 AGGQPPPLTCRRCRAAPRRSARP-FRRPGL-------------PLKSRPGSGTGARSCGT 222
Query: 58 WGDPEKEGGPSYGTAGEKEWGPPPCPFPRVSGSPQIPLQLGMAGGGRKASGCGMLSHSQS 117
WG GGP GTA P S P + + GG + GCG S
Sbjct: 223 WGSG---GGP--GTAAASS--------PSADFSSDSPQPIIIFGGALRVRGCGGRRRSNG 269
Query: 118 QG 119
QG
Sbjct: 270 QG 271
>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 36.6 bits (83), Expect = 0.011
Identities = 41/122 (33%), Positives = 47/122 (38%), Gaps = 33/122 (27%)
Query: 4 SGTQPPKPT----RRAPTPALPPHFRAPGLRVEEGELVSSWQGPYPTAP-SGMGARGLG- 57
+G QPP T R AP + P FR PGL P + P SG GAR G
Sbjct: 177 AGGQPPPLTCRRCRAAPRRSARP-FRRPGL-------------PLKSRPGSGTGARSCGT 222
Query: 58 WGDPEKEGGPSYGTAGEKEWGPPPCPFPRVSGSPQIPLQLGMAGGGRKASGCGMLSHSQS 117
WG GGP GTA P S P + + GG + GCG S
Sbjct: 223 WGSG---GGP--GTAAASS--------PSADFSSDSPQPIIIFGGALRVRGCGGRRRSNG 269
Query: 118 QG 119
QG
Sbjct: 270 QG 271
>gi|14993776 skeletal myosin light chain kinase [Homo sapiens]
Length = 596
Score = 36.2 bits (82), Expect = 0.014
Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 23/103 (22%)
Query: 8 PPKPTRRAPTPALPPHFRAPGLRVEEGELV---SSWQGPYPTAPSGMGARGLGWGDPEKE 64
PP P + P L +AP +G L +S QGP G G RG
Sbjct: 38 PPDPKKAPDPPTLKKDAKAPASEKGDGTLAQPSTSSQGP-----KGEGDRG--------- 83
Query: 65 GGPSYGTAGEKEWGPPPCPFPRVSGSPQIPLQLGMAGGGRKAS 107
GGP+ G+AG PP P+ + +P+ ++ A G S
Sbjct: 84 GGPAEGSAG------PPAALPQQTATPETSVKKPKAEQGASGS 120
>gi|21389357 MAPK-interacting and spindle-stabilizing protein [Homo
sapiens]
Length = 245
Score = 36.2 bits (82), Expect = 0.014
Identities = 33/111 (29%), Positives = 40/111 (36%), Gaps = 27/111 (24%)
Query: 5 GTQPPKPTRRAPTPALPPHFRAPGLRVEEGELVSSWQGPYPTAPSGMGARGLGW-----G 59
G P PT P P LP + AP G L GP+ + SG A G+G
Sbjct: 111 GPTGPYPTPNMPFPELPRPYGAPTDPAAAGPL-----GPWGSMSSGPWAPGMGGQYPTPN 165
Query: 60 DPEKEGGP----------------SYGTAGEKEWGPPPCPFPRVSGSPQIP 94
P GP +GT WG PP P+P +GS P
Sbjct: 166 MPYPSPGPYPAPPPPQAPGAAPPVPWGTVPPGAWG-PPAPYPAPTGSYPTP 215
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 35.8 bits (81), Expect = 0.019
Identities = 31/88 (35%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 6 TQPPK--PTRRAPTPALPPHFRAPGLRVEEGELVSSWQGPYPTAPSGMGARGLGWGDPEK 63
T PPK PT A TP P +PG +G P T PS G L P
Sbjct: 1303 TSPPKGAPTPPAATPPSPKG--SPGTPPPKGAPTP----PAVTPPSPKGTPTLPATTPSS 1356
Query: 64 EGGPSYGTAGEKEWGPPPCPFPRVSGSP 91
+GGP+ T KE PP P G P
Sbjct: 1357 KGGPT--TPSSKEGPTPPAATPSHKGGP 1382
>gi|194363768 homeobox D9 [Homo sapiens]
Length = 352
Score = 35.4 bits (80), Expect = 0.024
