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Search of human proteins with 239757462
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757462 PREDICTED: hypothetical protein XP_002345445 [Homo
sapiens]
(259 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757462 PREDICTED: hypothetical protein XP_002345445 [Homo ... 530 e-151
gi|239746465 PREDICTED: hypothetical protein XP_002344255 [Homo ... 409 e-114
gi|239758158 PREDICTED: hypothetical protein [Homo sapiens] 310 1e-84
gi|239743829 PREDICTED: hypothetical protein XP_002344304 [Homo ... 310 1e-84
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens] 35 0.050
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens] 35 0.050
gi|169210350 PREDICTED: hypothetical protein [Homo sapiens] 33 0.19
gi|113426339 PREDICTED: hypothetical protein [Homo sapiens] 33 0.19
gi|113426005 PREDICTED: hypothetical protein [Homo sapiens] 33 0.19
gi|88196790 coiled-coil domain containing 88 [Homo sapiens] 33 0.19
gi|239756835 PREDICTED: hypothetical protein [Homo sapiens] 33 0.32
gi|24586686 voltage-dependent calcium channel gamma-8 subunit [H... 32 0.55
gi|229892270 WD repeats and SOF1 domain containing [Homo sapiens] 31 0.94
gi|239754904 PREDICTED: hypothetical protein [Homo sapiens] 31 0.94
gi|239750574 PREDICTED: hypothetical protein [Homo sapiens] 31 0.94
gi|239749444 PREDICTED: hypothetical protein XP_002347045 [Homo ... 31 0.94
gi|169205732 PREDICTED: hypothetical protein [Homo sapiens] 31 0.94
gi|239743576 PREDICTED: hypothetical protein XP_002342896 [Homo ... 31 0.94
gi|239757232 PREDICTED: hypothetical protein [Homo sapiens] 31 1.2
gi|239751740 PREDICTED: hypothetical protein [Homo sapiens] 31 1.2
gi|239746241 PREDICTED: hypothetical protein XP_002343712 [Homo ... 31 1.2
gi|239744725 PREDICTED: hypothetical protein XP_002343253 [Homo ... 31 1.2
gi|157502199 CUB and Sushi multiple domains 1 [Homo sapiens] 31 1.2
gi|76880480 hypothetical protein LOC9865 [Homo sapiens] 31 1.2
gi|150456449 hexosaminidase (glycosyl hydrolase family 20, catal... 30 1.6
gi|7662350 cell recognition molecule Caspr2 precursor [Homo sapi... 30 1.6
gi|239757149 PREDICTED: hypothetical protein [Homo sapiens] 30 2.1
gi|239751657 PREDICTED: hypothetical protein XP_002347944 [Homo ... 30 2.1
gi|239746163 PREDICTED: hypothetical protein XP_002343666 [Homo ... 30 2.1
gi|7710121 engrailed homeobox 2 [Homo sapiens] 30 2.1
>gi|239757462 PREDICTED: hypothetical protein XP_002345445 [Homo
sapiens]
Length = 259
Score = 530 bits (1365), Expect = e-151
