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Search of human proteins with 239757083
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757083 PREDICTED: similar to hCG1996962 [Homo sapiens]
(192 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757083 PREDICTED: similar to hCG1996962 [Homo sapiens] 398 e-111
gi|239751590 PREDICTED: hypothetical protein XP_002347921 [Homo ... 397 e-111
gi|239746102 PREDICTED: hypothetical protein XP_002343657 [Homo ... 397 e-111
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 45 3e-05
gi|119943102 CREB binding protein isoform b [Homo sapiens] 44 8e-05
gi|119943104 CREB binding protein isoform a [Homo sapiens] 44 8e-05
gi|92859670 solute carrier family 6 (neurotransmitter transporte... 43 1e-04
gi|153792110 HEG homolog 1 [Homo sapiens] 39 0.004
gi|63252863 BTB (POZ) domain containing 12 [Homo sapiens] 38 0.006
gi|169215850 PREDICTED: transmembrane protein 46-like [Homo sapi... 35 0.039
gi|55742678 glucocorticoid induced transcript 1 [Homo sapiens] 35 0.039
gi|113429443 PREDICTED: transmembrane protein 46-like [Homo sapi... 35 0.051
gi|91208420 bassoon protein [Homo sapiens] 35 0.051
gi|87298937 centrosomal protein 110kDa [Homo sapiens] 35 0.051
gi|16507243 GSK-3 binding protein FRAT2 [Homo sapiens] 34 0.067
gi|83367077 mucin 16 [Homo sapiens] 34 0.087
gi|188536004 zinc finger protein 469 [Homo sapiens] 34 0.087
gi|148612835 zinc finger protein 207 isoform c [Homo sapiens] 34 0.087
gi|156416026 zinc finger protein 219 [Homo sapiens] 34 0.087
gi|156415998 zinc finger protein 219 [Homo sapiens] 34 0.087
gi|4508017 zinc finger protein 207 isoform a [Homo sapiens] 34 0.087
gi|156415996 zinc finger protein 219 [Homo sapiens] 34 0.087
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 33 0.11
gi|134276943 separase [Homo sapiens] 33 0.11
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 33 0.11
gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo ... 33 0.15
gi|239746003 PREDICTED: hypothetical protein XP_002344191 [Homo ... 33 0.15
gi|51464815 PREDICTED: similar to hCG1745223 [Homo sapiens] 33 0.15
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 33 0.19
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 33 0.19
>gi|239757083 PREDICTED: similar to hCG1996962 [Homo sapiens]
Length = 192
Score = 398 bits (1023), Expect = e-111
Identities = 192/192 (100%), Positives = 192/192 (100%)
Query: 1 MQRGPLSPSPSDGLGALGTTYPGVHRGQSMAGLRVPAFNAGLRAITPSRAETQHPETTSS 60
MQRGPLSPSPSDGLGALGTTYPGVHRGQSMAGLRVPAFNAGLRAITPSRAETQHPETTSS
Sbjct: 1 MQRGPLSPSPSDGLGALGTTYPGVHRGQSMAGLRVPAFNAGLRAITPSRAETQHPETTSS 60
Query: 61 GMHREPLSSTPIAHCESQRRGTTGPGMPCAPRAQRREAVGVLVAPPRVPPRTPRRGSLGA 120
GMHREPLSSTPIAHCESQRRGTTGPGMPCAPRAQRREAVGVLVAPPRVPPRTPRRGSLGA
Sbjct: 61 GMHREPLSSTPIAHCESQRRGTTGPGMPCAPRAQRREAVGVLVAPPRVPPRTPRRGSLGA 120
Query: 121 AVFSSSDLTFDAEAQGQVRRPRPAQAVGPSGARRPEAPGWFRKSDRSGRAGTGAWSQWPQ 180
AVFSSSDLTFDAEAQGQVRRPRPAQAVGPSGARRPEAPGWFRKSDRSGRAGTGAWSQWPQ
Sbjct: 121 AVFSSSDLTFDAEAQGQVRRPRPAQAVGPSGARRPEAPGWFRKSDRSGRAGTGAWSQWPQ 180
Query: 181 ANPDEQQPQVAY 192
ANPDEQQPQVAY
Sbjct: 181 ANPDEQQPQVAY 192
>gi|239751590 PREDICTED: hypothetical protein XP_002347921 [Homo
