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Search of human proteins with 239757591
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757591 PREDICTED: hypothetical protein XP_002345493 [Homo
sapiens]
(598 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757591 PREDICTED: hypothetical protein XP_002345493 [Homo ... 1231 0.0
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens] 42 0.001
gi|12707580 paired-like homeobox 2b [Homo sapiens] 41 0.004
gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [... 41 0.004
gi|13376611 zinc finger protein 703 [Homo sapiens] 39 0.014
gi|169167742 PREDICTED: ankyrin repeat domain 33B [Homo sapiens] 37 0.040
gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens] 37 0.040
gi|239742483 PREDICTED: ankyrin repeat domain 33B [Homo sapiens] 37 0.040
gi|32698984 outer dense fiber of sperm tails 3-like 2 [Homo sapi... 37 0.052
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 36 0.12
gi|239754211 PREDICTED: hypothetical protein XP_002345911 [Homo ... 35 0.20
gi|78000163 sorbin and SH3 domain containing 1 isoform 3 [Homo s... 35 0.20
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens] 35 0.20
gi|189181750 human immunodeficiency virus type I enhancer bindin... 35 0.20
gi|116089331 human immunodeficiency virus type I enhancer bindin... 35 0.20
gi|166795264 AE binding protein 2 isoform b [Homo sapiens] 35 0.20
gi|114431244 von Willebrand factor C and EGF domains [Homo sapiens] 35 0.20
gi|166795262 AE binding protein 2 isoform a [Homo sapiens] 35 0.20
gi|153791755 cyclin domain containing [Homo sapiens] 35 0.26
gi|6912458 calcineurin binding protein 1 [Homo sapiens] 35 0.26
gi|163965366 nascent polypeptide-associated complex alpha subuni... 34 0.34
gi|169217315 PREDICTED: hypothetical protein [Homo sapiens] 34 0.44
gi|113430659 PREDICTED: hypothetical protein [Homo sapiens] 34 0.44
gi|113430177 PREDICTED: hypothetical protein [Homo sapiens] 34 0.44
gi|113430175 PREDICTED: hypothetical protein [Homo sapiens] 34 0.44
gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens] 33 0.57
gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [H... 33 0.57
gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Ho... 33 0.57
gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Hom... 33 0.57
gi|55956910 meningioma 1 [Homo sapiens] 33 0.75
>gi|239757591 PREDICTED: hypothetical protein XP_002345493 [Homo
sapiens]
Length = 598
Score = 1231 bits (3186), Expect = 0.0
Identities = 598/598 (100%), Positives = 598/598 (100%)
Query: 1 MRVPLYASADVHALNIRGAKSTEDVHHRESPFSDMLRRGGMVILLDSGKSFGGQVCSGTR 60
MRVPLYASADVHALNIRGAKSTEDVHHRESPFSDMLRRGGMVILLDSGKSFGGQVCSGTR
Sbjct: 1 MRVPLYASADVHALNIRGAKSTEDVHHRESPFSDMLRRGGMVILLDSGKSFGGQVCSGTR 60
Query: 61 ASPPLNQKETHAKRFGLLELVDKKNKHSFGPETIVGRMETLPWLQLQLRQWLAALRPAAS 120
ASPPLNQKETHAKRFGLLELVDKKNKHSFGPETIVGRMETLPWLQLQLRQWLAALRPAAS
Sbjct: 61 ASPPLNQKETHAKRFGLLELVDKKNKHSFGPETIVGRMETLPWLQLQLRQWLAALRPAAS 120
Query: 121 KRARVLSCLFPLCVRFIHVPLFPQQLQVFEVQDNPKPSPACDCNSATRGPVSVPRTHQRC 180
KRARVLSCLFPLCVRFIHVPLFPQQLQVFEVQDNPKPSPACDCNSATRGPVSVPRTHQRC
Sbjct: 121 KRARVLSCLFPLCVRFIHVPLFPQQLQVFEVQDNPKPSPACDCNSATRGPVSVPRTHQRC 180
Query: 181 AGHSFHHRIKHLLGQAQQRGATVHDGLVCVILEPGEKGKGHDPLKDTTQSGTCLALRLCR 240
AGHSFHHRIKHLLGQAQQRGATVHDGLVCVILEPGEKGKGHDPLKDTTQSGTCLALRLCR
Sbjct: 181 AGHSFHHRIKHLLGQAQQRGATVHDGLVCVILEPGEKGKGHDPLKDTTQSGTCLALRLCR 240
