Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TPP1 Sequence: fasta or formatted (563aa) NCBI GI: 5729770
Description:

tripeptidyl-peptidase I preproprotein

Referenced in:

Lysosomes and Related Organelles
Peptide-processing Enzymes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         39           3
 C cysteine            1.6          9           1
 D aspartate           3.6         20           2
 E glutamate           4.8         27           3
 F phenylalanine       4.6         26           1
 G glycine             9.4         53           3
 H histidine           3.4         19           2
 I isoleucine          2.5         14           1
 K lysine              1.4          8           1
 L leucine            11.2         63           3
 M methionine          0.9          5           1
 N asparagine          3.0         17           2
 P proline             7.8         44           2
 Q glutamine           5.7         32           2
 R arginine            5.2         29           2
 S serine             10.3         58           3
 T threonine           5.5         31           2
 V valine              7.3         41           2
 W tryptophan          1.8         10           1
 Y tyrosine            3.2         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tripeptidyl-peptidase I preproprotein 
COL6A1                0.011   collagen, type VI, alpha 1 precursor 
UGT2B7                0.009   UDP glucuronosyltransferase 2B7 
UGT2B17               0.007   UDP glucuronosyltransferase 2 family, polypeptide B17...
UGT2B15               0.007   UDP glycosyltransferase 2B15 
UGT2B28               0.007   UDP glucuronosyltransferase 2 family, polypeptide B2...
SEC24C                0.007   SEC24-related protein C 
SEC24C                0.007   SEC24-related protein C 
FUSSEL18              0.006   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.006   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.006   PREDICTED: functional smad suppressing element 18 [...
UGT2B11               0.006   UDP glucuronosyltransferase 2 family, polypeptide B11...
PARP6                 0.006   poly (ADP-ribose) polymerase family, member 6 
SHROOM3               0.006   shroom family member 3 protein 
UGT2B4                0.006   UDP glucuronosyltransferase 2B4 
COG7                  0.006   component of oligomeric golgi complex 7 
LOC100293923          0.005   PREDICTED: hypothetical protein 
UGT2A3                0.005   UDP glucuronosyltransferase 2 family, polypeptide A...
TNRC18                0.005   trinucleotide repeat containing 18 
UGT2A1                0.004   UDP glucuronosyltransferase 2 family, polypeptide A...
UGT2A2                0.004   UDP glucuronosyltransferase 2 family, polypeptide A...
TNRC6C                0.004   trinucleotide repeat containing 6C isoform 1 
TNRC6C                0.004   trinucleotide repeat containing 6C isoform 2 
PAX8                  0.004   paired box 8 isoform PAX8B 
PAX8                  0.004   paired box 8 isoform PAX8A 
SHROOM2               0.004   apical protein of Xenopus-like 
UGT2B10               0.004   UDP glucuronosyltransferase 2B10 isoform 2 
UGT2B10               0.004   UDP glucuronosyltransferase 2B10 isoform 1 
FAM43B                0.004   family with sequence similarity 43, member B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press