sapiens]
Length = 192
Score = 397 bits (1019), Expect = e-111
Identities = 191/192 (99%), Positives = 191/192 (99%)
Query: 1 MQRGPLSPSPSDGLGALGTTYPGVHRGQSMAGLRVPAFNAGLRAITPSRAETQHPETTSS 60
MQRGPLSPSPSDGLGALGTTYPGVHRGQSMAGLRVPAFNAGLRAITPSRAETQHPETTSS
Sbjct: 1 MQRGPLSPSPSDGLGALGTTYPGVHRGQSMAGLRVPAFNAGLRAITPSRAETQHPETTSS 60
Query: 61 GMHREPLSSTPIAHCESQRRGTTGPGMPCAPRAQRREAVGVLVAPPRVPPRTPRRGSLGA 120
GMHREPLSSTPIAHCESQRRGTTGPGMPCAPRAQRREAVGVLVAPPRVPPRTPRRGSLG
Sbjct: 61 GMHREPLSSTPIAHCESQRRGTTGPGMPCAPRAQRREAVGVLVAPPRVPPRTPRRGSLGV 120
Query: 121 AVFSSSDLTFDAEAQGQVRRPRPAQAVGPSGARRPEAPGWFRKSDRSGRAGTGAWSQWPQ 180
AVFSSSDLTFDAEAQGQVRRPRPAQAVGPSGARRPEAPGWFRKSDRSGRAGTGAWSQWPQ
Sbjct: 121 AVFSSSDLTFDAEAQGQVRRPRPAQAVGPSGARRPEAPGWFRKSDRSGRAGTGAWSQWPQ 180
Query: 181 ANPDEQQPQVAY 192
ANPDEQQPQVAY
Sbjct: 181 ANPDEQQPQVAY 192
>gi|239746102 PREDICTED: hypothetical protein XP_002343657 [Homo
sapiens]
Length = 192
Score = 397 bits (1019), Expect = e-111
Identities = 191/192 (99%), Positives = 191/192 (99%)
Query: 1 MQRGPLSPSPSDGLGALGTTYPGVHRGQSMAGLRVPAFNAGLRAITPSRAETQHPETTSS 60
MQRGPLSPSPSDGLGALGTTYPGVHRGQSMAGLRVPAFNAGLRAITPSRAETQHPETTSS
Sbjct: 1 MQRGPLSPSPSDGLGALGTTYPGVHRGQSMAGLRVPAFNAGLRAITPSRAETQHPETTSS 60
Query: 61 GMHREPLSSTPIAHCESQRRGTTGPGMPCAPRAQRREAVGVLVAPPRVPPRTPRRGSLGA 120
GMHREPLSSTPIAHCESQRRGTTGPGMPCAPRAQRREAVGVLVAPPRVPPRTPRRGSLG
Sbjct: 61 GMHREPLSSTPIAHCESQRRGTTGPGMPCAPRAQRREAVGVLVAPPRVPPRTPRRGSLGV 120
Query: 121 AVFSSSDLTFDAEAQGQVRRPRPAQAVGPSGARRPEAPGWFRKSDRSGRAGTGAWSQWPQ 180
AVFSSSDLTFDAEAQGQVRRPRPAQAVGPSGARRPEAPGWFRKSDRSGRAGTGAWSQWPQ
Sbjct: 121 AVFSSSDLTFDAEAQGQVRRPRPAQAVGPSGARRPEAPGWFRKSDRSGRAGTGAWSQWPQ 180
Query: 181 ANPDEQQPQVAY 192
ANPDEQQPQVAY
Sbjct: 181 ANPDEQQPQVAY 192
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 45.4 bits (106), Expect = 3e-05
Identities = 37/117 (31%), Positives = 47/117 (40%), Gaps = 5/117 (4%)
Query: 62 MHREPLSSTPIAHCESQRRGTTGPGMPCAPRAQRREAVGVLVAPPRVPPRTP-RRGSLGA 120
+ R P P A + PG P +PRA R G L A P P P RR S +
Sbjct: 758 VRRPPPGPAPAAASPGPPPPASPPGAPASPRAPRTSPYGGLPAAPLAGPALPARRLSRAS 817
Query: 121 AVFSSSDLTFDAEAQGQVRRPRPAQA----VGPSGARRPEAPGWFRKSDRSGRAGTG 173
S+S + A G RPA + +GP+ A R AP R+ S A G
Sbjct: 818 RPLSASQPSLPHGAPGPAASTRPASSSTPRLGPTPAARAAAPSPDRRDSASPGAAGG 874
>gi|119943102 CREB binding protein isoform b [Homo sapiens]
Length = 2404
Score = 43.9 bits (102), Expect = 8e-05
Identities = 43/148 (29%), Positives = 63/148 (42%), Gaps = 6/148 (4%)
Query: 11 SDGLGALGTTYPGVHRGQSMAGLRVPAFNAGLRAITPSRAETQHPETTSSGMHREPLSST 70
S G ++G P G S + A L + P ++ P T S +H P ++
Sbjct: 764 SSGAMSVGMGQPPAQTGVSQGQVPGAALPNPLNMLGPQASQLPCPPVTQSPLHPTPPPAS 823
Query: 71 PIAHCESQRRGTTGPGM-PCAPRAQRREAVGVLVAPPRVPPRTPRRGSLGAAVFSSSDLT 129
A S + TT PGM P P A + + V + + P TP GS+ +A + S T
Sbjct: 824 TAAGMPSLQH-TTPPGMTPPQPAAPTQPSTPVS-SSGQTPTPTP--GSVPSATQTQSTPT 879
Query: 130 FDAEAQGQVRRPRPAQAVGPSGARRPEA 157
A AQ QV P+P V P P++
Sbjct: 880 VQAAAQAQV-TPQPQTPVQPPSVATPQS 906
>gi|119943104 CREB binding protein isoform a [Homo sapiens]
Length = 2442
Score = 43.9 bits (102), Expect = 8e-05
Identities = 43/148 (29%), Positives = 63/148 (42%), Gaps = 6/148 (4%)