Identities = 34/120 (28%), Positives = 45/120 (37%), Gaps = 12/120 (10%)
Query: 6 TQPPKPTRRAPT--PALPPHFRAPGLRVEEGELVSSWQGPYPTAPSGMGARGLGWGDPEK 63
+QPP + P +PP A E G V SW P P P G G G G G
Sbjct: 84 SQPPAAAAMSGLYHPYVPPPPLAASAS-EPGRYVRSWMEPLPGFPGGAGGGGGGGGGGPG 142
Query: 64 EG---GPSYGTAGEKEWGPPP----CPFPRVSGSPQIPLQLGMAGGGRKASGCGMLSHSQ 116
G GPS G A + +G P P P + S ++ ++ C + SQ
Sbjct: 143 RGPSPGPS-GPANGRHYGIKPETRAAPAPATAASTTSSSSTSLSSSSKRTE-CSVARESQ 200
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 35.4 bits (80), Expect = 0.024
Identities = 36/104 (34%), Positives = 43/104 (41%), Gaps = 10/104 (9%)
Query: 27 PGLRVEEGELVSSWQGPY-PTAPSGMGARGLGWGDPEKEGGPSYGTAGEKEWGPPPCPFP 85
PGLR G + QGP P P G+ GL G+P G P G AGE P P P
Sbjct: 456 PGLRGPSG--IPGLQGPAGPIGPQGLP--GLK-GEPGLPGPPGEGRAGEPGTAGPTGP-P 509
Query: 86 RVSGSPQIPLQLGMAGGGRKASGCGMLSHSQSQGLVMIRVPNRG 129
V GSP I G G G + G+ + +PN G
Sbjct: 510 GVPGSPGITGPPGPPGPPGPPGAPGAFDET---GIAGLHLPNGG 550
>gi|38016904 thrombospondin repeat containing 1 isoform 1 [Homo
sapiens]
Length = 1074
Score = 35.0 bits (79), Expect = 0.032
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 23/100 (23%)
Query: 4 SGTQPPKPT---------RRAPTPALPPH--FRAPGLRVEEGELVSSWQGPYPTAPSGMG 52
SGT+PP PT R +P P P + +P ++ P+P+ P G G
Sbjct: 258 SGTEPPSPTHSLGEGGFFRASPQPRRPSSQGWASP-------QVAGRRPDPFPSVPRGRG 310
Query: 53 ARGLG-WGDPEKEGGPSYGTAGEKEWGPPPCPFPRVSGSP 91
+G G WG GG +G E + P P +S P
Sbjct: 311 QQGQGPWG----TGGTPHGPRLEPDPQHPGAWLPLLSNGP 346
>gi|56788359 thrombospondin repeat containing 1 isoform 2 [Homo
sapiens]
Length = 877
Score = 35.0 bits (79), Expect = 0.032
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 23/100 (23%)
Query: 4 SGTQPPKPT---------RRAPTPALPPH--FRAPGLRVEEGELVSSWQGPYPTAPSGMG 52
SGT+PP PT R +P P P + +P ++ P+P+ P G G
Sbjct: 258 SGTEPPSPTHSLGEGGFFRASPQPRRPSSQGWASP-------QVAGRRPDPFPSVPRGRG 310
Query: 53 ARGLG-WGDPEKEGGPSYGTAGEKEWGPPPCPFPRVSGSP 91
+G G WG GG +G E + P P +S P
Sbjct: 311 QQGQGPWG----TGGTPHGPRLEPDPQHPGAWLPLLSNGP 346
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 34.7 bits (78), Expect = 0.042
Identities = 31/102 (30%), Positives = 40/102 (39%), Gaps = 12/102 (11%)
Query: 4 SGTQPPKPTRRAPTPALPPHFRAPGLRVEEGELVSSWQG--PYPTAPSGMGARGL--GWG 59
+G K ++ AP PA G R E G + P P P G GL G+
Sbjct: 976 AGAPGHKGSKGAPGPA--------GARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAGFD 1027
Query: 60 DPEKEGGPSYGTAGEKEWGPPPCPFPRVSGSPQIPLQLGMAG 101
D E GGP + TA + P P + G P +P G G
Sbjct: 1028 DMEGSGGPFWSTARSADGPQGPPGLPGLKGDPGVPGLPGAKG 1069
