Guide to the Human Genome
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Name: LOC100293687 Sequence: fasta or formatted (386aa) NCBI GI: 239756835
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         34           2
 C cysteine            1.0          4           1
 D aspartate           2.6         10           1
 E glutamate           3.6         14           1
 F phenylalanine       1.8          7           2
 G glycine            10.4         40           2
 H histidine           1.0          4           1
 I isoleucine          1.8          7           1
 K lysine              3.4         13           1
 L leucine            11.9         46           3
 M methionine          2.6         10           2
 N asparagine          1.0          4           1
 P proline             9.3         36           2
 Q glutamine           4.7         18           1
 R arginine           11.4         44           2
 S serine              9.1         35           4
 T threonine           6.7         26           3
 V valine              6.2         24           2
 W tryptophan          2.1          8           2
 Y tyrosine            0.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290986          0.636   PREDICTED: hypothetical protein XP_002347803 
LOC100287773          0.636   PREDICTED: hypothetical protein XP_002343596 
WASL                  0.027   Wiskott-Aldrich syndrome gene-like protein 
HES7                  0.023   hairy and enhancer of split 7 
LOC100130506          0.023   PREDICTED: hypothetical protein 
LOC100288911          0.023   PREDICTED: hypothetical protein XP_002342241 
WAS                   0.023   Wiskott-Aldrich syndrome protein 
LOC730036             0.021   PREDICTED: hypothetical protein 
LOC100132261          0.021   PREDICTED: similar to hCG2023245 
TAF4                  0.020   TBP-associated factor 4 
TAOK2                 0.020   TAO kinase 2 isoform 1 
PRB2                  0.020   proline-rich protein BstNI subfamily 2 
C9orf75               0.020   hypothetical protein LOC286262 isoform 2 
C9orf75               0.020   hypothetical protein LOC286262 isoform 1 
DZIP1L                0.020   DAZ interacting protein 1-like 
BBC3                  0.019   BCL2 binding component 3 isoform 1 
FMN1                  0.019   formin 1 
IRX5                  0.019   iroquois homeobox protein 5 
PRB1                  0.019   proline-rich protein BstNI subfamily 1 isoform 1 pre...
PRB1                  0.019   proline-rich protein BstNI subfamily 1 isoform 3 pre...
AGAP2                 0.019   centaurin, gamma 1 isoform PIKE-L 
TNRC18                0.019   trinucleotide repeat containing 18 
DTX1                  0.019   deltex homolog 1 
DCAF10                0.017   WD repeat domain 32 
LOC100291807          0.017   PREDICTED: hypothetical protein XP_002345507 
SPTBN4                0.017   spectrin, beta, non-erythrocytic 4 isoform sigma1 [...
LOC283999             0.017   hypothetical protein LOC283999 
ELK1                  0.017   ELK1 protein 
ELK1                  0.017   ELK1 protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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