Query: 11 SDGLGALGTTYPGVHRGQSMAGLRVPAFNAGLRAITPSRAETQHPETTSSGMHREPLSST 70
S G ++G P G S + A L + P ++ P T S +H P ++
Sbjct: 802 SSGAMSVGMGQPPAQTGVSQGQVPGAALPNPLNMLGPQASQLPCPPVTQSPLHPTPPPAS 861
Query: 71 PIAHCESQRRGTTGPGM-PCAPRAQRREAVGVLVAPPRVPPRTPRRGSLGAAVFSSSDLT 129
A S + TT PGM P P A + + V + + P TP GS+ +A + S T
Sbjct: 862 TAAGMPSLQH-TTPPGMTPPQPAAPTQPSTPVS-SSGQTPTPTP--GSVPSATQTQSTPT 917
Query: 130 FDAEAQGQVRRPRPAQAVGPSGARRPEA 157
A AQ QV P+P V P P++
Sbjct: 918 VQAAAQAQV-TPQPQTPVQPPSVATPQS 944
>gi|92859670 solute carrier family 6 (neurotransmitter transporter,
glycine), member 5 [Homo sapiens]
Length = 797
Score = 43.1 bits (100), Expect = 1e-04
Identities = 35/94 (37%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 85 PGMPCAPRAQRREAVGVLVAPPRVPPRTPRRGSLGAAVFSSSDL-TFDAEAQG----QVR 139
P PCAPR + + APP PPR PR S GA F S+D +AE G ++
Sbjct: 26 PDGPCAPRTSPEQELPAAAAPP--PPRVPRSASTGAQTFQSADARACEAERPGVGSCKLS 83
Query: 140 RPRPAQAVGPSGARRPEAPGWFRKSDRSGRAGTG 173
PR AQA + EA G + S G +G G
Sbjct: 84 SPR-AQAASAALRDLREAQG-AQASPPPGSSGPG 115
>gi|153792110 HEG homolog 1 [Homo sapiens]
Length = 1381
Score = 38.5 bits (88), Expect = 0.004
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 17/108 (15%)
Query: 101 VLVAPP-----RVPPRTPRRGSLGAAVFSSSDLTFDAEAQGQVRRPR--PAQAVGPS--- 150
+L+ PP R PP +P R +L A + + L E + + P P + GP+
Sbjct: 20 LLLLPPAAPGTRDPPPSPARRALSLAPLAGAGLELQLERRPEREPPPTPPRERRGPATPG 79
Query: 151 -GARRPEAPGWFRKSDRSGRAGTG-----AWSQWPQANPDEQQPQVAY 192
R PE PG + SGRA G AW WP++N + + +
Sbjct: 80 PSYRAPE-PGAATQRGPSGRAPRGGSADAAWKHWPESNTEAHVENITF 126
>gi|63252863 BTB (POZ) domain containing 12 [Homo sapiens]
Length = 1834
Score = 37.7 bits (86), Expect = 0.006
Identities = 36/115 (31%), Positives = 49/115 (42%), Gaps = 24/115 (20%)
Query: 63 HREPLSSTPIAHCESQRRGTTGPGMPCAPRAQRREAV--------GVLVAPP-------- 106
H EPLS PI H +R TGP +P + EA G+L P
Sbjct: 1429 HMEPLSPIPIDHWNLER---TGPLSTSSPSRRMNEAADSRDCRSPGLLDTTPIRGSCTTQ 1485
Query: 107 -RVPPRTPRRGSLGAA--VFSSSDL--TFDAEAQGQVRRPRPAQAVGPSGARRPE 156
++ ++ GSLG + F +S L +D E Q P PAQ GA++PE
Sbjct: 1486 RKLQEKSSGAGSLGNSRPSFLNSALWDVWDGEEQRPPETPPPAQMPSAGGAQKPE 1540
>gi|169215850 PREDICTED: transmembrane protein 46-like [Homo
sapiens]
Length = 547
Score = 35.0 bits (79), Expect = 0.039
Identities = 44/155 (28%), Positives = 59/155 (38%), Gaps = 30/155 (19%)
Query: 8 PSPSDGLGALGTTY-----------PGVHRGQSMAGLRVPAFNAGL-RAITPSRAETQHP 55
P P G G G PG HR S GLR G+ R I PSR P
Sbjct: 257 PGPVPGAGGCGEDRLGSQPRPENGPPGSHRTASGRGLRRGDSEGGVNRGIGPSRVSLLAP 316
Query: 56 ETTSSGMHREPLSSTPIAHCESQRRGTTGPGMPCAPRAQRREAVGVLVAPPRVPPRTPRR 115
+ ++ L++ P RG+ PG P PR Q + + P T +
Sbjct: 317 D-------KKRLNNAP--------RGSAAPGPPRGPRLQ--GGGSLTLQPDYAKYATFKA 359
Query: 116 GSLGAAVFSSSDLTFDAEAQGQVRRPRPAQAVGPS 150
+L AAV + + + + RPRPA A PS
Sbjct: 360 AALKAAV-PRARRSANRLPRPSGPRPRPAPARSPS 393
>gi|55742678 glucocorticoid induced transcript 1 [Homo sapiens]
Length = 547
Score = 35.0 bits (79), Expect = 0.039
Identities = 41/133 (30%), Positives = 52/133 (39%), Gaps = 16/133 (12%)
Query: 48 SRAETQHPETTSSGMHREPLSSTP-IAHCESQRRGTTGPGMPCAPRAQRREAVGVLVAPP 106
S + +Q P S M R S P +A S G G+ CAP A G L+ P