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 34.7 bits (78), Expect = 0.042
Identities = 31/102 (30%), Positives = 40/102 (39%), Gaps = 12/102 (11%)
Query: 4 SGTQPPKPTRRAPTPALPPHFRAPGLRVEEGELVSSWQG--PYPTAPSGMGARGL--GWG 59
+G K ++ AP PA G R E G + P P P G GL G+
Sbjct: 561 AGAPGHKGSKGAPGPA--------GARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAGFD 612
Query: 60 DPEKEGGPSYGTAGEKEWGPPPCPFPRVSGSPQIPLQLGMAG 101
D E GGP + TA + P P + G P +P G G
Sbjct: 613 DMEGSGGPFWSTARSADGPQGPPGLPGLKGDPGVPGLPGAKG 654
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 34.7 bits (78), Expect = 0.042
Identities = 31/102 (30%), Positives = 40/102 (39%), Gaps = 12/102 (11%)
Query: 4 SGTQPPKPTRRAPTPALPPHFRAPGLRVEEGELVSSWQG--PYPTAPSGMGARGL--GWG 59
+G K ++ AP PA G R E G + P P P G GL G+
Sbjct: 741 AGAPGHKGSKGAPGPA--------GARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAGFD 792
Query: 60 DPEKEGGPSYGTAGEKEWGPPPCPFPRVSGSPQIPLQLGMAG 101
D E GGP + TA + P P + G P +P G G
Sbjct: 793 DMEGSGGPFWSTARSADGPQGPPGLPGLKGDPGVPGLPGAKG 834
>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
Length = 1192
Score = 34.3 bits (77), Expect = 0.055
Identities = 43/141 (30%), Positives = 53/141 (37%), Gaps = 31/141 (21%)
Query: 4 SGTQPPKPTRRAPTPALP--PHFRAPGLR-----VEEGELVSSWQGPYPT---APSGMGA 53
+GT +P +P PA P P APG R V G +S P P AP+
Sbjct: 83 AGTGGAEPPALSPAPASPARPVSPAPGRRLSLWAVPPGPPLSGGLSPDPKPGGAPTSSRR 142
Query: 54 RGLG---WGDPEKEG------------GPSYGTAGEKEWGPPPCPFPRVSGSPQIPLQLG 98
L WG PE EG P G+ K PPP P P +
Sbjct: 143 PLLSSPSWGGPEPEGRAGGGIPGSSSPHPGTGSRRLKVAPPPPAPKP----CKTVTTSGA 198
Query: 99 MAGGGRKASGCGMLSHSQSQG 119
AGGG+ A LS +S+G
Sbjct: 199 KAGGGKGAG--SRLSWPESEG 217
>gi|7706469 Kruppel-like factor [Homo sapiens]
Length = 355
Score = 34.3 bits (77), Expect = 0.055
Identities = 27/82 (32%), Positives = 30/82 (36%), Gaps = 15/82 (18%)
Query: 8 PPKPTRRAPTPALPPHFRAPGLRVEEGELVSSWQGPYPTAPSGMGARG----------LG 57
PP P P P PP + AP G LVS P AP G G +
Sbjct: 68 PPPPAFYYPEPGAPPPYSAPA-----GGLVSELLRPELDAPLGPALHGRFLLAPPGRLVK 122
Query: 58 WGDPEKEGGPSYGTAGEKEWGP 79
PE +GG YG A GP
Sbjct: 123 AEPPEADGGGGYGCAPGLTRGP 144
>gi|41350201 epsin 1 isoform c [Homo sapiens]
Length = 550
Score = 34.3 bits (77), Expect = 0.055
Identities = 28/89 (31%), Positives = 32/89 (35%), Gaps = 5/89 (5%)
Query: 15 APTPALPPHFRAPGLRVEEGELVSSWQGPYPTAPSGMGARGLGWGDPEKEGGPSYGTAGE 74
APTPA +R G V W G P +G G WG + G P G +
Sbjct: 287 APTPASGDPWRPAA---PAGPSVDPWGGT-PAPAAGEGPTPDPWGSSDG-GVPVSGPSAS 341
Query: 75 KEWGPPPCPFPRVSGSPQIPLQLGMAGGG 103