Query: 241 AAVLLLCDTGDYTLTKIWAVTLMACQNMNHCDMTESLTLTWPWRSPDNGQQKLDGVFYLE 300
AAVLLLCDTGDYTLTKIWAVTLMACQNMNHCDMTESLTLTWPWRSPDNGQQKLDGVFYLE
Sbjct: 241 AAVLLLCDTGDYTLTKIWAVTLMACQNMNHCDMTESLTLTWPWRSPDNGQQKLDGVFYLE 300
Query: 301 NHWLLTTPTLPPTSAASRAFAGQMWVFAVLNLGHGRWSFCLSSPWPAKLTSDLPCSRPTV 360
NHWLLTTPTLPPTSAASRAFAGQMWVFAVLNLGHGRWSFCLSSPWPAKLTSDLPCSRPTV
Sbjct: 301 NHWLLTTPTLPPTSAASRAFAGQMWVFAVLNLGHGRWSFCLSSPWPAKLTSDLPCSRPTV 360
Query: 361 ISELSPDLSSLQAVLAARLFLKYITLQKKARIKLSTRLAFLISALKPAEKVQAPAVTGAL 420
ISELSPDLSSLQAVLAARLFLKYITLQKKARIKLSTRLAFLISALKPAEKVQAPAVTGAL
Sbjct: 361 ISELSPDLSSLQAVLAARLFLKYITLQKKARIKLSTRLAFLISALKPAEKVQAPAVTGAL 420
Query: 421 NTVFTPAEDTVRSCVHCPHSPLVEAKVAVYGRRLLPAFLSLPKALAGELTSSETLAHTPQ 480
NTVFTPAEDTVRSCVHCPHSPLVEAKVAVYGRRLLPAFLSLPKALAGELTSSETLAHTPQ
Sbjct: 421 NTVFTPAEDTVRSCVHCPHSPLVEAKVAVYGRRLLPAFLSLPKALAGELTSSETLAHTPQ 480
Query: 481 CAPGGGCRPPRLKSERPRSPAHPSPSAFPALLCGDSCCFGGDAKPRGGVSGQPPPSNEPE 540
CAPGGGCRPPRLKSERPRSPAHPSPSAFPALLCGDSCCFGGDAKPRGGVSGQPPPSNEPE
Sbjct: 481 CAPGGGCRPPRLKSERPRSPAHPSPSAFPALLCGDSCCFGGDAKPRGGVSGQPPPSNEPE 540
Query: 541 KPAAAAGGPYLLRGGPDQHLQEALQVQTKRKVYQGKGEEQAEDAKESCLGSADSSKNL 598
KPAAAAGGPYLLRGGPDQHLQEALQVQTKRKVYQGKGEEQAEDAKESCLGSADSSKNL
Sbjct: 541 KPAAAAGGPYLLRGGPDQHLQEALQVQTKRKVYQGKGEEQAEDAKESCLGSADSSKNL 598
>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
Length = 2817
Score = 42.4 bits (98), Expect = 0.001
Identities = 62/217 (28%), Positives = 81/217 (37%), Gaps = 12/217 (5%)
Query: 342 SSPWPAKLTS-DLPCSRPTVISELSPDLSSLQA-VLAARLFLKYITLQKKARIKLSTRLA 399
S+P PA LT S P S L+P L+S A V A+ L + A + ST A
Sbjct: 1767 SAPLPATLTPVPASTSAPVPASTLAPVLASTSAPVPASPLAPVSASASVSASVPASTSAA 1826
Query: 400 FLISALKPAEKVQAPAVTGALNTVFTPAEDTVRSCVHCPHSPLVEAKVAVYGRRLLPAFL 459
+ S+ PA APA T L +V TPA T+ + P L A + PA
Sbjct: 1827 AITSSSAPAS---APAPTPILASVSTPASVTILASASIP--ILASALASTSAPTPAPAAS 1881
Query: 460 S--LPKALAGELTSSETLAHTPQCAPGGGCRPPRLKSERPRSPAHPSPSAFPALLCGDSC 517
S P A + +S A P AP P + P S +P+P A
Sbjct: 1882 SPAAPVITAPTIPASAPTASVP-LAPASASAP--APAPTPVSAPNPAPPAPAQTQAQTHK 1938
Query: 518 CFGGDAKPRGGVSGQPPPSNEPEKPAAAAGGPYLLRG 554
+ S QPPPS G Y+ G
Sbjct: 1939 PVQNPLQTTSQSSKQPPPSIRLPSAQTPNGTDYVASG 1975
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 40.8 bits (94), Expect = 0.004
Identities = 59/229 (25%), Positives = 82/229 (35%), Gaps = 31/229 (13%)
Query: 350 TSDLPCSRPTVIS--ELSPDLSSLQAVLAARLFLKYITLQKKARIKLSTRLAFLISALKP 407
TS P P S L SS A + +LF + L +K R + R F + LK
Sbjct: 54 TSGCPSLTPGSCSLGTLRDHQSSPYAAVPYKLFTDHGGLNEK-RKQRRIRTTFTSAQLKE 112
Query: 408 AEKVQAPAVTGALNTVFTPAEDTVRSCVHCPHSPLVEAKVAVYGRRLLPAFLSLPKALAG 467
E+V A ++T E ++ L EA+V V+ + F +A A
Sbjct: 113 LERVFAET---HYPDIYTREELALKI-------DLTEARVQVWFQNRRAKFRKQERAAAA 162
Query: 468 ELTSSETLAHTPQCAPGGGCRPPRLKSERPRSPAHPSPSAFPALLCGDSCCFGGDAKPRG 527
+++ + + KS P S P P+ P CG + GG P G
Sbjct: 163 AAAAAKNGSSGKKSDSSRDDESKEAKSTDPDSTGGPGPNPNPTPSCGANGGGGGGPSPAG 222
Query: 528 --GVSGQPPPSNEPEK----------------PAAAAGGPYLLRGGPDQ 558
G +G P EP K AAAA G GGP Q
Sbjct: 223 APGAAGPGGPGGEPGKGGAAAAAAAAAAAAAAAAAAAAGGLAAAGGPGQ 271
>gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [Homo
sapiens]
Length = 1636
Score = 40.8 bits (94), Expect = 0.004
Identities = 39/146 (26%), Positives = 57/146 (39%), Gaps = 13/146 (8%)
Query: 438 PHSPLVEA---KVAVYGRRLLPAFLSLPKALAGELTSSETLAHTPQCAPGGGCRPPRLKS 494