Identities = 259/259 (100%), Positives = 259/259 (100%)
Query: 1 MRPDSSRGPGGNAQYLYVQSTSGKSASRGLERCLRGPKLVGTGPRVTRPSILFPGSSARE 60
MRPDSSRGPGGNAQYLYVQSTSGKSASRGLERCLRGPKLVGTGPRVTRPSILFPGSSARE
Sbjct: 1 MRPDSSRGPGGNAQYLYVQSTSGKSASRGLERCLRGPKLVGTGPRVTRPSILFPGSSARE 60
Query: 61 AAPLCTGARNRRPASVQHRQGQSEAWEATKPALCTTASTGFAGVECIRKELRRLPPELQD 120
AAPLCTGARNRRPASVQHRQGQSEAWEATKPALCTTASTGFAGVECIRKELRRLPPELQD
Sbjct: 61 AAPLCTGARNRRPASVQHRQGQSEAWEATKPALCTTASTGFAGVECIRKELRRLPPELQD 120
Query: 121 PALHLGSLEHELARLHIRVLGHGSGRLLRGQAEAGSGRVCDLEQHQGREEQKWRRSKHSL 180
PALHLGSLEHELARLHIRVLGHGSGRLLRGQAEAGSGRVCDLEQHQGREEQKWRRSKHSL
Sbjct: 121 PALHLGSLEHELARLHIRVLGHGSGRLLRGQAEAGSGRVCDLEQHQGREEQKWRRSKHSL 180
Query: 181 TAYVCPEPASVFTQTVNARDFHFQVSAGRGGGAGREEGATAAAEGRKVSACICSLAPSRG 240
TAYVCPEPASVFTQTVNARDFHFQVSAGRGGGAGREEGATAAAEGRKVSACICSLAPSRG
Sbjct: 181 TAYVCPEPASVFTQTVNARDFHFQVSAGRGGGAGREEGATAAAEGRKVSACICSLAPSRG 240
Query: 241 APEDSCLPEVGKARPRRRC 259
APEDSCLPEVGKARPRRRC
Sbjct: 241 APEDSCLPEVGKARPRRRC 259
>gi|239746465 PREDICTED: hypothetical protein XP_002344255 [Homo
sapiens]
Length = 271
Score = 409 bits (1052), Expect = e-114
Identities = 201/204 (98%), Positives = 201/204 (98%)
Query: 11 GNAQYLYVQSTSGKSASRGLERCLRGPKLVGTGPRVTRPSILFPGSSAREAAPLCTGARN 70
GNAQYLYVQSTSGKSASRGLERCLRGPKLVGTGPRVTRPSILFPGSSAREAAPLCTGARN
Sbjct: 15 GNAQYLYVQSTSGKSASRGLERCLRGPKLVGTGPRVTRPSILFPGSSAREAAPLCTGARN 74
Query: 71 RRPASVQHRQGQSEAWEATKPALCTTASTGFAGVECIRKELRRLPPELQDPALHLGSLEH 130
R PASVQ RQGQSEAWEATKPALCTTASTGFAGVECIRKELRRLPPELQDPALHLGSLEH
Sbjct: 75 RGPASVQPRQGQSEAWEATKPALCTTASTGFAGVECIRKELRRLPPELQDPALHLGSLEH 134
Query: 131 ELARLHIRVLGHGSGRLLRGQAEAGSGRVCDLEQHQGREEQKWRRSKHSLTAYVCPEPAS 190
ELARLHIRVLGHGSGRLLRGQAEAGSGRVCDLEQHQGREEQKWRRSKHSLTAYVCPEPAS
Sbjct: 135 ELARLHIRVLGHGSGRLLRGQAEAGSGRVCDLEQHQGREEQKWRRSKHSLTAYVCPEPAS 194
Query: 191 VFTQTVNARDFHFQVSAGRGGGAG 214
VFTQTVNARDFHFQVSAGRGGG G
Sbjct: 195 VFTQTVNARDFHFQVSAGRGGGGG 218
>gi|239758158 PREDICTED: hypothetical protein [Homo sapiens]
Length = 230
Score = 310 bits (793), Expect = 1e-84
Identities = 152/170 (89%), Positives = 160/170 (94%)
Query: 13 AQYLYVQSTSGKSASRGLERCLRGPKLVGTGPRVTRPSILFPGSSAREAAPLCTGARNRR 72
AQYL+VQSTSGKSASRGLERCL+GPKLVGTG RVTRPSILFPGSSA+EAAPLCTGAR
Sbjct: 61 AQYLHVQSTSGKSASRGLERCLKGPKLVGTGSRVTRPSILFPGSSAQEAAPLCTGARKGG 120
Query: 73 PASVQHRQGQSEAWEATKPALCTTASTGFAGVECIRKELRRLPPELQDPALHLGSLEHEL 132
PAS+Q RQGQSEAWEATKPAL TASTGFAGVEC+RKELRRLPPELQDPALHLGSLEH+L
Sbjct: 121 PASIQPRQGQSEAWEATKPALRITASTGFAGVECVRKELRRLPPELQDPALHLGSLEHKL 180