W P P GSP P G GG
Sbjct: 342 DPWTPAPAFSDPWGGSPAKPSTNGTTAGG 370
Score = 31.6 bits (70), Expect = 0.35
Identities = 34/113 (30%), Positives = 42/113 (37%), Gaps = 24/113 (21%)
Query: 5 GTQPPK--PTRRAPTPALPPHFRAPGLR-VEEGELVSSWQGPYPTAPSGMGARGLGWGDP 61
G+ PP PT PT P F P V+ LVS P PT P + G
Sbjct: 427 GSPPPAATPTPTPPTRKTPESFLGPNAALVDLDSLVSR---PGPTPPGAKASNPFLPG-- 481
Query: 62 EKEGGPSYGTAGEKEWGPPP-----------CPFPRVSGSPQIPLQLGMAGGG 103
GGP+ G + + P P P P V G+P P + GGG
Sbjct: 482 ---GGPATGPSVTNPFQPAPPATLTLNQLRLSPVPPVPGAP--PTYISPLGGG 529
>gi|194578898 hypothetical protein LOC100170841 [Homo sapiens]
Length = 379
Score = 34.3 bits (77), Expect = 0.055
Identities = 26/87 (29%), Positives = 34/87 (39%), Gaps = 5/87 (5%)
Query: 8 PPKPTRRAPTPALPPHFRAPGLRVEEGELVSSWQGPY---PTAPSGMGARGLGWGDPEKE 64
PP P + A P APGL + G S Q P P+ P+G+ G G +
Sbjct: 143 PPHPRESTTSFASAPPRPAPGLEPQRGPAASPPQEPSSRPPSPPAGLSTEPAGPGTAPRP 202
Query: 65 GGPSYGTAGEKEWGPPPCPFPRVSGSP 91
P G E + PPP + SP
Sbjct: 203 FLP--GQPAEVDGNPPPAAPEAPAASP 227
>gi|227430410 POU class 5 homeobox 1B [Homo sapiens]
Length = 359
Score = 33.9 bits (76), Expect = 0.071
Identities = 34/107 (31%), Positives = 41/107 (38%), Gaps = 21/107 (19%)
Query: 34 GELVSSWQGPYPTAPSGMGARGL--GWGDP-------EKEGGPSYGTA---GEKEWGPPP 81
G L S + P G G G GW DP GGP G G + WG PP
Sbjct: 3 GHLASDFAFSPPPGGGGDGPWGAEPGWVDPLTWLSFQGPPGGPGIGPGVGPGSEVWGIPP 62
Query: 82 CPFP-RVSG-----SPQIPLQLGMAGG---GRKASGCGMLSHSQSQG 119
CP P + G PQ+ + L GG + S G+ S S G
Sbjct: 63 CPPPYELCGGMAYCGPQVGVGLVPQGGLETSQPESEAGVGVESNSNG 109
>gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens]
Length = 330
Score = 33.9 bits (76), Expect = 0.071
Identities = 37/130 (28%), Positives = 54/130 (41%), Gaps = 26/130 (20%)
Query: 27 PGLRVEEGEL--------VSSWQGPYPTAPSGMGARGL-GWGDPEKEGGPSYGTAGEKEW 77
P R+++GE ++ G A +G G G G G P GGP+ G G
Sbjct: 36 PASRLQDGEYGLGCLVGGAYTYGGGGSAAATGAGGAGAYGTGGPGGPGGPA-GGGGACSM 94
Query: 78 GPPPCPFPRVSGSPQIPLQL----GMAGGGRKASGCGMLSHSQSQGLVMIRV--PNRGCV 131
GP ++GS + + L G GGG + G G LS + G++ + P G V
Sbjct: 95 GP-------LTGSYNVNMALAGGPGPGGGGGSSGGAGALS---AAGVIRVPAHRPLAGAV 144
Query: 132 PVSERLGAGL 141
+ L GL
Sbjct: 145 AHPQPLATGL 154
>gi|5174607 NGFI-A binding protein 2 [Homo sapiens]
Length = 525
Score = 33.9 bits (76), Expect = 0.071
Identities = 29/88 (32%), Positives = 35/88 (39%), Gaps = 16/88 (18%)
Query: 34 GELVSSWQGPYPTAPSGMGAR------GLGWGDPEKEGGPS-----YGTAGEKEWGPPPC 82
GE S + P +P +G + G G GDP G S G GE+E G PP