PH PL G + P + P + AG+ T S L +P +PG G PPR +
Sbjct: 1045 PHPPLAYGPAPSTRPMGPQAAPLTIRGPSS-AGQSTPSPHLVPSPAPSPGPGPVPPRPPA 1103
Query: 495 ERPRSPAHPSPSAFPALLCGDSCCFGGDAKPRGGVSGQPPPSNEPEKPAAAAG----GPY 550
P +A L GG P GG P +P K AA G
Sbjct: 1104 AEPPPCLRRGAAAADLLSSSPESQHGGTQSPGGG-----QPLLQPTKVDAAEGRRPQALR 1158
Query: 551 LLRGGPDQHLQEALQVQTKRKVYQGK 576
L+ P +H + Q+Q + + ++G+
Sbjct: 1159 LIERDPYEHPERLRQLQQELEAFRGQ 1184
>gi|13376611 zinc finger protein 703 [Homo sapiens]
Length = 590
Score = 38.9 bits (89), Expect = 0.014
Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 6/121 (4%)
Query: 441 PLVEAKVAVYGRRLLPAFLSLPKALAGELTSSETLAHTPQCAPGGGCRPPRLKSERPRSP 500
PL + + +G ++ A+ P L S++ Q + G G P + S P +
Sbjct: 307 PLPPSSIGYHGS-IVGAYAGYPSQFVPGLDPSKSGLVGGQLSGGLGLPPGKPPSSSPLTG 365
Query: 501 AHPSPSAFPALLCGDSCCFGG--DAKPRGGVSGQPPPSNEPEKPAAAAGG-PYLLRGGPD 557
A SP +F LC D C GG A GG S +++P P+ AGG P + G P
Sbjct: 366 A--SPPSFLQGLCRDPYCLGGYHGASHLGGSSCSTCSAHDPAGPSLKAGGYPLVYPGHPL 423
Query: 558 Q 558
Q
Sbjct: 424 Q 424
>gi|169167742 PREDICTED: ankyrin repeat domain 33B [Homo sapiens]
Length = 494
Score = 37.4 bits (85), Expect = 0.040
Identities = 57/206 (27%), Positives = 86/206 (41%), Gaps = 28/206 (13%)
Query: 401 LISALKPAEKVQAPAVTGALN-------TVFTPAEDTVRSCVHCPHSPLVEAKVAVYGRR 453
++S L P V+ P G L+ ++++PA V V CP SP K + +
Sbjct: 287 VLSVLTP-RSVRGPEDGGVLDHMVRMTTSLYSPAVAIVCQTV-CPESPPSVGKRRLAVQE 344
Query: 454 LLPAFLSL-PKAL-------AGEL-TSSETLAHTPQCAPGGGCRPPRLKSERPRSPAHPS 504
+L A + P+A AG+ + + A + + +P G PP L S P +PA
Sbjct: 345 ILAARAARGPQAQEEDEVGGAGQRGRTGQEDADSREGSPRAGL-PPALGSRGPAAPAPRK 403
Query: 505 PSAFPALLCGDSCCFGGDAKPRGGVSGQPPPSNEPEKPAAAA----GGPYLLRGGPDQHL 560
S P G PR VS P P+ +PE+PA G + P
Sbjct: 404 ASLLPLQRLRRRSVRPGVVVPRVRVSKAPAPTFQPERPARKGSTKDSGHLQI---PKWRY 460
Query: 561 QEALQVQTKRKVYQGKGEEQAEDAKE 586
+EA + KRK + + + QAE KE
Sbjct: 461 KEA--KEEKRKAEEAEKKRQAEAQKE 484
>gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens]
Length = 1006
Score = 37.4 bits (85), Expect = 0.040
Identities = 57/206 (27%), Positives = 86/206 (41%), Gaps = 28/206 (13%)
Query: 401 LISALKPAEKVQAPAVTGALN-------TVFTPAEDTVRSCVHCPHSPLVEAKVAVYGRR 453
++S L P V+ P G L+ ++++PA V V CP SP K + +
Sbjct: 799 VLSVLTP-RSVRGPEDGGVLDHMVRMTTSLYSPAVAIVCQTV-CPESPPSVGKRRLAVQE 856
Query: 454 LLPAFLSL-PKAL-------AGEL-TSSETLAHTPQCAPGGGCRPPRLKSERPRSPAHPS 504
+L A + P+A AG+ + + A + + +P G PP L S P +PA
Sbjct: 857 ILAARAARGPQAQEEDEVGGAGQRGRTGQEDADSREGSPRAGL-PPALGSRGPAAPAPRK 915
Query: 505 PSAFPALLCGDSCCFGGDAKPRGGVSGQPPPSNEPEKPAAAA----GGPYLLRGGPDQHL 560
S P G PR VS P P+ +PE+PA G + P
Sbjct: 916 ASLLPLQRLRRRSVRPGVVVPRVRVSKAPAPTFQPERPARKGSTKDSGHLQI---PKWRY 972
Query: 561 QEALQVQTKRKVYQGKGEEQAEDAKE 586
+EA + KRK + + + QAE KE
Sbjct: 973 KEA--KEEKRKAEEAEKKRQAEAQKE 996
>gi|239742483 PREDICTED: ankyrin repeat domain 33B [Homo sapiens]
Length = 494
Score = 37.4 bits (85), Expect = 0.040
Identities = 57/206 (27%), Positives = 86/206 (41%), Gaps = 28/206 (13%)
Query: 401 LISALKPAEKVQAPAVTGALN-------TVFTPAEDTVRSCVHCPHSPLVEAKVAVYGRR 453
++S L P V+ P G L+ ++++PA V V CP SP K + +
Sbjct: 287 VLSVLTP-RSVRGPEDGGVLDHMVRMTTSLYSPAVAIVCQTV-CPESPPSVGKRRLAVQE 344
Query: 454 LLPAFLSL-PKAL-------AGEL-TSSETLAHTPQCAPGGGCRPPRLKSERPRSPAHPS 504
+L A + P+A AG+ + + A + + +P G PP L S P +PA
Sbjct: 345 ILAARAARGPQAQEEDEVGGAGQRGRTGQEDADSREGSPRAGL-PPALGSRGPAAPAPRK 403
Query: 505 PSAFPALLCGDSCCFGGDAKPRGGVSGQPPPSNEPEKPAAAA----GGPYLLRGGPDQHL 560
