Guide to the Human Genome
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Name: LOC100291077 Sequence: fasta or formatted (241aa) NCBI GI: 239751635
Description:

PREDICTED: hypothetical protein XP_002347941

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8         26           3
 C cysteine            2.9          7           2
 D aspartate           1.2          3           1
 E glutamate           2.9          7           2
 F phenylalanine       2.1          5           1
 G glycine             6.2         15           2
 H histidine           2.9          7           1
 I isoleucine          1.7          4           1
 K lysine              1.2          3           1
 L leucine            14.9         36           3
 M methionine          1.2          3           1
 N asparagine          0.0          0           0
 P proline             5.8         14           2
 Q glutamine           5.0         12           1
 R arginine           16.6         40           3
 S serine             12.9         31           3
 T threonine           5.0         12           2
 V valine              5.0         12           1
 W tryptophan          1.7          4           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347941 
LOC100288221          1.000   PREDICTED: hypothetical protein XP_002344287 
LOC100293070          0.918   PREDICTED: hypothetical protein 
PPRC1                 0.022   peroxisome proliferator-activated receptor gamma, co...
LOC100292773          0.022   PREDICTED: hypothetical protein 
LOC100290063          0.022   PREDICTED: hypothetical protein XP_002346992 
LOC100287283          0.022   PREDICTED: hypothetical protein XP_002342840 
LOC100287283          0.022   PREDICTED: hypothetical protein 
MLLT3                 0.020   myeloid/lymphoid or mixed-lineage leukemia (trithor...
PRPF4B                0.020   serine/threonine-protein kinase PRP4K 
FIGNL2                0.018   fidgetin-like 2 
ABCB10                0.018   ATP-binding cassette, sub-family B, member 10 [Homo...
LOC100292589          0.018   PREDICTED: hypothetical protein 
LOC100290121          0.018   PREDICTED: hypothetical protein XP_002346879 
LOC100289406          0.018   PREDICTED: hypothetical protein XP_002342721 
KSR2                  0.016   kinase suppressor of ras 2 
LTBP4                 0.016   latent transforming growth factor beta binding prot...
SDF2L1                0.016   stromal cell-derived factor 2-like 1 precursor [Homo...
MYO15A                0.016   myosin XV 
SRRM2                 0.016   splicing coactivator subunit SRm300 
FLJ37078              0.013   hypothetical protein LOC222183 
TBX4                  0.013   T-box 4 
LOC100128127          0.013   PREDICTED: hypothetical protein 
BSN                   0.013   bassoon protein 
RRP1                  0.013   ribosomal RNA processing 1 homolog 
MESP1                 0.013   mesoderm posterior 1 
ZNF318                0.013   zinc finger protein 318 
ANKRD13D              0.013   ankyrin repeat domain 13 family, member D 
DYRK1B                0.011   dual-specificity tyrosine-(Y)-phosphorylation regulat...
DYRK1B                0.011   dual-specificity tyrosine-(Y)-phosphorylation regulat...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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