Sbjct: 149 GEKAGSARSFSPKSPLELGEKLSPLPGGPGAGDPRIWPGRSTPESDVGAGGEEEAGSPPF 208
Query: 83 PFPRVSGSPQIPLQLGMAGGGRKASGCG 110
P G P+ G GG A G G
Sbjct: 209 SPPAGGGVPE-----GTGAGGLAAGGTG 231
>gi|42560248 POU domain, class 5, transcription factor 1 isoform 1
[Homo sapiens]
Length = 360
Score = 33.5 bits (75), Expect = 0.093
Identities = 23/64 (35%), Positives = 25/64 (39%), Gaps = 12/64 (18%)
Query: 34 GELVSSWQGPYPTAPSGMGARGL--GWGDPEK-------EGGPSYGTA---GEKEWGPPP 81
G L S + P G G G GW DP GGP G G + WG PP
Sbjct: 3 GHLASDFAFSPPPGGGGDGPGGPEPGWVDPRTWLSFQGPPGGPGIGPGVGPGSEVWGIPP 62
Query: 82 CPFP 85
CP P
Sbjct: 63 CPPP 66
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 33.5 bits (75), Expect = 0.093
Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 16/97 (16%)
Query: 5 GTQPPKPTRRAPTPALPPHFRAPGLRVEEGELVSSWQGPYPTAPSGMGARGLGWGDPEKE 64
G Q P+ + P PP G+ + G L + YP P G RG +P +
Sbjct: 314 GRQGPQGEKGEAGPPGPP-----GIVIGTGPLGEKGERGYPGTP---GPRG----EPGPK 361
Query: 65 GGPSYGTAGEKEWGPPPCPFPRVSGSPQIPLQLGMAG 101
G P G G+ GPP P P +G+P P + G G
Sbjct: 362 GFP--GLPGQP--GPPGLPVPGQAGAPGFPGERGEKG 394
Score = 30.4 bits (67), Expect = 0.79
Identities = 26/87 (29%), Positives = 34/87 (39%), Gaps = 13/87 (14%)
Query: 6 TQPPK----PTRRAPTPALPPHFRAPGLRVEEGELVSSWQGPYPTAPSGMGARGLGWGDP 61
T+ PK P + P LP PGL +G +P AP G + GDP
Sbjct: 1231 TEGPKGDRGPQGQPGLPGLPGPMGPPGLPGIDGVKGDKGNPGWPGAPGVPGPK----GDP 1286
Query: 62 EKEGGPSYG-----TAGEKEWGPPPCP 83
+G P G T + + GPP P
Sbjct: 1287 GFQGMPGIGGSPGITGSKGDMGPPGVP 1313
Score = 30.0 bits (66), Expect = 1.0
Identities = 31/111 (27%), Positives = 43/111 (38%), Gaps = 17/111 (15%)
Query: 21 PPHFRAPGLRVEEGELVSSWQG--PYPTAPSGMGARGLGWGDPEKEGGPSY-GTAGEKEW 77
PP PGLR E+G+ QG +P +P G +G G P G P G+ G +
Sbjct: 1054 PPGIGIPGLRGEKGD-----QGIAGFPGSPGEKGEKG-SIGIPGMPGSPGLKGSPGSVGY 1107
Query: 78 -GPPPCP-------FPRVSGSPQIPLQLGMAGGGRKASGCGMLSHSQSQGL 120
G P P P + G P + + G+ G G S G+
Sbjct: 1108 PGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKGEPGSDGI 1158
Score = 28.5 bits (62), Expect = 3.0
Identities = 26/80 (32%), Positives = 32/80 (40%), Gaps = 31/80 (38%)
Query: 43 PYPTAPSGMGARGLGWGDPEKEGGPSYGTAGEKEWGPPPCP------------------- 83
P PT P+G G+P +G P G+AGEK G P P
Sbjct: 1141 PGPTGPAGQK------GEPGSDGIP--GSAGEK--GEPGLPGRGFPGFPGAKGDKGSKGE 1190
Query: 84 --FPRVSGSPQIPLQLGMAG 101
FP ++GSP IP G G
Sbjct: 1191 VGFPGLAGSPGIPGSKGEQG 1210
>gi|169208912 PREDICTED: hypothetical protein [Homo sapiens]
Length = 266
Score = 33.5 bits (75), Expect = 0.093
Identities = 27/102 (26%), Positives = 38/102 (37%), Gaps = 22/102 (21%)