S P G PR VS P P+ +PE+PA G + P
Sbjct: 404 ASLLPLQRLRRRSVRPGVVVPRVRVSKAPAPTFQPERPARKGSTKDSGHLQI---PKWRY 460
Query: 561 QEALQVQTKRKVYQGKGEEQAEDAKE 586
+EA + KRK + + + QAE KE
Sbjct: 461 KEA--KEEKRKAEEAEKKRQAEAQKE 484
>gi|32698984 outer dense fiber of sperm tails 3-like 2 [Homo
sapiens]
Length = 289
Score = 37.0 bits (84), Expect = 0.052
Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 20/149 (13%)
Query: 410 KVQAPAVTGALNTVFTPAEDTVRSCVHCPHSPLVEAKVAVYGRRLLPAFLSLPKALA-GE 468
+V +PA + P +DT ++ ++ KV +GR PA+ +A + G
Sbjct: 64 RVASPAYSLVRRPSEAPPQDTSPGPIY-----FLDPKVTRFGRSCTPAYSMQGRAKSRGP 118
Query: 469 LTSSETLAHTPQCAPGG----------GCRPPRLKSERPRSPAHPSPSAFPALLCGDSCC 518
+ A++P+ P GCR P +P + P+P+A+ S
Sbjct: 119 EVTPGPGAYSPEKVPPVRHRTPPAFTLGCRLPL----KPLDTSAPAPNAYTMPPLWGSQI 174
Query: 519 FGGDAKPRGGVSGQPPPSNEPEKPAAAAG 547
F + P V G+ PP+ P+ PA G
Sbjct: 175 FTKPSSPSYTVVGRTPPARPPQDPAEIPG 203
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 35.8 bits (81), Expect = 0.12
Identities = 27/90 (30%), Positives = 34/90 (37%), Gaps = 11/90 (12%)
Query: 470 TSSETLAHTPQCAPGGGCRPPRLKSERPRSPAH----------PSPSAFPALLCGDSCCF 519
+S +A P APG G PP S P +P P+P+ PA+
Sbjct: 106 SSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGA- 164
Query: 520 GGDAKPRGGVSGQPPPSNEPEKPAAAAGGP 549
P GV PP + P P AA GP
Sbjct: 165 PPPTPPSSGVPTTPPQAGGPPPPPAAVPGP 194
>gi|239754211 PREDICTED: hypothetical protein XP_002345911 [Homo
sapiens]
Length = 131
Score = 35.0 bits (79), Expect = 0.20
Identities = 29/87 (33%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 452 RRLLPAFLSLPKALAGELTSSETLAHTPQCAPGGGCRPPRLKSERPRSPAHPS-PSAFPA 510
RR P S + G + + A P PG C P S P SP HP+ PSA PA
Sbjct: 44 RRNTPRPPSTATMVTGRVAAGSAHALRPSAVPGPLC-PEATPSAPPTSPLHPAPPSARPA 102
Query: 511 LLCGDSCCFG-GDAKPRGGVSGQPPPS 536
+ CF GD G + PP+
Sbjct: 103 PKPRPAGCFPMGDRNSARGFAVLEPPA 129
>gi|78000163 sorbin and SH3 domain containing 1 isoform 3 [Homo
sapiens]
Length = 1292
Score = 35.0 bits (79), Expect = 0.20
Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 8/138 (5%)
Query: 381 LKYITLQKKARIKLSTRLAFLISALKPAEKVQAPAVTGALNTVFTPAEDTVRSC------ 434
+ Y+ + K+ +K L + P+ A + + + TPA ++
Sbjct: 920 ITYVDVIKRPLVKNPVDYMDLPFSSSPSRSATASPQFSSHSKLITPAPSSLPHSRRALSP 979
Query: 435 -VHCPHSPLVEAKVAVYGRRLLPAFLSLPKALAGELTSSETLAHTPQCAPGGGCRPPRLK 493
+H S + V V GRR L LP + +++ LA +P+ +P P L
Sbjct: 980 EMHAVTSEWISLTVGVPGRRSLALTPPLPPLPEASIYNTDHLALSPRASPSLSLSLPHLS 1039
Query: 494 -SERPRSPAHPSPSAFPA 510
S+RP + SP A P+
Sbjct: 1040 WSDRPTPRSVASPLALPS 1057
>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
Length = 1006
Score = 35.0 bits (79), Expect = 0.20
Identities = 35/107 (32%), Positives = 43/107 (40%), Gaps = 30/107 (28%)
Query: 456 PAFLSLPKA----------LAGELTSSETLAH-----TPQCAPGGGCRPPRLKSERPRSP 500
P L LP A + G+L LAH P PG R P ++R SP
Sbjct: 846 PGALGLPAAACPYCPPNGPVRGDLLEHFRLAHGLLLGAPLAGPGVEARTP---ADRGPSP 902
Query: 501 AHPSPSAFPALLCGDSCCFGGDAKPRGGVSGQP--PPSNEPEKPAAA 545
A P+P+A P G PR G+ +P PP P PAAA
Sbjct: 903 A-PAPAASPQ---------PGSRGPRDGLGPEPQEPPPGPPPSPAAA 939
>gi|189181750 human immunodeficiency virus type I enhancer binding
protein 3 b [Homo sapiens]
Length = 2405
Score = 35.0 bits (79), Expect = 0.20
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 470 TSSETLAHTPQCAPGGGCRPPRLKSERPRSPAHPSPSAFPALLCGDSCCFGGDAKPR--- 526
T +TL PQ PRL+S PR+P +P PSA P L S +A R
