Guide to the Human Genome
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Name: LOC100293379 Sequence: fasta or formatted (229aa) NCBI GI: 239756637
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6         22           1
 C cysteine            1.7          4           1
 D aspartate           2.2          5           1
 E glutamate           4.8         11           1
 F phenylalanine       0.4          1           1
 G glycine            17.5         40           3
 H histidine           6.1         14           1
 I isoleucine          2.6          6           2
 K lysine              0.4          1           1
 L leucine            14.0         32           2
 M methionine          1.7          4           1
 N asparagine          0.4          1           1
 P proline             5.2         12           2
 Q glutamine           3.1          7           1
 R arginine           14.4         33           3
 S serine              4.4         10           2
 T threonine           0.9          2           1
 V valine              7.9         18           1
 W tryptophan          2.6          6           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289592          1.000   PREDICTED: hypothetical protein XP_002344157 
LOC100291482          0.853   PREDICTED: hypothetical protein XP_002347725 
EPB41L4B              0.018   erythrocyte membrane protein band 4.1 like 4B isofo...
EPB41L4B              0.018   erythrocyte membrane protein band 4.1 like 4B isofo...
LOC100129098          0.016   PREDICTED: hypothetical protein 
LOC100289978          0.016   PREDICTED: hypothetical protein XP_002348035 
LOC100293923          0.013   PREDICTED: hypothetical protein 
LOC728767             0.013   PREDICTED: hypothetical protein 
LOC100129098          0.013   PREDICTED: hypothetical protein 
LOC728767             0.013   PREDICTED: hypothetical protein 
FGF2                  0.011   fibroblast growth factor 2 
FBN3                  0.011   fibrillin 3 precursor 
WT1                   0.009   Wilms tumor 1 isoform D 
WT1                   0.009   Wilms tumor 1 isoform C 
WT1                   0.009   Wilms tumor 1 isoform B 
WT1                   0.009   Wilms tumor 1 isoform A 
C1orf77               0.009   small protein rich in arginine and glycine 
HLX                   0.009   H2.0-like homeobox 
SHC2                  0.009   SHC (Src homology 2 domain containing) transforming...
LOC100292090          0.009   PREDICTED: hypothetical protein XP_002345529 
LOC730351             0.009   PREDICTED: hypothetical protein 
LOC100134365          0.009   PREDICTED: similar to ankyrin repeat domain 36 [Hom...
LOC100290023          0.009   PREDICTED: hypothetical protein XP_002348147 
LOC730351             0.009   PREDICTED: hypothetical protein 
LOC100130897          0.009   PREDICTED: hypothetical protein 
LOC730351             0.009   PREDICTED: hypothetical protein 
LOC100130897          0.009   PREDICTED: hypothetical protein 
LOC730351             0.009   PREDICTED: hypothetical protein 
HPS4                  0.009   light ear protein isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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