Sbjct: 9 SSSSSQTPHPPSQRMRRSAAGSPPAVAAAGSGNGAGGGGGVGCAPAA----GAGRLLQPI 64
Query: 107 R--VP-------PRTPRRGSLGAAVFSSSDLTFDAEAQG-QVRRPRPAQAVGPSGARRPE 156
R VP +P R + AA S L A+G P P A P+ + P
Sbjct: 65 RATVPYQLLRGSQHSPTRPPVAAAAASLGSLPGPGAARGPSPSSPTPPAAAAPA-EQAPR 123
Query: 157 APGWFRKSDRSGR 169
A G R+S S R
Sbjct: 124 AKGRPRRSPESHR 136
>gi|113429443 PREDICTED: transmembrane protein 46-like [Homo
sapiens]
Length = 492
Score = 34.7 bits (78), Expect = 0.051
Identities = 51/199 (25%), Positives = 69/199 (34%), Gaps = 40/199 (20%)
Query: 8 PSPSDGLGALGTTY-----------PGVHRGQSMAGLRVPAFNAGL-RAITPSRAETQHP 55
P P G G G PG HR S GLR G+ R I PSR P
Sbjct: 257 PGPVPGAGGCGEDRLGSQPRPENGPPGSHRTASGRGLRRGDSEGGVNRGIGPSRVSLLAP 316
Query: 56 ETTSSGMHREPLSSTPIAHCESQRRGTTGPGMPCAPRAQRREAVGVLVAPPRVPPRTPRR 115
+ ++ L++ P RG+ PG P PR Q + + P T +
Sbjct: 317 D-------KKRLNNAP--------RGSAAPGPPRGPRLQ--GGGSLTLQPDYAKYATFKA 359
Query: 116 GSLGAAVFSSSDLTFDAEAQGQVRRPRPAQAVGPSGARRPEAPG------WFRKSDRSGR 169
+L AA + D A R PA+A PS P+ P W +
Sbjct: 360 AALKAAEAAPRDFCQRFPALEPSPRQPPARAPRPS----PDLPAPLDACPW-APPVYAPP 414
Query: 170 AGTGAWSQWPQANPDEQQP 188
A G ++ W + P P
Sbjct: 415 AAPGPYAAWTSSRPARPAP 433
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 34.7 bits (78), Expect = 0.051
Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 8/116 (6%)
Query: 47 PSRAETQHPETTSSGMH---REPLSSTPIAHCESQRRGTTGPGMPCAPRAQRREAVGVLV 103
PS A ++ P+T + P + A + Q + TT P A + + G
Sbjct: 3768 PSGAASRQPQTQQQQQGLGLQPPQQALTQARLQQQSQPTTRGSAPAASQPAGKPQPGPST 3827
Query: 104 APPRVPPRTPRRGSLGAAVFSSSDLTFDAEAQGQVRRPRPAQAVGPSGARRPEAPG 159
A P PR A + S T A QG+ + +PA GP+G + PG
Sbjct: 3828 ATGPQPAGPPR-----AEQTNGSKGTAKAPQQGRAPQAQPAPGPGPAGVKAGARPG 3878
Score = 27.3 bits (59), Expect = 8.2
Identities = 49/182 (26%), Positives = 66/182 (36%), Gaps = 34/182 (18%)
Query: 2 QRGPLSPSPSDGL----GALGT-TYPGVHRGQSMAGLRVPAFNAG--LRAITPSRAETQH 54
Q GP +P + G LG T+P H PA G +R + PS A +
Sbjct: 2130 QHGPGLSAPQSLVPLRPGLLGNPTFPEGHPSPGNLAQYGPAAGQGTAVRQLLPSTATVRA 2189
Query: 55 PETTSSGMHREPLSST-PIAHCESQRRGTTGPGMPCAPRAQ----RREAVGVLVAPP--- 106
+ P+++T PI TT P P + R A G + A P
Sbjct: 2190 ADGMIYSTINTPIAATLPI---------TTQPASVLRPMVRGGMYRPYASGGITAVPLTS 2240
Query: 107 --RVPPRTPR--RGSLGA------AVFSSSDLTFDAEAQGQVRRPRPAQAVGPSGARRPE 156
RVP PR G G + F + AE + +P A+A G G RPE
Sbjct: 2241 LTRVPMIAPRVPLGPTGLYRYPAPSRFPIASSVPPAEGPVYLGKPAAAKAPGAGGPSRPE 2300
Query: 157 AP 158
P
Sbjct: 2301 MP 2302
>gi|87298937 centrosomal protein 110kDa [Homo sapiens]
Length = 2325
Score = 34.7 bits (78), Expect = 0.051
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 9/89 (10%)
Query: 109 PPRTPRRGSLGAAVFSSSDLTFDAEAQGQVRRPRPAQAVGPSGARRPEAPG-WFRKSDRS 167
PP + + S + S + A VR+PRP Q G G++ P A G W RS
Sbjct: 1148 PPPSSKVSSHSSQATKDSGVGLKYSASTPVRKPRPGQQDGKEGSQPPPASGYWVYSPIRS 1207
Query: 168 G--------RAGTGAWSQWPQANPDEQQP 188
G A +G SQ D+++P
Sbjct: 1208 GLHKLFPSRDADSGGDSQEESELDDQEEP 1236
>gi|16507243 GSK-3 binding protein FRAT2 [Homo sapiens]
Length = 233
Score = 34.3 bits (77), Expect = 0.067
Identities = 33/106 (31%), Positives = 38/106 (35%), Gaps = 13/106 (12%)
Query: 85 PGMPCAPRAQRREAVGVLVA--------PPRVPPRTPRRGSLGAAVFSSSDLTFDAEAQG 136