Sbjct: 2309 TPPDTLPRPPQGRRAAQSWSPRLES--PRAPTNPEPSATPPLDRSSSVGCLAEASARFPA 2366
Query: 527 --GGVSGQPPPSNEPEKPAAA 545
+SG+P + KP+ +
Sbjct: 2367 RTRNLSGEPRTRQDSPKPSGS 2387
>gi|116089331 human immunodeficiency virus type I enhancer binding
protein 3 [Homo sapiens]
Length = 2406
Score = 35.0 bits (79), Expect = 0.20
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 470 TSSETLAHTPQCAPGGGCRPPRLKSERPRSPAHPSPSAFPALLCGDSCCFGGDAKPR--- 526
T +TL PQ PRL+S PR+P +P PSA P L S +A R
Sbjct: 2310 TPPDTLPRPPQGRRAAQSWSPRLES--PRAPTNPEPSATPPLDRSSSVGCLAEASARFPA 2367
Query: 527 --GGVSGQPPPSNEPEKPAAA 545
+SG+P + KP+ +
Sbjct: 2368 RTRNLSGEPRTRQDSPKPSGS 2388
>gi|166795264 AE binding protein 2 isoform b [Homo sapiens]
Length = 517
Score = 35.0 bits (79), Expect = 0.20
Identities = 33/134 (24%), Positives = 50/134 (37%), Gaps = 13/134 (9%)
Query: 468 ELTSSETLAHTPQCAPGGGCR----PPRLKSERPRSPAHPSPSAFPALLCGDSCCFGGDA 523
+L L+ P +PG R PP + E A ALL GG
Sbjct: 10 DLEELSRLSPLPPGSPGSAARGRAEPPEEEEEEEEEEEEAEAEAVAALLLNGGSGGGGGG 69
Query: 524 KPRGGVSGQPPPSNEPEKPAAAAGGPYLLRGGPDQHLQEALQVQTKRKVYQGKGEEQAED 583
G G+ +EP +A+ + G D+ +E + + G GEE E
Sbjct: 70 GGGGVGGGEAETMSEPSPESAS-------QAGEDEDEEEDDEEEEDESSSSGGGEE--ES 120
Query: 584 AKESCLGSADSSKN 597
+ ES +GS+ S +
Sbjct: 121 SAESLVGSSGGSSS 134
>gi|114431244 von Willebrand factor C and EGF domains [Homo sapiens]
Length = 955
Score = 35.0 bits (79), Expect = 0.20
Identities = 49/168 (29%), Positives = 63/168 (37%), Gaps = 23/168 (13%)
Query: 433 SCVHCPHSPLVEAKVAVYGRRLLPAFLSLPKALAGELTSSETLAHTPQCAPG--GGCRPP 490
SC P + L + + + L LP+A L+ + P APG G R
Sbjct: 260 SCEAFPKAVLAPSAILQPRQHPSKMLLLLPEAGRPALSPGHS---PPSGAPGPPAGVRTT 316
Query: 491 RLKSERPRSPAHPSPSAFPALLCG------DSCCFGGDAKP----RGGVSGQPPPSNEPE 540
RL S PR P SPSA LL + G+ +P +G V G P PE
Sbjct: 317 RLPSPTPRLPTS-SPSAPVWLLSTLLATPVPTASLLGNLRPPSLLQGEVMGTPSSPRGPE 375
Query: 541 KPAAAAGGPYLLRGGPDQHLQEALQVQTKRKVYQGKGEEQAEDAKESC 588
P AAG P HL A+ R G + ED K +C
Sbjct: 376 SPRLAAG------PSPCWHL-GAMHESRSRWTEPGCSQCWCEDGKVTC 416
Score = 30.0 bits (66), Expect = 6.3
Identities = 39/160 (24%), Positives = 54/160 (33%), Gaps = 22/160 (13%)
Query: 404 ALKPAEKVQAPAVTGALNTVFTPAEDTVR-------SCVHCPHSPLVEAKVAVYGRRLLP 456
+L P E+ Q + G N F+ A ++ +C CP P P
Sbjct: 745 SLSPLEEKQGLSPHG--NVAFSKAGRSLHGDTEAPVNCSSCPGPPTASPS--------RP 794
Query: 457 AFLSLPKALAGELTSSETLAHTPQCAPGGGCRPPRLKSERPRSPAHPSPSAFPALLCGDS 516
L L L ++TL +P A G L + P P A P L G S
Sbjct: 795 VLHLLQLLLRTNLMKTQTLPTSPAGAHGPHSLALGLTATFPGEPG-----ASPRLSPGPS 849
Query: 517 CCFGGDAKPRGGVSGQPPPSNEPEKPAAAAGGPYLLRGGP 556
G P PP PE+ +A+G + R P
Sbjct: 850 TPPGAPTLPLASPGAPQPPPVTPERSFSASGAQIVSRWPP 889
>gi|166795262 AE binding protein 2 isoform a [Homo sapiens]
Length = 503
Score = 35.0 bits (79), Expect = 0.20
Identities = 33/134 (24%), Positives = 50/134 (37%), Gaps = 13/134 (9%)
Query: 468 ELTSSETLAHTPQCAPGGGCR----PPRLKSERPRSPAHPSPSAFPALLCGDSCCFGGDA 523
+L L+ P +PG R PP + E A ALL GG
Sbjct: 10 DLEELSRLSPLPPGSPGSAARGRAEPPEEEEEEEEEEEEAEAEAVAALLLNGGSGGGGGG 69
Query: 524 KPRGGVSGQPPPSNEPEKPAAAAGGPYLLRGGPDQHLQEALQVQTKRKVYQGKGEEQAED 583
G G+ +EP +A+ + G D+ +E + + G GEE E
Sbjct: 70 GGGGVGGGEAETMSEPSPESAS-------QAGEDEDEEEDDEEEEDESSSSGGGEE--ES 120
Query: 584 AKESCLGSADSSKN 597
+ ES +GS+ S +
Sbjct: 121 SAESLVGSSGGSSS 134
>gi|153791755 cyclin domain containing [Homo sapiens]
Length = 350
Score = 34.7 bits (78), Expect = 0.26