Query: 133 ARLHIRVLGHGSGRLLRGQAEAGSGRVCDLEQHQGREEQKWRRSKHSLTA 182
RLHIR+LGHGSGRLLRG+AEAGSGRVCDLEQHQG EEQKWRRSKHS TA
Sbjct: 181 GRLHIRILGHGSGRLLRGEAEAGSGRVCDLEQHQGGEEQKWRRSKHSRTA 230
>gi|239743829 PREDICTED: hypothetical protein XP_002344304 [Homo
sapiens]
Length = 259
Score = 310 bits (793), Expect = 1e-84
Identities = 152/170 (89%), Positives = 160/170 (94%)
Query: 13 AQYLYVQSTSGKSASRGLERCLRGPKLVGTGPRVTRPSILFPGSSAREAAPLCTGARNRR 72
AQYL+VQSTSGKSASRGLERCL+GPKLVGTG RVTRPSILFPGSSA+EAAPLCTGAR
Sbjct: 90 AQYLHVQSTSGKSASRGLERCLKGPKLVGTGSRVTRPSILFPGSSAQEAAPLCTGARKGG 149
Query: 73 PASVQHRQGQSEAWEATKPALCTTASTGFAGVECIRKELRRLPPELQDPALHLGSLEHEL 132
PAS+Q RQGQSEAWEATKPAL TASTGFAGVEC+RKELRRLPPELQDPALHLGSLEH+L
Sbjct: 150 PASIQPRQGQSEAWEATKPALRITASTGFAGVECVRKELRRLPPELQDPALHLGSLEHKL 209
Query: 133 ARLHIRVLGHGSGRLLRGQAEAGSGRVCDLEQHQGREEQKWRRSKHSLTA 182
RLHIR+LGHGSGRLLRG+AEAGSGRVCDLEQHQG EEQKWRRSKHS TA
Sbjct: 210 GRLHIRILGHGSGRLLRGEAEAGSGRVCDLEQHQGGEEQKWRRSKHSRTA 259
>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 35.4 bits (80), Expect = 0.050
Identities = 65/257 (25%), Positives = 84/257 (32%), Gaps = 52/257 (20%)
Query: 35 RGPKLVGTGPRVTRPSILFPGSSAREAAPLCT----------------------GARNRR 72
RG ++ R T P L AR A LC G
Sbjct: 54 RGVEVASGRTRWTGPQPLVDTPPARRAGELCEAPQTAPGFHFQPFLSLSPHQERGRSKPS 113
Query: 73 PASVQHRQGQSEAWEATKPALCTTASTGFAGVECIRKELRRLPP-ELQDPALHLGSLEHE 131
P R+G++ W+ + + T A + PP L P H G
Sbjct: 114 PPVSGTRRGKTGQWKEGRGSHPTPEPQRLAARRWLHSPREPTPPGRLSAPPRH-GPHPQS 172
Query: 132 LARLHIRVLGHGSGRLLRGQAEAGSGRVCDLEQHQGREEQKW-RRSKHSL-----TAYVC 185
R G GSGR+ RGQ E+Q W +RS H L A +
Sbjct: 173 FRRPSAHPPGRGSGRVPRGQP----------------EQQAWEQRSSHFLAPEGSVASLL 216
Query: 186 P--EPASVFTQTVNARDFHFQVSAGRGGGAGREEGATAAAE---GRKVSACICSLAPSRG 240
P +PA AR+ S GR GGA R +A + R + A SLA S
Sbjct: 217 PSAKPARAPRPAPRAREEAAAGSRGR-GGAERPAARGSAQQPPLARLLLASAVSLAASLA 275
Query: 241 APEDSCLPEVGKARPRR 257
P +G A P R
Sbjct: 276 RSPPPLQPRLGSASPPR 292
>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 35.4 bits (80), Expect = 0.050
Identities = 65/257 (25%), Positives = 84/257 (32%), Gaps = 52/257 (20%)
Query: 35 RGPKLVGTGPRVTRPSILFPGSSAREAAPLCT----------------------GARNRR 72
RG ++ R T P L AR A LC G
Sbjct: 54 RGVEVASGRTRWTGPQPLVDTPPARRAGELCEAPQTAPGFHFQPFLSLSPHQERGRSKPS 113
Query: 73 PASVQHRQGQSEAWEATKPALCTTASTGFAGVECIRKELRRLPP-ELQDPALHLGSLEHE 131
P R+G++ W+ + + T A + PP L P H G
Sbjct: 114 PPVSGTRRGKTGQWKEGRGSHPTPEPQRLAARRWLHSPREPTPPGRLSAPPRH-GPHPQS 172
Query: 132 LARLHIRVLGHGSGRLLRGQAEAGSGRVCDLEQHQGREEQKW-RRSKHSL-----TAYVC 185