P PCAP A G L A PP VP P + S L +G
Sbjct: 60 PASPCAPPGVPLRAPGPLAAAVPADKARPPAVPLLLPPASAETVGPAPSGALRCALGDRG 119
Query: 137 QVR-RPRP----AQAVGPSGARRPEAPGWFRKSDRSGRAGTGAWSQ 177
+VR R P A GPS P GW R + S R W+Q
Sbjct: 120 RVRGRAAPYCVAEVAAGPSALPGPCRRGWLRDAVTSRRLQQRRWTQ 165
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 33.9 bits (76), Expect = 0.087
Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 6/107 (5%)
Query: 7 SPSPSDGLGALGTTYPGVHRGQSMAGLRVPAFNAGLRAITPSRAETQH-PETTSSGMHRE 65
SP P + A+ TT + L VP+ P+ +ET + PETT++ +
Sbjct: 11524 SPGP-EASSAVSTTTISPDMSDLVTSL-VPSSGTDTSTTFPTLSETPYEPETTATWLTHP 11581
Query: 66 PLSSTPIAHCE---SQRRGTTGPGMPCAPRAQRREAVGVLVAPPRVP 109
+ST ++ S R T P M +P R V PP +P
Sbjct: 11582 AETSTTVSGTIPNFSHRGSDTAPSMVTSPGVDTRSGVPTTTIPPSIP 11628
Score = 33.5 bits (75), Expect = 0.11
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 19/120 (15%)
Query: 6 LSPSPSDG-LGALGTTYPGVHRGQSMAGLRVPAFNAGLRAITPSRAETQHPETTSSGMHR 64
L+PSP + A T+PG G F +R + S P+T +S +
Sbjct: 11649 LTPSPGEPETTASSATHPGTQTG----------FTVPIRTVPSSE-----PDTMASWVTH 11693
Query: 65 EPLSSTPIAHCESQRRGTT---GPGMPCAPRAQRREAVGVLVAPPRVPPRTPRRGSLGAA 121
P +STP++ S ++ P M +PR + AV ++P T + S GAA
Sbjct: 11694 PPQTSTPVSRTTSSFSHSSPDATPVMATSPRTEASSAVLTTISPGAPEMVTSQITSSGAA 11753
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 33.9 bits (76), Expect = 0.087
Identities = 45/196 (22%), Positives = 70/196 (35%), Gaps = 37/196 (18%)
Query: 7 SPSPSDGLGALGTTYPGVHRGQSMAGLRVPAFNAGLRAITPSRAETQHPETTSSGMHREP 66
S SP G G + P GQ L+ + PSR+ PE + +
Sbjct: 3707 SGSPRPGTKTGGGSQPQPASGQ----LQSETATTPAKPSFPSRSPA--PERLPARAQAKS 3760
Query: 67 LSSTPIAHCESQRRGTTGPG-------------MPCAPRAQRREAVGVLVAPPRVPPRTP 113
+ P E G+ GP +P R++ + G + P PPRTP
Sbjct: 3761 CTKGPREAGEQGPHGSLGPKEKGESSTKRKKGQVPGPARSESVGSFGRAPSAPDKPPRTP 3820
Query: 114 RRGSLGAAVFSSSDLTFDAEAQGQVRRPRPAQAVGPSGARRPEAPGWFRKSDRSGRAGTG 173
R+ + + V + +PRP P +R PG ++ DR G+A
Sbjct: 3821 RKQATPSRVLPTK------PKPNSQNKPRP-----PPSEQRKAEPGHTQRKDRLGKA--- 3866
Query: 174 AWSQWPQANPDEQQPQ 189
+PQ P + P+
Sbjct: 3867 ----FPQGRPLLRPPK 3878
Score = 29.3 bits (64), Expect = 2.2
Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 3/101 (2%)
Query: 77 SQRRGTTGPGMPCAPRAQRREAVGVLVAPPRVPPRTPRRGSLGAAVFSSSDLTFDAEAQG 136
SQ G+ PG +Q + A G L + P P S A L A+A+
Sbjct: 3704 SQGSGSPRPGTKTGGGSQPQPASGQLQSETATTPAKPSFPSRSPA---PERLPARAQAKS 3760
Query: 137 QVRRPRPAQAVGPSGARRPEAPGWFRKSDRSGRAGTGAWSQ 177
+ PR A GP G+ P+ G + G+ A S+
Sbjct: 3761 CTKGPREAGEQGPHGSLGPKEKGESSTKRKKGQVPGPARSE 3801
>gi|148612835 zinc finger protein 207 isoform c [Homo sapiens]
Length = 494
Score = 33.9 bits (76), Expect = 0.087
Identities = 45/176 (25%), Positives = 61/176 (34%), Gaps = 38/176 (21%)
Query: 5 PLSPSPSDGLGALGTTYPGVHRGQSMAGLRVPAFNAGLRAITPSRAETQHPETTSSGMHR 64
PL PS G +GT S A + +A +A+ PS A+ Q G
Sbjct: 269 PLFPSA----GQMGTPVTS----SSTASSNSESLSASSKALFPSTAQAQAAVQGPVGTDF 320
Query: 65 EPLSSTPIAHCESQRRGTTGPGMPCAP-----RAQRREAVGVLVAPPRV-----PPRTPR 114
+PL+STP TT P P P A A P P
Sbjct: 321 KPLNSTPAT--------TTEPPKPTFPAYTQSTASTTSTTNSTAAKPAASITSKPATLTT 372
Query: 115 RGSLGAAVFSSSDLTFDAEAQGQVRR-----PRPAQA------VGPSGARRPEAPG 159
