Guide to the Human Genome
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Name: LOC100293295 Sequence: fasta or formatted (172aa) NCBI GI: 239757793
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         12           1
 C cysteine            2.3          4           1
 D aspartate           1.7          3           1
 E glutamate           5.2          9           2
 F phenylalanine       1.2          2           1
 G glycine            15.7         27           3
 H histidine           2.3          4           1
 I isoleucine          1.2          2           1
 K lysine              3.5          6           1
 L leucine             7.0         12           1
 M methionine          3.5          6           1
 N asparagine          1.2          2           1
 P proline            12.8         22           3
 Q glutamine           4.7          8           1
 R arginine            7.0         12           2
 S serine              8.1         14           2
 T threonine           5.2          9           1
 V valine              5.2          9           1
 W tryptophan          2.3          4           1
 Y tyrosine            2.9          5           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
WAS                   0.049   Wiskott-Aldrich syndrome protein 
VPS37C                0.038   vacuolar protein sorting 37C 
EPN3                  0.035   epsin 3 
LOC100291634          0.035   PREDICTED: hypothetical protein XP_002346062 
LOC100287232          0.035   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.035   PREDICTED: hypothetical protein 
MYLK2                 0.032   skeletal myosin light chain kinase 
MAPK1IP1L             0.032   MAPK-interacting and spindle-stabilizing protein [Ho...
NACA                  0.032   nascent polypeptide-associated complex alpha subuni...
HOXD9                 0.029   homeobox D9 
COL8A2                0.029   collagen, type VIII, alpha 2 
ADAMTSL4              0.029   thrombospondin repeat containing 1 isoform 1 
ADAMTSL4              0.029   thrombospondin repeat containing 1 isoform 2 
COL18A1               0.029   alpha 1 type XVIII collagen isoform 3 precursor [Ho...
COL18A1               0.029   alpha 1 type XVIII collagen isoform 2 precursor [Ho...
COL18A1               0.029   alpha 1 type XVIII collagen isoform 1 precursor [Ho...
AGAP2                 0.026   centaurin, gamma 1 isoform PIKE-L 
KLF2                  0.026   Kruppel-like factor 
EPN1                  0.026   epsin 1 isoform c 
C17orf96              0.026   hypothetical protein LOC100170841 
POU5F1B               0.026   POU class 5 homeobox 1B 
TLX1                  0.026   T-cell leukemia homeobox 1 
NAB2                  0.026   NGFI-A binding protein 2 
POU5F1                0.023   POU domain, class 5, transcription factor 1 isoform ...
COL4A1                0.023   alpha 1 type IV collagen preproprotein 
LOC100128979          0.023   PREDICTED: hypothetical protein 
LOC100128979          0.023   PREDICTED: hypothetical protein 
LOC400236             0.023   PREDICTED: hypothetical protein 
LOC100128979          0.023   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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