Identities = 38/115 (33%), Positives = 48/115 (41%), Gaps = 21/115 (18%)
Query: 456 PAFLSLPKALAGELTSSETLAHTPQCAPGGGCRPPRLKSERPRSPAHPSPSAFPALLCGD 515
P S P A AG + + L AP R PRL+ ++P P +P P L GD
Sbjct: 6 PTSPSSPAARAGRRDNDQNLR-----APVKKSRRPRLRRKQPLHPLNPCP------LPGD 54
Query: 516 SCCFGGDAKPRGGVSGQPPPSNEPEKPAAAAGGPYLLRGGPDQHLQEALQVQTKR 570
S P G G E P+AA GG L GP Q + + L +QT R
Sbjct: 55 SGICDLFESPSSGSDG-------AESPSAARGGSPL--PGPAQPVAQ-LDLQTFR 99
>gi|6912458 calcineurin binding protein 1 [Homo sapiens]
Length = 2220
Score = 34.7 bits (78), Expect = 0.26
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 479 PQCAPGGGCRP-PRLKSERPRSPAHPSPSAFPALLCGDSCCFGGDAKPRGGVSGQPPPSN 537
P C+ G RP PR E + + P + P G A+P G G+P PS
Sbjct: 2064 PTCSQEGKLRPEPRRDGEAQEAASETQPLSSPPTAASSKAPSSGSAQPPEGHPGKPEPSR 2123
Query: 538 EPEKP 542
+P
Sbjct: 2124 AKSRP 2128
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 34.3 bits (77), Expect = 0.34
Identities = 30/106 (28%), Positives = 36/106 (33%), Gaps = 6/106 (5%)
Query: 456 PAFLSLPKALAGELTSSETLAHTPQCAP-----GGGCRPPRLKSERPRSPAHPSPSAFPA 510
PA ++ P G TS A TP A G PP + P + PSP P
Sbjct: 1289 PAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPT 1348
Query: 511 LLCGDSCCFGGDAKPRGGVSGQPPPSNEPEKPAAAAGGPYLLRGGP 556
L GG P G PP+ P A P + GP
Sbjct: 1349 LPATTPSSKGGPTTP-SSKEGPTPPAATPSHKGGPAMTPPSPKRGP 1393
Score = 33.9 bits (76), Expect = 0.44
Identities = 24/76 (31%), Positives = 25/76 (32%), Gaps = 2/76 (2%)
Query: 476 AHTPQCAPGGGCRPPRLKSERPRSPAHPSPSAFPALLCGDSCCFGGDAKPRG--GVSGQP 533
A TP GG PP + P PSP PA A P G G P
Sbjct: 1268 AATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTP 1327
Query: 534 PPSNEPEKPAAAAGGP 549
PP P PA P
Sbjct: 1328 PPKGAPTPPAVTPPSP 1343
Score = 33.5 bits (75), Expect = 0.57
Identities = 47/156 (30%), Positives = 56/156 (35%), Gaps = 19/156 (12%)
Query: 404 ALKPAEKVQAPAVTGALNTVFTPAEDTVRSCVHCPHS-PLVEAKVAVYGRRLLPAFLSLP 462
A+ P +PA T TP T S P + PL + G PA +LP
Sbjct: 1013 AVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPK------GAPTTPA-ATLP 1065
Query: 463 KALAGELTSSETLAHTPQCA----PGGGCRPPRLKSERPRSPAHPSPS-----AFPALLC 513
G T S A TP A P GG P K P PA PS A P
Sbjct: 1066 SPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGA-PMPPAATPPSPKGGLATPPHKG 1124
Query: 514 GDSCCFGGDAKPRGGVSGQPPPSNEPEKPAAAAGGP 549
+ P+GG++ PPP P PAA P
Sbjct: 1125 APTTPAATPPSPKGGLA-TPPPKGAPTTPAATPPSP 1159
Score = 32.7 bits (73), Expect = 0.98
Identities = 33/110 (30%), Positives = 39/110 (35%), Gaps = 12/110 (10%)
Query: 456 PAFLSLPKALAGELTSSETLAHTPQCA----PGGGCRPPRLK-SERPRSPAHPSPSAFPA 510
P + P G T S A TP A P GG P K + P + PSP PA
Sbjct: 965 PPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPA 1024
Query: 511 LLCGDSCCFGGDA----KPRGGVSGQPPPSNEPEKPAAAAGGPYLLRGGP 556
A P+G + P P P PAA P +GGP
Sbjct: 1025 ATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSP---KGGP 1071
Score = 31.6 bits (70), Expect = 2.2
Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 500 PAHPSPSAFPALLCGDSCCFGGDAKPRG-GVSGQPPPSNEPEKPAAAAGGPYLLRGGP 556
PA P+P PAL S A P G+ P P P PAA P +GGP
Sbjct: 900 PATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSP---KGGP 954
Score = 31.2 bits (69), Expect = 2.8
Identities = 23/77 (29%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Query: 476 AHTPQCAPGGGCRPPRLKSERPRSPAHPSPS---AFPALLCGDSCCFGGDAKPRGGVSGQ 532
A TP GG PP + + PSP A P + P+GG++