+ + D++ + E + Q+ + PRP QA VGP G P PG
Sbjct: 373 TSATSKLIHPDEDISLE-ERRAQLPKYQRNLPRPGQAPIGNPPVGPIGGMMPPQPG 427
Score = 30.0 bits (66), Expect = 1.3
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 15/77 (19%)
Query: 85 PGMPCAPRAQRREAVGVLVAPPRV--------PPRT----PRRGSLGAAVFSSSDLTFDA 132
PG+P +AQ A G+L PP PP T P G +G V SSS + ++
Sbjct: 232 PGIPPMTQAQAVSAPGILNRPPAPTATVPAPQPPVTKPLFPSAGQMGTPVTSSSTASSNS 291
Query: 133 E---AQGQVRRPRPAQA 146
E A + P AQA
Sbjct: 292 ESLSASSKALFPSTAQA 308
>gi|156416026 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 33.9 bits (76), Expect = 0.087
Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Query: 92 RAQRREAVGVLVAPPRVPPRTPRRGSLGAAVFSSSDLTFDAEAQGQVRRPRPAQAVGPSG 151
R R + G PP PP +RGS + S RP P+ GP
Sbjct: 547 RHHREQRSGAGPGPPPEPPPPSQRGSAPQSGAKPSPQPATWVEGASSPRP-PSSGAGPGS 605
Query: 152 ARRPEAPGWFRKSDRSGRA 170
R+P +PG ++ R G A
Sbjct: 606 RRKPASPGRTLRNGRGGEA 624
>gi|156415998 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 33.9 bits (76), Expect = 0.087
Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Query: 92 RAQRREAVGVLVAPPRVPPRTPRRGSLGAAVFSSSDLTFDAEAQGQVRRPRPAQAVGPSG 151
R R + G PP PP +RGS + S RP P+ GP
Sbjct: 547 RHHREQRSGAGPGPPPEPPPPSQRGSAPQSGAKPSPQPATWVEGASSPRP-PSSGAGPGS 605
Query: 152 ARRPEAPGWFRKSDRSGRA 170
R+P +PG ++ R G A
Sbjct: 606 RRKPASPGRTLRNGRGGEA 624
>gi|4508017 zinc finger protein 207 isoform a [Homo sapiens]
Length = 478
Score = 33.9 bits (76), Expect = 0.087
Identities = 45/176 (25%), Positives = 61/176 (34%), Gaps = 38/176 (21%)
Query: 5 PLSPSPSDGLGALGTTYPGVHRGQSMAGLRVPAFNAGLRAITPSRAETQHPETTSSGMHR 64
PL PS G +GT S A + +A +A+ PS A+ Q G
Sbjct: 253 PLFPSA----GQMGTPVTS----SSTASSNSESLSASSKALFPSTAQAQAAVQGPVGTDF 304
Query: 65 EPLSSTPIAHCESQRRGTTGPGMPCAP-----RAQRREAVGVLVAPPRV-----PPRTPR 114
+PL+STP TT P P P A A P P
Sbjct: 305 KPLNSTPAT--------TTEPPKPTFPAYTQSTASTTSTTNSTAAKPAASITSKPATLTT 356
Query: 115 RGSLGAAVFSSSDLTFDAEAQGQVRR-----PRPAQA------VGPSGARRPEAPG 159
+ + D++ + E + Q+ + PRP QA VGP G P PG
Sbjct: 357 TSATSKLIHPDEDISLE-ERRAQLPKYQRNLPRPGQAPIGNPPVGPIGGMMPPQPG 411
Score = 30.0 bits (66), Expect = 1.3
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 15/77 (19%)
Query: 85 PGMPCAPRAQRREAVGVLVAPPRV--------PPRT----PRRGSLGAAVFSSSDLTFDA 132
PG+P +AQ A G+L PP PP T P G +G V SSS + ++
Sbjct: 216 PGIPPMTQAQAVSAPGILNRPPAPTATVPAPQPPVTKPLFPSAGQMGTPVTSSSTASSNS 275
Query: 133 E---AQGQVRRPRPAQA 146
E A + P AQA
Sbjct: 276 ESLSASSKALFPSTAQA 292
>gi|156415996 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 33.9 bits (76), Expect = 0.087
Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Query: 92 RAQRREAVGVLVAPPRVPPRTPRRGSLGAAVFSSSDLTFDAEAQGQVRRPRPAQAVGPSG 151
R R + G PP PP +RGS + S RP P+ GP
Sbjct: 547 RHHREQRSGAGPGPPPEPPPPSQRGSAPQSGAKPSPQPATWVEGASSPRP-PSSGAGPGS 605
Query: 152 ARRPEAPGWFRKSDRSGRA 170
R+P +PG ++ R G A
Sbjct: 606 RRKPASPGRTLRNGRGGEA 624
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 33.5 bits (75), Expect = 0.11
Identities = 43/159 (27%), Positives = 55/159 (34%), Gaps = 20/159 (12%)
Query: 5 PLSPSPSDGLGALGTT-YPGVHRGQSMAGLRVPAFNAGLRAITPSRAETQHPETTSSGMH 63
P +P P G G PG + GL P+ G + + + E P M
