Guide to the Human Genome
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Name: LOC100293923 Sequence: fasta or formatted (159aa) NCBI GI: 239757291
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.5         23           3
 C cysteine            2.5          4           1
 D aspartate           0.6          1           1
 E glutamate           3.8          6           2
 F phenylalanine       0.0          0           0
 G glycine            12.6         20           2
 H histidine           3.8          6           1
 I isoleucine          3.8          6           1
 K lysine              0.6          1           1
 L leucine             9.4         15           2
 M methionine          1.3          2           1
 N asparagine          1.3          2           1
 P proline            13.2         21           2
 Q glutamine           1.9          3           1
 R arginine            6.9         11           2
 S serine              8.2         13           3
 T threonine           6.9         11           1
 V valine              5.7          9           1
 W tryptophan          0.6          1           1
 Y tyrosine            2.5          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289756          0.218   PREDICTED: hypothetical protein XP_002348004 
LOC100286981          0.218   PREDICTED: hypothetical protein XP_002343724 
LOC100293055          0.030   PREDICTED: similar to COL22A1 protein 
COL22A1               0.030   collagen, type XXII, alpha 1 
KIAA1715              0.030   Lunapark 
BTBD11                0.026   BTB (POZ) domain containing 11 isoform a 
C6orf174              0.026   hypothetical protein LOC387104 
DACT1                 0.026   dapper 1 isoform 2 
DACT1                 0.026   dapper 1 isoform 1 
C17orf96              0.026   hypothetical protein LOC100170841 
ARHGAP23              0.023   Rho GTPase activating protein 23 
LOC728931             0.023   PREDICTED: similar to hCG17429 
LOC100288686          0.023   PREDICTED: hypothetical protein XP_002342615 
LOC728931             0.023   PREDICTED: similar to hCG17429 
SRCAP                 0.023   Snf2-related CBP activator protein 
KIF26A                0.023   kinesin family member 26A 
BZRAP1                0.023   peripheral benzodiazepine receptor-associated prote...
BZRAP1                0.023   peripheral benzodiazepine receptor-associated prote...
TPP1                  0.020   tripeptidyl-peptidase I preproprotein 
POU3F3                0.020   POU class 3 homeobox 3 
LOC100293379          0.020   PREDICTED: hypothetical protein 
LOC100292727          0.020   PREDICTED: hypothetical protein 
LOC100289592          0.020   PREDICTED: hypothetical protein XP_002344157 
TAF4                  0.020   TBP-associated factor 4 
FLJ37078              0.020   hypothetical protein LOC222183 
PPP1R3G               0.017   protein phosphatase 1, regulatory (inhibitor) subun...
FOXC2                 0.017   forkhead box C2 
LOC283104             0.017   PREDICTED: hypothetical protein 
LOC283104             0.017   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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