Guide to the Human Genome
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Name: LOC100287993 Sequence: fasta or formatted (271aa) NCBI GI: 239746465
Description:

PREDICTED: hypothetical protein XP_002344255

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0         27           2
 C cysteine            3.0          8           1
 D aspartate           1.5          4           1
 E glutamate           6.3         17           2
 F phenylalanine       1.8          5           1
 G glycine            13.7         37           5
 H histidine           2.6          7           1
 I isoleucine          2.2          6           1
 K lysine              2.6          7           1
 L leucine            11.1         30           2
 M methionine          0.7          2           1
 N asparagine          1.8          5           1
 P proline             7.0         19           2
 Q glutamine           5.2         14           1
 R arginine           10.0         27           2
 S serine              8.5         23           2
 T threonine           4.4         12           2
 V valine              5.2         14           1
 W tryptophan          1.1          3           1
 Y tyrosine            1.5          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344255 
LOC100291888          0.729   PREDICTED: hypothetical protein XP_002345445 
LOC100292288          0.558   PREDICTED: hypothetical protein 
LOC100287409          0.558   PREDICTED: hypothetical protein XP_002344304 
ANKRD17               0.021   ankyrin repeat domain protein 17 isoform a 
ANKRD17               0.021   ankyrin repeat domain protein 17 isoform b 
LOC100289721          0.015   PREDICTED: hypothetical protein XP_002347280 
LOC643355             0.015   PREDICTED: hypothetical protein 
LOC643355             0.015   PREDICTED: hypothetical protein 
C9orf66               0.015   hypothetical protein LOC157983 
KHSRP                 0.015   KH-type splicing regulatory protein 
SEMA6B                0.013   semaphorin 6B precursor 
DCAF13                0.013   WD repeats and SOF1 domain containing 
MAST3                 0.013   microtubule associated serine/threonine kinase 3 [H...
LOC100292058          0.011   PREDICTED: hypothetical protein XP_002344766 
LOC100290367          0.011   PREDICTED: hypothetical protein XP_002347417 
LOC100288730          0.011   PREDICTED: hypothetical protein XP_002343287 
KRBA1                 0.011   KRAB A domain containing 1 
RIN3                  0.011   Ras and Rab interactor 3 
KRTAP4-9              0.009   PREDICTED: keratin associated protein 4-9 
KIF3C                 0.009   kinesin family member 3C 
ZNF384                0.009   nuclear matrix transcription factor 4 isoform c [Hom...
ZNF384                0.009   nuclear matrix transcription factor 4 isoform b [Hom...
ZNF384                0.009   nuclear matrix transcription factor 4 isoform b [Hom...
ZNF384                0.009   nuclear matrix transcription factor 4 isoform a [Hom...
ZNF384                0.009   nuclear matrix transcription factor 4 isoform a [Hom...
ZNF384                0.009   nuclear matrix transcription factor 4 isoform a [Hom...
ZNF384                0.009   nuclear matrix transcription factor 4 isoform d [Ho...
LOC100291533          0.009   PREDICTED: hypothetical protein XP_002347080 
LOC100288002          0.009   PREDICTED: hypothetical protein XP_002342946 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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