R G GSGR+ RGQ E+Q W +RS H L A +
Sbjct: 173 FRRPSAHPPGRGSGRVPRGQP----------------EQQAWEQRSSHFLAPEGSVASLL 216
Query: 186 P--EPASVFTQTVNARDFHFQVSAGRGGGAGREEGATAAAE---GRKVSACICSLAPSRG 240
P +PA AR+ S GR GGA R +A + R + A SLA S
Sbjct: 217 PSAKPARAPRPAPRAREEAAAGSRGR-GGAERPAARGSAQQPPLARLLLASAVSLAASLA 275
Query: 241 APEDSCLPEVGKARPRR 257
P +G A P R
Sbjct: 276 RSPPPLQPRLGSASPPR 292
>gi|169210350 PREDICTED: hypothetical protein [Homo sapiens]
Length = 165
Score = 33.5 bits (75), Expect = 0.19
Identities = 28/100 (28%), Positives = 36/100 (36%), Gaps = 11/100 (11%)
Query: 149 RGQAEAGSGR-----------VCDLEQHQGREEQKWRRSKHSLTAYVCPEPASVFTQTVN 197
RG+ EA G V + + EEQ + H+ TA P P S
Sbjct: 53 RGEREADEGEATSFPGPCAAHVAGAPEDEDDEEQAVAAAPHAHTATASPPPGSARRAAAV 112
Query: 198 ARDFHFQVSAGRGGGAGREEGATAAAEGRKVSACICSLAP 237
AR + R G GRE G AE R+ + AP
Sbjct: 113 ARHAGSEGRGWRPPGLGREAGPVGGAEPREAGSIAGRPAP 152
>gi|113426339 PREDICTED: hypothetical protein [Homo sapiens]
Length = 165
Score = 33.5 bits (75), Expect = 0.19
Identities = 28/100 (28%), Positives = 36/100 (36%), Gaps = 11/100 (11%)
Query: 149 RGQAEAGSGR-----------VCDLEQHQGREEQKWRRSKHSLTAYVCPEPASVFTQTVN 197
RG+ EA G V + + EEQ + H+ TA P P S
Sbjct: 53 RGEREADEGEATSFPGPCAAHVAGAPEDEDDEEQAVAAAPHAHTATASPPPGSARRAAAV 112
Query: 198 ARDFHFQVSAGRGGGAGREEGATAAAEGRKVSACICSLAP 237
AR + R G GRE G AE R+ + AP
Sbjct: 113 ARHAGSEGRGWRPPGLGREAGPVGGAEPREAGSIAGRPAP 152
>gi|113426005 PREDICTED: hypothetical protein [Homo sapiens]
Length = 165
Score = 33.5 bits (75), Expect = 0.19
Identities = 28/100 (28%), Positives = 36/100 (36%), Gaps = 11/100 (11%)
Query: 149 RGQAEAGSGR-----------VCDLEQHQGREEQKWRRSKHSLTAYVCPEPASVFTQTVN 197
RG+ EA G V + + EEQ + H+ TA P P S
Sbjct: 53 RGEREADEGEATSFPGPCAAHVAGAPEDEDDEEQAVAAAPHAHTATASPPPGSARRAAAV 112
Query: 198 ARDFHFQVSAGRGGGAGREEGATAAAEGRKVSACICSLAP 237
AR + R G GRE G AE R+ + AP
Sbjct: 113 ARHAGSEGRGWRPPGLGREAGPVGGAEPREAGSIAGRPAP 152
>gi|88196790 coiled-coil domain containing 88 [Homo sapiens]
Length = 1476
Score = 33.5 bits (75), Expect = 0.19
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 24/142 (16%)
Query: 68 ARNRRPASVQHRQGQSEAWEATKPALCTTASTGFAGVECIRKELRRLPPELQDPALHLGS 127
A+ RR + HR+ +++AWE + +R+ + EL+ + +
Sbjct: 770 AQARRAEAEAHREAEAQAWEQAR----------------LREAVEAAGQELESASQEREA 813
Query: 128 LEHELARL-HIRVLGHGSGRLLRGQAEAGSGRVCDLEQHQGR----EEQKWRRSKHSLTA 182
L LA R G LR Q+EA R+ LE +GR E ++ RR K +L A
Sbjct: 814 LVEALAAAGRERRQWEREGSRLRAQSEAAEERMQVLES-EGRQHLEEAERERREKEALQA 872
Query: 183 YVCPEPASVFTQTVNARDFHFQ 204