Sbjct: 1107 AATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLA-T 1165
Query: 533 PPPSNEPEKPAAAAGGP 549
PPP P PAA P
Sbjct: 1166 PPPKGAPTTPAATPPSP 1182
Score = 30.8 bits (68), Expect = 3.7
Identities = 30/91 (32%), Positives = 34/91 (37%), Gaps = 19/91 (20%)
Query: 474 TLAHTPQCAPGGGCRP-----PRLKSERPRSP----AHPSPSAFPALLCGDSCCFGGDAK 524
T A TP GG P P + P SP A PSP P
Sbjct: 1197 TPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATP------PS 1250
Query: 525 PRGGVSGQPPPSNEPEKPAAAAGGPYLLRGG 555
P+GG + PPP P PAA P L+GG
Sbjct: 1251 PKGGPA-TPPPKGAPTPPAAT---PPSLKGG 1277
>gi|169217315 PREDICTED: hypothetical protein [Homo sapiens]
Length = 2061
Score = 33.9 bits (76), Expect = 0.44
Identities = 40/109 (36%), Positives = 47/109 (43%), Gaps = 17/109 (15%)
Query: 451 GRRLLPAFLSLPKALAGELTSSETLAHTPQCAPGGGCRPPRLKSERPRSPAHPSPSAFPA 510
G R A S P AL G+ S + A P APG C SER R+ +P+ P
Sbjct: 873 GSRKCTATGSTPGALPGD-RSGVSKATAP--APGALC------SERSRARRSIAPT--PC 921
Query: 511 LLCGDSCCFG-GDAKPRGGVSGQPPPSNEPEKPAAAAGGPYLLRGGPDQ 558
LLCGD G G A G + G + K A A P LRGG Q
Sbjct: 922 LLCGDRSWVGMGIAPTPGALLG-----GKSRKCRAIAITPGALRGGRSQ 965
Score = 29.6 bits (65), Expect = 8.3
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 457 AFLSLPKALAGELTSS-ETLAHTPQCAPGGGCRPPRLKSERP------RSPAHPSPSAFP 509
A S P AL G+ + + + +A TP GG + + P RSPAH + ++ P
Sbjct: 1299 AIASTPGALHGDTSQTHKAIAPTPGDLGGGSSSAHKAITPSPGALHGDRSPAHTAIASTP 1358
Query: 510 ALLCGDS 516
L GDS
Sbjct: 1359 GALHGDS 1365
>gi|113430659 PREDICTED: hypothetical protein [Homo sapiens]
Length = 2061
Score = 33.9 bits (76), Expect = 0.44
Identities = 40/109 (36%), Positives = 47/109 (43%), Gaps = 17/109 (15%)
Query: 451 GRRLLPAFLSLPKALAGELTSSETLAHTPQCAPGGGCRPPRLKSERPRSPAHPSPSAFPA 510
G R A S P AL G+ S + A P APG C SER R+ +P+ P
Sbjct: 873 GSRKCTATGSTPGALPGD-RSGVSKATAP--APGALC------SERSRARRSIAPT--PC 921
Query: 511 LLCGDSCCFG-GDAKPRGGVSGQPPPSNEPEKPAAAAGGPYLLRGGPDQ 558
LLCGD G G A G + G + K A A P LRGG Q
Sbjct: 922 LLCGDRSWVGMGIAPTPGALLG-----GKSRKCRAIAITPGALRGGRSQ 965
Score = 29.6 bits (65), Expect = 8.3
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 457 AFLSLPKALAGELTSS-ETLAHTPQCAPGGGCRPPRLKSERP------RSPAHPSPSAFP 509
A S P AL G+ + + + +A TP GG + + P RSPAH + ++ P
Sbjct: 1299 AIASTPGALHGDTSQTHKAIAPTPGDLGGGSSSAHKAITPSPGALHGDRSPAHTAIASTP 1358
Query: 510 ALLCGDS 516
L GDS
Sbjct: 1359 GALHGDS 1365
>gi|113430177 PREDICTED: hypothetical protein [Homo sapiens]
Length = 2028
Score = 33.9 bits (76), Expect = 0.44
Identities = 40/109 (36%), Positives = 47/109 (43%), Gaps = 17/109 (15%)
Query: 451 GRRLLPAFLSLPKALAGELTSSETLAHTPQCAPGGGCRPPRLKSERPRSPAHPSPSAFPA 510
G R A S P AL G+ S + A P APG C SER R+ +P+ P
Sbjct: 841 GSRKCTATGSTPGALPGD-RSGVSKATAP--APGALC------SERSRARRSIAPT--PC 889
Query: 511 LLCGDSCCFG-GDAKPRGGVSGQPPPSNEPEKPAAAAGGPYLLRGGPDQ 558
LLCGD G G A G + G + K A A P LRGG Q
Sbjct: 890 LLCGDRSWVGMGIAPTPGALLG-----GKSRKCRAIAITPGALRGGRSQ 933
Score = 29.6 bits (65), Expect = 8.3
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 457 AFLSLPKALAGELTSS-ETLAHTPQCAPGGGCRPPRLKSERP------RSPAHPSPSAFP 509
A S P AL G+ + + + +A TP GG + + P RSPAH + ++ P
Sbjct: 1267 AIASTPGALHGDTSQTHKAIAPTPGDLGGGSSSAHKAIAPSPGALHGDRSPAHTAIASTP 1326
Query: 510 ALLCGDS 516
L GDS
Sbjct: 1327 GALHGDS 1333
>gi|113430175 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1934
Score = 33.9 bits (76), Expect = 0.44