Sbjct: 946 PGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPP----GPMG 1001
Query: 64 REPLSSTPIAHCESQRRGTTG----PGMPCAPRAQRREAVGVLVAPPRVPPRTPRRGSLG 119
L+ P ES R G G PG +P A+ PP P G +G
Sbjct: 1002 PPGLAGPP---GESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVG 1058
Query: 120 AAVFSSSDLTFDAEAQGQVRRPRPAQAVGPSGARRPEAP 158
A S +G+ PA VGP GAR P P
Sbjct: 1059 PAGKSGD--------RGETGPAGPAGPVGPVGARGPAGP 1089
Score = 28.1 bits (61), Expect = 4.8
Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 6/85 (7%)
Query: 80 RGTTGPGMPCAPRAQR-REAVGV---LVAPPRVPPRTPRRGSLGAAVFSSSDLTFDAEAQ 135
+G TGP P P R+ + L PP PP P LG +D ++
Sbjct: 114 KGDTGPRGPRGPAGPPGRDGIPGQPGLPGPPG-PPGPPGPPGLGGNFAPQLSYGYDEKST 172
Query: 136 GQVRRPRPAQAVGPSGARRPE-APG 159
G + P P GP G P APG
Sbjct: 173 GGISVPGPMGPSGPRGLPGPPGAPG 197
>gi|134276943 separase [Homo sapiens]
Length = 2120
Score = 33.5 bits (75), Expect = 0.11
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 47 PSRAETQHPETTSSGMHREPLSSTPIAHCESQRRGTTGPGMPCAPRAQRREAVGVLVAPP 106
PS+ + Q SG R+ L+S P+ + ++G G G+PC P+ R + A P
Sbjct: 1307 PSKTQGQK----RSGRGRQKLASAPLRLNNTSQKGLEGRGLPCTPKPPDR----IRQAGP 1358
Query: 107 RVP 109
VP
Sbjct: 1359 HVP 1361
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 33.5 bits (75), Expect = 0.11
Identities = 31/108 (28%), Positives = 39/108 (36%), Gaps = 20/108 (18%)
Query: 63 HREPLSSTPIAHCESQRRGTTGPGMPCAPRAQRREAVGVLVAPPRVPPRTPRRGSLGAAV 122
++ +S A + RRG T P P APR A APP P P + AA
Sbjct: 87 YKGSISYRNAARVQPPRRGATPPAPPRAPRG--APAAAAAAAPPPTPAPPPPPAPVAAA- 143
Query: 123 FSSSDLTFDAEAQGQVRRPRPAQAVGPSGARRPEAPGWFRKSDRSGRA 170
R PR A A A P +PG + R+ RA
Sbjct: 144 -------------APARAPRAAAA----AATAPPSPGPAQPGPRAQRA 174
>gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo
sapiens]
Length = 459
Score = 33.1 bits (74), Expect = 0.15
Identities = 57/220 (25%), Positives = 74/220 (33%), Gaps = 54/220 (24%)
Query: 2 QRGPLSPSPSDGL----GALGTTYPGVHRGQSMAGLRVPAFNAGLRAITPSRAETQHPET 57
QR P SP G G T G G++ + P A +PS A+ P +
Sbjct: 119 QRSPARASPGGGFTSAEGKRKTRPAGRGGGRTRRVVAAPESAAAAPGRSPSPAD---PGS 175
Query: 58 TSSGMHREPLSSTPIAHCESQRRGTTGPGMPCAPRAQRREAVGVLVAP------------ 105
TSS + P A S+R P AP A R P
Sbjct: 176 TSSA------TRVPRARRSSRRALQPRHAAPDAPGAPSRSTSQATPPPAPRFPASRRPGA 229
Query: 106 PRVPPRTPRR---GSLGAAVFSSSDLTFD-------AEAQGQVRRPRPAQAVGPSGARRP 155
PR+ RT +R GS +V S D+T A+ QV P + P R P
Sbjct: 230 PRLLSRTRQRELGGSAAPSVAFSGDVTLSLERGPASAKPPPQVLTAEPREDATPGEGRLP 289
Query: 156 E--------------APGWFRK-----SDRSGRAGTGAWS 176
+ P F + R GR GTG+WS
Sbjct: 290 DFEKQPHSPRERLDPPPAPFGQMILILGFRVGRGGTGSWS 329
>gi|239746003 PREDICTED: hypothetical protein XP_002344191 [Homo
sapiens]
Length = 459
Score = 33.1 bits (74), Expect = 0.15
Identities = 57/220 (25%), Positives = 74/220 (33%), Gaps = 54/220 (24%)
Query: 2 QRGPLSPSPSDGL----GALGTTYPGVHRGQSMAGLRVPAFNAGLRAITPSRAETQHPET 57
QR P SP G G T G G++ + P A +PS A+ P +
Sbjct: 119 QRSPARASPGGGFTSAEGKRKTRPAGRGGGRTRRVVAAPESAAAAPGRSPSPAD---PGS 175
Query: 58 TSSGMHREPLSSTPIAHCESQRRGTTGPGMPCAPRAQRREAVGVLVAP------------ 105
TSS + P A S+R P AP A R P
Sbjct: 176 TSSA------TRVPRARRSSRRALQPRHAAPDAPGAPSRSTSQATPPPAPRFPASRRPGA 229