+ E A V + + AR H Q
Sbjct: 873 EL--EKAVVRGKELGARLEHLQ 892
>gi|239756835 PREDICTED: hypothetical protein [Homo sapiens]
Length = 386
Score = 32.7 bits (73), Expect = 0.32
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 18 VQSTSGKSASRGLERCLRGPKLVGTGPRVTRPSILFPGSSAREAAPLCTGARNRRPASVQ 77
+Q ++G+S RG R R P P + P + AR P+ GAR RP+ Q
Sbjct: 268 IQKSNGRSLVRGAPRRAR--------PEPRDPQVAAPRTPARPLPPVQGGARWHRPSPAQ 319
Query: 78 HRQG 81
R G
Sbjct: 320 GRLG 323
>gi|24586686 voltage-dependent calcium channel gamma-8 subunit [Homo
sapiens]
Length = 425
Score = 32.0 bits (71), Expect = 0.55
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 5 SSRGPGGNAQYLYVQSTSGKSASRGLERCLRGPKLVGTGPRVTRPSILFPGSSAREAAPL 64
+ R GG + +L + + K A G+ + GP P PS PG+ A+EAA
Sbjct: 355 AERDRGGASGFLTLHNAFPKEAGGGVTVTVTGPP-APPAPAPPAPSAPAPGTLAKEAAAS 413
Query: 65 CTGARNRRPASV 76
T NR+ V
Sbjct: 414 NTNTLNRKTTPV 425
>gi|229892270 WD repeats and SOF1 domain containing [Homo sapiens]
Length = 597
Score = 31.2 bits (69), Expect = 0.94
Identities = 35/130 (26%), Positives = 52/130 (40%), Gaps = 13/130 (10%)
Query: 35 RGPKLVGTGPRVTRPSILFP------GSSAREAAPLCTGARNRRPASVQHRQGQSEAWEA 88
R P + T P +L P G S+ E A TG R+ + +G+S+ +
Sbjct: 9 RSPLVSATPPPGPTRGLLCPRRVSEAGDSSTEGAR--TGHRHYVTPAESAMEGRSQPLPS 66
Query: 89 TKPALCTTASTGFAGVECIRKELRRLPPELQDPALHLGSLEHELARLHIRVLGHGSGRLL 148
+PA T A G +C KE PP + G+ + + R H +G L
Sbjct: 67 LRPASPTNAPAHGRGSDCTAKE----PPLANVCRQNYGAAQDPVEPAGRRSASHVTGSSL 122
Query: 149 RGQAEAGSGR 158
G+AE GR
Sbjct: 123 -GKAEVACGR 131
>gi|239754904 PREDICTED: hypothetical protein [Homo sapiens]
Length = 230
Score = 31.2 bits (69), Expect = 0.94
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 190 SVFTQTVNARDFHFQVSAGRGGGAGR------EEGATAAAEGRKVSACICSLAP 237
++F T + FHFQ S GR G+G G EG +V C C+L P
Sbjct: 62 AIFNSTNKTKFFHFQASGGRLQGSGALFQPRVRRGTYCFWEGPRVGLC-CALDP 114
>gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 31.2 bits (69), Expect = 0.94
Identities = 28/84 (33%), Positives = 33/84 (39%), Gaps = 11/84 (13%)
Query: 150 GQAEAGSGRVCDLEQHQGREEQKWRRSKHSLTAYVCPEPASVFTQTVNARDFHFQV---- 205
G A G V ++ R +H A VCP+ A+ V A D V
Sbjct: 634 GHAGGAHGHVVVAPAAAAPTAREGRAGRHGHVAVVCPQVAA--GAPVGA-DLDVSVVLWV 690
Query: 206 ----SAGRGGGAGREEGATAAAEG 225
GRG GAGR E A AA EG
Sbjct: 691 GVVGHLGRGRGAGRAEAARAAREG 714
>gi|239749444 PREDICTED: hypothetical protein XP_002347045 [Homo
sapiens]
Length = 230
Score = 31.2 bits (69), Expect = 0.94
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 190 SVFTQTVNARDFHFQVSAGRGGGAGR------EEGATAAAEGRKVSACICSLAP 237