Query: 43 PYPTAPSGMGARGLGWGDPEKEGGPSYGTAGEKEWGPPPCPFPRVSGSPQIPLQLGMAGG 102
P P+G GA G W ++ GP+ G AG PC G A G
Sbjct: 36 PQSPPPAGPGAPGAPWRRGDEGPGPAGGEAG------GPC---------------GAAPG 74
Query: 103 GRKASGCGMLSHSQSQGLVMIRVPNRGC-VPVSERLGAGLHC 143
G + GCG++ S + L + + C VP + C
Sbjct: 75 GCASGGCGVMGVSLTVSLSFLSWSSSRCRVPARSSAASACSC 116
>gi|169208667 PREDICTED: hypothetical protein [Homo sapiens]
Length = 266
Score = 33.5 bits (75), Expect = 0.093
Identities = 27/102 (26%), Positives = 38/102 (37%), Gaps = 22/102 (21%)
Query: 43 PYPTAPSGMGARGLGWGDPEKEGGPSYGTAGEKEWGPPPCPFPRVSGSPQIPLQLGMAGG 102
P P+G GA G W ++ GP+ G AG PC G A G
Sbjct: 36 PQSPPPAGPGAPGAPWRRGDEGPGPAGGEAG------GPC---------------GAAPG 74
Query: 103 GRKASGCGMLSHSQSQGLVMIRVPNRGC-VPVSERLGAGLHC 143
G + GCG++ S + L + + C VP + C
Sbjct: 75 GCASGGCGVMGVSLTVSLSFLSWSSSRCRVPARSSAASACSC 116
>gi|169207782 PREDICTED: hypothetical protein [Homo sapiens]
Length = 330
Score = 33.5 bits (75), Expect = 0.093
Identities = 28/81 (34%), Positives = 30/81 (37%), Gaps = 12/81 (14%)
Query: 5 GTQPPKPTRRAPTPALPPHFRAPGLRVEEGELVSSWQGPYPTAPSGMGARGLGWGDPEKE 64
GT PP R P P P + PG R G S P P G G G G P +
Sbjct: 179 GTDPPG--RTLPAPLARPSTQ-PGRRPGLGRAAS------PLGPRGAGVTGAG---PATQ 226
Query: 65 GGPSYGTAGEKEWGPPPCPFP 85
GG G G PCP P
Sbjct: 227 GGRDRGRWGRWVRRRVPCPLP 247
>gi|169208084 PREDICTED: hypothetical protein [Homo sapiens]
Length = 266
Score = 33.5 bits (75), Expect = 0.093
Identities = 27/102 (26%), Positives = 38/102 (37%), Gaps = 22/102 (21%)
Query: 43 PYPTAPSGMGARGLGWGDPEKEGGPSYGTAGEKEWGPPPCPFPRVSGSPQIPLQLGMAGG 102
P P+G GA G W ++ GP+ G AG PC G A G
Sbjct: 36 PQSPPPAGPGAPGAPWRRGDEGPGPAGGEAG------GPC---------------GAAPG 74
Query: 103 GRKASGCGMLSHSQSQGLVMIRVPNRGC-VPVSERLGAGLHC 143
G + GCG++ S + L + + C VP + C
Sbjct: 75 GCASGGCGVMGVSLTVSLSFLSWSSSRCRVPARSSAASACSC 116
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.136 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,133,005
Number of Sequences: 37866
Number of extensions: 704686
Number of successful extensions: 2803
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 273
Number of HSP's that attempted gapping in prelim test: 2547
Number of HSP's gapped (non-prelim): 517
length of query: 172
length of database: 18,247,518
effective HSP length: 95
effective length of query: 77
effective length of database: 14,650,248
effective search space: 1128069096
effective search space used: 1128069096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.