Query: 106 PRVPPRTPRR---GSLGAAVFSSSDLTFD-------AEAQGQVRRPRPAQAVGPSGARRP 155
PR+ RT +R GS +V S D+T A+ QV P + P R P
Sbjct: 230 PRLLSRTRQRELGGSAAPSVAFSGDVTLSLERGPASAKPPPQVLTAEPREDATPGEGRLP 289
Query: 156 E--------------APGWFRK-----SDRSGRAGTGAWS 176
+ P F + R GR GTG+WS
Sbjct: 290 DFEKQPHSPRERLDPPPAPFGQMILILGFRVGRGGTGSWS 329
>gi|51464815 PREDICTED: similar to hCG1745223 [Homo sapiens]
Length = 319
Score = 33.1 bits (74), Expect = 0.15
Identities = 39/154 (25%), Positives = 53/154 (34%), Gaps = 22/154 (14%)
Query: 34 RVPAFNAGLRAITPSRAETQHPETTSSGMHREPLSSTPIAHCESQRRGTTGPGMPCAPRA 93
++P +G P + + + S + TP +R T P P R
Sbjct: 97 QIPLNISGSSEPPPQKGDAKLKGVRMSTLQTAETKPTPTCPRRQRRWLRTTPHPPPPTRQ 156
Query: 94 QRREAVGVLVAPPRVP----PRTPRRGSLGAAVFS----------SSDLTFDAEAQGQVR 139
RE G + PR P P P A+V S+D A QG+V
Sbjct: 157 GSREMAGAFLVAPRPPYSRSPGGPESAPTPASVLPELRRGKQDLLSADSGLPAVDQGEVA 216
Query: 140 RPR--PAQAVGP------SGARRPEAPGWFRKSD 165
PR PAQ + P S AR P+ R D
Sbjct: 217 GPRLQPAQPLRPGAVPSASRARAPDTKAGTRARD 250
Score = 32.3 bits (72), Expect = 0.25
Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 11/109 (10%)
Query: 22 PGVHRGQSMAGLRVPAFNAGLRAITPSRAETQHPETTSSGMHREPL-SSTPIAHCESQRR 80
P V +G+ +AG R+ PS + + P+T + R+P ++ + S R
Sbjct: 208 PAVDQGE-VAGPRLQPAQPLRPGAVPSASRARAPDTKAGTRARDPAPGASQLRAAHSPHR 266
Query: 81 GTTGP------GMPCAPRAQRREAVGVL---VAPPRVPPRTPRRGSLGA 120
G G P P Q A G+ + VPP P RGS+GA
Sbjct: 267 GGGGAPRTQLAAPPRPPLPQENAAAGLASCSASCAAVPPPPPLRGSVGA 315
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 32.7 bits (73), Expect = 0.19
Identities = 36/118 (30%), Positives = 44/118 (37%), Gaps = 17/118 (14%)
Query: 79 RRGTTG-PGMPCAPRAQRREAVGVLVAPPRVPPRTPRRGSLGAAVF----SSSDLTFDAE 133
R G G PG+P P RE P RT ++GSLG A S A
Sbjct: 942 REGPPGFPGLPGPPGPPGREGP---------PGRTGQKGSLGEAGAPGHKGSKGAPGPAG 992
Query: 134 AQGQ---VRRPRPAQAVGPSGARRPEAPGWFRKSDRSGRAGTGAWSQWPQANPDEQQP 188
A+G+ P PA GP G P PG D +G WS A+ + P
Sbjct: 993 ARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQGPP 1050
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 32.7 bits (73), Expect = 0.19
Identities = 36/118 (30%), Positives = 44/118 (37%), Gaps = 17/118 (14%)
Query: 79 RRGTTG-PGMPCAPRAQRREAVGVLVAPPRVPPRTPRRGSLGAAVF----SSSDLTFDAE 133
R G G PG+P P RE P RT ++GSLG A S A
Sbjct: 527 REGPPGFPGLPGPPGPPGREGP---------PGRTGQKGSLGEAGAPGHKGSKGAPGPAG 577
Query: 134 AQGQ---VRRPRPAQAVGPSGARRPEAPGWFRKSDRSGRAGTGAWSQWPQANPDEQQP 188
A+G+ P PA GP G P PG D +G WS A+ + P
Sbjct: 578 ARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQGPP 635
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.130 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,729,546
Number of Sequences: 37866
Number of extensions: 542457
Number of successful extensions: 2196
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 192
Number of HSP's that attempted gapping in prelim test: 2045
Number of HSP's gapped (non-prelim): 344
length of query: 192
length of database: 18,247,518
effective HSP length: 97
effective length of query: 95
effective length of database: 14,574,516
effective search space: 1384579020
effective search space used: 1384579020
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.