++F T + FHFQ S GR G+G G EG +V C C+L P
Sbjct: 62 AIFNSTNKTKFFHFQASGGRLQGSGALFQPRVRRGTYCFWEGPRVGLC-CALDP 114
>gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 31.2 bits (69), Expect = 0.94
Identities = 28/84 (33%), Positives = 33/84 (39%), Gaps = 11/84 (13%)
Query: 150 GQAEAGSGRVCDLEQHQGREEQKWRRSKHSLTAYVCPEPASVFTQTVNARDFHFQV---- 205
G A G V ++ R +H A VCP+ A+ V A D V
Sbjct: 634 GHAGGAHGHVVVAPAAAAPTAREGRAGRHGHVAVVCPQVAA--GAPVGA-DLDVSVVLWV 690
Query: 206 ----SAGRGGGAGREEGATAAAEG 225
GRG GAGR E A AA EG
Sbjct: 691 GVVGHLGRGRGAGRAEAARAAREG 714
>gi|239743576 PREDICTED: hypothetical protein XP_002342896 [Homo
sapiens]
Length = 230
Score = 31.2 bits (69), Expect = 0.94
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 190 SVFTQTVNARDFHFQVSAGRGGGAGR------EEGATAAAEGRKVSACICSLAP 237
++F T + FHFQ S GR G+G G EG +V C C+L P
Sbjct: 62 AIFNSTNKTKFFHFQASGGRLQGSGALFQPRVRRGTYCFWEGPRVGLC-CALDP 114
>gi|239757232 PREDICTED: hypothetical protein [Homo sapiens]
Length = 461
Score = 30.8 bits (68), Expect = 1.2
Identities = 28/84 (33%), Positives = 34/84 (40%), Gaps = 15/84 (17%)
Query: 5 SSRGPGGNAQYLYVQSTSGKSASRGLERCL-------------RGPKLVGTGPRVTRPSI 51
+SR GG Q L S G +R C +G +L G R R
Sbjct: 363 ASRWGGGGPQPLPQVSKEGSGLARPDPSCCVRAGLGAAKTPGAQGERLGPRGTRRARGLQ 422
Query: 52 LFP--GSSAREAAPLCTGARNRRP 73
L P G S REAAP C+G + RP
Sbjct: 423 LRPVGGQSRREAAPACSGPQPCRP 446
>gi|239751740 PREDICTED: hypothetical protein [Homo sapiens]
Length = 461
Score = 30.8 bits (68), Expect = 1.2
Identities = 28/84 (33%), Positives = 34/84 (40%), Gaps = 15/84 (17%)
Query: 5 SSRGPGGNAQYLYVQSTSGKSASRGLERCL-------------RGPKLVGTGPRVTRPSI 51
+SR GG Q L S G +R C +G +L G R R
Sbjct: 363 ASRWGGGGPQPLPQVSKEGSGLARPDPSCCVRAGLGAAKTPGAQGERLGPRGTRRARGLQ 422
Query: 52 LFP--GSSAREAAPLCTGARNRRP 73
L P G S REAAP C+G + RP
Sbjct: 423 LRPVGGQSRREAAPACSGPQPCRP 446
>gi|239746241 PREDICTED: hypothetical protein XP_002343712 [Homo
sapiens]
Length = 461
Score = 30.8 bits (68), Expect = 1.2
Identities = 28/84 (33%), Positives = 34/84 (40%), Gaps = 15/84 (17%)
Query: 5 SSRGPGGNAQYLYVQSTSGKSASRGLERCL-------------RGPKLVGTGPRVTRPSI 51
+SR GG Q L S G +R C +G +L G R R
Sbjct: 363 ASRWGGGGPQPLPQVSKEGSGLARPDPSCCVRAGLGAAKTPGAQGERLGPRGTRRARGLQ 422
Query: 52 LFP--GSSAREAAPLCTGARNRRP 73
L P G S REAAP C+G + RP
Sbjct: 423 LRPVGGQSRREAAPACSGPQPCRP 446
>gi|239744725 PREDICTED: hypothetical protein XP_002343253 [Homo
sapiens]
Length = 756
Score = 30.8 bits (68), Expect = 1.2
Identities = 43/157 (27%), Positives = 56/157 (35%), Gaps = 20/157 (12%)
