Guide to the Human Genome
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Name: LOC100288066 Sequence: fasta or formatted (230aa) NCBI GI: 239743576
Description:

PREDICTED: hypothetical protein XP_002342896

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         13           1
 C cysteine            2.6          6           2
 D aspartate           2.6          6           1
 E glutamate           4.8         11           1
 F phenylalanine       5.7         13           2
 G glycine             8.7         20           2
 H histidine           4.8         11           2
 I isoleucine          3.5          8           1
 K lysine              8.3         19           4
 L leucine             9.1         21           2
 M methionine          1.3          3           1
 N asparagine          3.0          7           1
 P proline             6.1         14           3
 Q glutamine           4.3         10           1
 R arginine            5.2         12           2
 S serine              8.7         20           2
 T threonine           5.7         13           2
 V valine              7.8         18           2
 W tryptophan          1.3          3           1
 Y tyrosine            0.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342896 
LOC100292985          1.000   PREDICTED: hypothetical protein 
LOC100290413          1.000   PREDICTED: hypothetical protein XP_002347045 
LOC100291888          0.013   PREDICTED: hypothetical protein XP_002345445 
ARHGAP6               0.009   Rho GTPase activating protein 6 isoform 4 
ARHGAP6               0.009   Rho GTPase activating protein 6 isoform 3 
ARHGAP6               0.009   Rho GTPase activating protein 6 isoform 1 
PKD1                  0.007   polycystin 1 isoform 2 precursor 
PKD1                  0.007   polycystin 1 isoform 1 precursor 
LOC100287993          0.007   PREDICTED: hypothetical protein XP_002344255 
ANGPTL7               0.007   angiopoietin-like 7 
NIPBL                 0.007   delangin isoform B 
NIPBL                 0.007   delangin isoform A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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