Identities = 40/109 (36%), Positives = 47/109 (43%), Gaps = 17/109 (15%)
Query: 451 GRRLLPAFLSLPKALAGELTSSETLAHTPQCAPGGGCRPPRLKSERPRSPAHPSPSAFPA 510
G R A S P AL G+ S + A P APG C SER R+ +P+ P
Sbjct: 747 GSRKCTATGSTPGALPGD-RSGVSKATAP--APGALC------SERSRARRSIAPT--PC 795
Query: 511 LLCGDSCCFG-GDAKPRGGVSGQPPPSNEPEKPAAAAGGPYLLRGGPDQ 558
LLCGD G G A G + G + K A A P LRGG Q
Sbjct: 796 LLCGDRSWVGMGIAPTPGALLG-----GKSRKCRAIAITPGALRGGRSQ 839
Score = 29.6 bits (65), Expect = 8.3
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 457 AFLSLPKALAGELTSS-ETLAHTPQCAPGGGCRPPRLKSERP------RSPAHPSPSAFP 509
A S P AL G+ + + + +A TP GG + + P RSPAH + ++ P
Sbjct: 1173 AIASTPGALHGDTSQTHKAIAPTPGDLGGGSSSAHKAIAPSPGALHGDRSPAHTAIASTP 1232
Query: 510 ALLCGDS 516
L GDS
Sbjct: 1233 GALHGDS 1239
>gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]
Length = 411
Score = 33.5 bits (75), Expect = 0.57
Identities = 33/118 (27%), Positives = 46/118 (38%), Gaps = 33/118 (27%)
Query: 451 GRRLLPAFLSLPKALAGELTSSETLAHTPQCAPGGGCRPPRLKSERPRSPAHPS------ 504
GR LPAF P+A A L +S+T+ P+ G G + RP +P P+
Sbjct: 3 GRAELPAF---PRAGAPPLAASDTVPAAPE---GAG-------AARPAAPLRPTSFSVLD 49
Query: 505 ---PSAF-----------PALLCGDSCCFGGDAKPRGGVSGQPPPSNEPEKPAAAAGG 548
P+ F P + C P SG+PP + E E+ A A G
Sbjct: 50 ILDPNKFNSRRRRCVLLGPVAPAACAPCASAPCAPAPAASGRPPRAEELERRALAGAG 107
>gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [Homo
sapiens]
Length = 828
Score = 33.5 bits (75), Expect = 0.57
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 521 GDAKPRGGVSGQPPPSNEPEKPAAAAGGPYLLRGGPDQ 558
GDA PRG SGQP P +P +P + GP RG P +
Sbjct: 493 GDAGPRGD-SGQPGPKGDPGRPGFSYPGP---RGAPGE 526
>gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Homo
sapiens]
Length = 918
Score = 33.5 bits (75), Expect = 0.57
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 521 GDAKPRGGVSGQPPPSNEPEKPAAAAGGPYLLRGGPDQ 558
GDA PRG SGQP P +P +P + GP RG P +
Sbjct: 493 GDAGPRGD-SGQPGPKGDPGRPGFSYPGP---RGAPGE 526
>gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Homo
sapiens]
Length = 1019
Score = 33.5 bits (75), Expect = 0.57
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 521 GDAKPRGGVSGQPPPSNEPEKPAAAAGGPYLLRGGPDQ 558
GDA PRG SGQP P +P +P + GP RG P +
Sbjct: 493 GDAGPRGD-SGQPGPKGDPGRPGFSYPGP---RGAPGE 526
>gi|55956910 meningioma 1 [Homo sapiens]
Length = 1320
Score = 33.1 bits (74), Expect = 0.75
Identities = 28/101 (27%), Positives = 38/101 (37%), Gaps = 17/101 (16%)
Query: 461 LPKALAGELTSSETLAHTPQCAPGGGCRPPRLKSERPRSPAHPSPSAFPALLCGDSCCFG 520
+P L + S L PQ AP P + + P+ P P P LL + C
Sbjct: 323 MPVGLEPSVGSRHPLMQPPQQAP------PPPQQQPPQQPPQQQPPPPPGLLVRQNSCPP 376
Query: 521 GDAKPRGGVSGQPPPSNEPEKPAAAAGGPYLLRGGPDQHLQ 561
+P+ G +G P + GGP L P QH Q
Sbjct: 377 ALPRPQQGEAGTPSGGLQD-------GGPML----PSQHAQ 406
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,918,960
Number of Sequences: 37866
Number of extensions: 1463569
Number of successful extensions: 5783
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 126
Number of HSP's that attempted gapping in prelim test: 5620
Number of HSP's gapped (non-prelim): 298
length of query: 598
length of database: 18,247,518
effective HSP length: 108
effective length of query: 490
effective length of database: 14,157,990
effective search space: 6937415100
effective search space used: 6937415100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.