Query: 108 RKELRRLPPELQD-PALHLGSLEHELA------RLHIRVLGHGSGRLLRGQAEAGSGRVC 160
R +R PP L PA+H G + +A RL R+ G G+ L GQA G G +
Sbjct: 538 RGPAQRQPPALPACPAVHGGLVGQAVAQHRLLQRLGWRLPGQAPGQELLGQARPGGG-LS 596
Query: 161 DLEQHQGREE--QKWRRSKHSLTAYVCPEPASVFTQTVNARDFHFQVSAGRGGGAGREEG 218
L G +W+ + V A V R Q+ G G R G
Sbjct: 597 SLSGGPGGGSGVGRWQLPGRAAAEDVAEAAAKVLEGAGPGRPRRGQLLRAAGLGQARGGG 656
Query: 219 ATAAAEGRKVSACICSLAPSRGAPEDSCLPEVGKARP 255
A A GR G +C+P V RP
Sbjct: 657 AGAWLRGRL----------GLGWGPTACVPVVAARRP 683
>gi|157502199 CUB and Sushi multiple domains 1 [Homo sapiens]
Length = 3565
Score = 30.8 bits (68), Expect = 1.2
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 169 EEQKWRRSKHSLTAYVCPEPASVFTQTVNARDFHF--QVSAGRGGGAGREEGATAAAEGR 226
++ +W SK A +CP+P V TV DF + +S G A + EGR
Sbjct: 3082 KDGRWNPSKPVCKAVLCPQPPPVQNGTVEGSDFRWGSSISYSCMDGYQLSHSAILSCEGR 3141
Query: 227 KV 228
V
Sbjct: 3142 GV 3143
>gi|76880480 hypothetical protein LOC9865 [Homo sapiens]
Length = 811
Score = 30.8 bits (68), Expect = 1.2
Identities = 41/159 (25%), Positives = 64/159 (40%), Gaps = 16/159 (10%)
Query: 3 PDSSRGPGGNAQYLYVQSTSGKSASRGLERCLRGPKLVGTGPRVTRPSILFPGSSA--RE 60
PD+ P GN YL+++S + + L + + +PS+ + A R
Sbjct: 171 PDAVFAPLGNLLYLHLESNRIRFLGKNAFAQLGKLRFLNLSANELQPSLRHAATFAPLRS 230
Query: 61 AAPLCTGARNRR---PASVQHRQGQSEAWEATKPALCTTASTGFAGVECIRK------EL 111
+ L A N + P QH + L A F G+E +R+ L
Sbjct: 231 LSSLILSANNLQHLGPRIFQHLP-RLGLLSLRGNQLTHLAPEAFWGLEALRELRLEGNRL 289
Query: 112 RRLPPELQDPALHLGSLE---HELARLHIRVLGHGSGRL 147
+LP L +P L +L+ +EL+ LH GH GRL
Sbjct: 290 SQLPTALLEPLHSLEALDLSGNELSALHPATFGH-LGRL 327
>gi|150456449 hexosaminidase (glycosyl hydrolase family 20,
catalytic domain) containing [Homo sapiens]
Length = 585
Score = 30.4 bits (67), Expect = 1.6
Identities = 41/131 (31%), Positives = 49/131 (37%), Gaps = 17/131 (12%)
Query: 32 RCLR--GPKLVGTGPRVTRPSIL----FPGSSAREAAPLCTGARN----RRPAS-VQHRQ 80
RC R G L G+ P S F SS + +A +GA + R P S + R
Sbjct: 412 RCWRATGMSLAGSAPTTASGSSSTRSWFSTSSPQRSASWHSGAPSCRSWRLPCSWLSTRM 471
Query: 81 GQSEAWEATKPALCTTASTGFAGVECIRKELRRLPPELQDPALHLGSLEHELARLHIRVL 140
W T CT A +G C R R LPP PAL L R H R L
Sbjct: 472 PWRSGWRKT----CTPACSGCK--LCCRTSARCLPPRCHPPALAGTLLRTPEGRAHARGL 525
Query: 141 GHGSGRLLRGQ 151
+G L Q
Sbjct: 526 LLEAGGALHCQ 536
>gi|7662350 cell recognition molecule Caspr2 precursor [Homo
sapiens]
Length = 1331
Score = 30.4 bits (67), Expect = 1.6
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 54 PGSSAREAAPLCTGARNRRPASVQHRQGQSEAWEATKPALCTTASTGFAGVEC 106
