Guide to the Human Genome
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Name: LOC100291888 Sequence: fasta or formatted (259aa) NCBI GI: 239757462
Description:

PREDICTED: hypothetical protein XP_002345445

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.2         29           3
 C cysteine            3.9         10           1
 D aspartate           1.9          5           1
 E glutamate           7.3         19           2
 F phenylalanine       1.9          5           1
 G glycine            11.6         30           3
 H histidine           3.1          8           1
 I isoleucine          1.5          4           1
 K lysine              3.1          8           1
 L leucine             8.5         22           2
 M methionine          0.4          1           1
 N asparagine          1.2          3           1
 P proline             6.9         18           2
 Q glutamine           4.6         12           1
 R arginine           12.4         32           3
 S serine              8.9         23           2
 T threonine           4.6         12           2
 V valine              5.0         13           1
 W tryptophan          0.8          2           1
 Y tyrosine            1.2          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002345445 
LOC100287993          0.760   PREDICTED: hypothetical protein XP_002344255 
LOC100292288          0.564   PREDICTED: hypothetical protein 
LOC100287409          0.564   PREDICTED: hypothetical protein XP_002344304 
LOC643355             0.020   PREDICTED: hypothetical protein 
LOC643355             0.020   PREDICTED: hypothetical protein 
LOC730060             0.016   PREDICTED: hypothetical protein 
LOC730060             0.016   PREDICTED: hypothetical protein 
LOC730060             0.016   PREDICTED: hypothetical protein 
CCDC88B               0.016   coiled-coil domain containing 88 
LOC100293687          0.016   PREDICTED: hypothetical protein 
CACNG8                0.014   voltage-dependent calcium channel gamma-8 subunit [H...
DCAF13                0.012   WD repeats and SOF1 domain containing 
LOC100292985          0.012   PREDICTED: hypothetical protein 
LOC728767             0.012   PREDICTED: hypothetical protein 
LOC100290413          0.012   PREDICTED: hypothetical protein XP_002347045 
LOC728767             0.012   PREDICTED: hypothetical protein 
LOC100288066          0.012   PREDICTED: hypothetical protein XP_002342896 
LOC100292576          0.012   PREDICTED: hypothetical protein 
LOC100288860          0.012   PREDICTED: hypothetical protein 
LOC100288860          0.012   PREDICTED: hypothetical protein XP_002343712 
LOC100287812          0.012   PREDICTED: hypothetical protein XP_002343253 
CSMD1                 0.012   CUB and Sushi multiple domains 1 
KIAA0644              0.012   hypothetical protein LOC9865 
HEXDC                 0.010   hexosaminidase (glycosyl hydrolase family 20, catal...
CNTNAP2               0.010   cell recognition molecule Caspr2 precursor 
LOC100292335          0.010   PREDICTED: hypothetical protein 
LOC100291529          0.010   PREDICTED: hypothetical protein XP_002347944 
LOC100289333          0.010   PREDICTED: hypothetical protein XP_002343666 
EN2                   0.010   engrailed homeobox 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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