PGS A + +C P +H S+ W++ K CT TG++G C
Sbjct: 541 PGSFANVSIDMCAIIDRCVPNHCEHGGKCSQTWDSFK---CTCDETGYSGATC 590
>gi|239757149 PREDICTED: hypothetical protein [Homo sapiens]
Length = 72
Score = 30.0 bits (66), Expect = 2.1
Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 10/62 (16%)
Query: 208 GRGGGAGR------EEGATAAAEGRKVSACICSLAPS----RGAPEDSCLPEVGKARPRR 257
GR G AG A AA+GR + + P+ RG P SC E RPR
Sbjct: 11 GRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPGTSCARETRVRRPRN 70
Query: 258 RC 259
RC
Sbjct: 71 RC 72
>gi|239751657 PREDICTED: hypothetical protein XP_002347944 [Homo
sapiens]
Length = 72
Score = 30.0 bits (66), Expect = 2.1
Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 10/62 (16%)
Query: 208 GRGGGAGR------EEGATAAAEGRKVSACICSLAPS----RGAPEDSCLPEVGKARPRR 257
GR G AG A AA+GR + + P+ RG P SC E RPR
Sbjct: 11 GRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPGTSCARETRVRRPRN 70
Query: 258 RC 259
RC
Sbjct: 71 RC 72
>gi|239746163 PREDICTED: hypothetical protein XP_002343666 [Homo
sapiens]
Length = 72
Score = 30.0 bits (66), Expect = 2.1
Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 10/62 (16%)
Query: 208 GRGGGAGR------EEGATAAAEGRKVSACICSLAPS----RGAPEDSCLPEVGKARPRR 257
GR G AG A AA+GR + + P+ RG P SC E RPR
Sbjct: 11 GRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPGTSCARETRVRRPRN 70
Query: 258 RC 259
RC
Sbjct: 71 RC 72
>gi|7710121 engrailed homeobox 2 [Homo sapiens]
Length = 333
Score = 30.0 bits (66), Expect = 2.1
Identities = 32/118 (27%), Positives = 42/118 (35%), Gaps = 9/118 (7%)
Query: 143 GSGRLLRGQAEAGSGRVCDLE---QHQGREEQKWRRSKHSLTAYVCPEPASVFTQTVNAR 199
G G G+A+ G R L Q G + R + + + PE F + +A
Sbjct: 31 GGGGSSPGEADTGRRRALMLPAVLQAPGNHQHPHRITNFFIDNILRPE----FGRRKDAG 86
Query: 200 DFHFQVSAGRGGGAGREEGATAAAEGRKVSACICSLAPSRGAPEDS--CLPEVGKARP 255
GRGGGAG E GA+ A G L P + C P G P
Sbjct: 87 TCCAGAGGGRGGGAGGEGGASGAEGGGGAGGSEQLLGSGSREPRQNPPCAPGAGGPLP 144
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.132 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,365,007
Number of Sequences: 37866
Number of extensions: 633815
Number of successful extensions: 2212
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 2183
Number of HSP's gapped (non-prelim): 68
length of query: 259
length of database: 18,247,518
effective HSP length: 100
effective length of query: 159
effective length of database: 14,460,918
effective search space: 2299285962
effective search space used: 2299285962
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.