Guide to the Human Genome
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Search of human proteins with 239756972

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239756972 PREDICTED: hypothetical protein XP_002345128 [Homo
sapiens]
         (128 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756972 PREDICTED: hypothetical protein XP_002345128 [Homo ...   274   2e-74
gi|239751481 PREDICTED: hypothetical protein [Homo sapiens]           274   2e-74
gi|239745979 PREDICTED: hypothetical protein XP_002343633 [Homo ...   274   2e-74
gi|119392077 Rap guanine nucleotide exchange factor (GEF) 5 [Hom...    31   0.23 
gi|205360962 polycystin 1 isoform 2 precursor [Homo sapiens]           27   3.3  
gi|205360954 polycystin 1 isoform 1 precursor [Homo sapiens]           27   3.3  
gi|239753190 PREDICTED: similar to proliferation-inducing protei...    27   3.3  
gi|56676397 ankyrin repeat domain 11 [Homo sapiens]                    27   4.4  
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]     27   4.4  
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]     27   4.4  
gi|138175817 zinc finger protein 236 [Homo sapiens]                    27   5.7  
gi|148225659 endonuclease domain containing 1 [Homo sapiens]           27   5.7  
gi|169168462 PREDICTED: similar to high mobility group box 3 [Ho...    26   7.4  
gi|169168166 PREDICTED: similar to high mobility group box 3 [Ho...    26   7.4  
gi|239742753 PREDICTED: similar to high mobility group box 3 iso...    26   7.4  
gi|113416897 PREDICTED: similar to high mobility group box 3 iso...    26   7.4  
gi|153791472 MAP/microtubule affinity-regulating kinase 1 [Homo ...    26   7.4  
gi|113680890 zinc finger protein 90 [Homo sapiens]                     26   7.4  
gi|239047414 slingshot 1 isoform 1 [Homo sapiens]                      26   9.7  
gi|239754438 PREDICTED: hypothetical protein [Homo sapiens]            26   9.7  
gi|239748928 PREDICTED: hypothetical protein XP_002346859 [Homo ...    26   9.7  
gi|239747764 PREDICTED: hypothetical protein XP_002348243 [Homo ...    26   9.7  
gi|239742950 PREDICTED: hypothetical protein XP_002342702 [Homo ...    26   9.7  
gi|239741630 PREDICTED: hypothetical protein XP_002342267 [Homo ...    26   9.7  
gi|21361576 zinc finger, CCHC domain containing 17 [Homo sapiens]      26   9.7  
gi|150378449 X-ray radiation resistance associated 1 [Homo sapiens]    26   9.7  

>gi|239756972 PREDICTED: hypothetical protein XP_002345128 [Homo
           sapiens]
          Length = 128

 Score =  274 bits (700), Expect = 2e-74
 Identities = 128/128 (100%), Positives = 128/128 (100%)

Query: 1   MAPLCSSLGHRARPCQKKKKKSILEKMGERPGHFTQDVTYEKSTTTRRFSERWKTHAGKN 60
           MAPLCSSLGHRARPCQKKKKKSILEKMGERPGHFTQDVTYEKSTTTRRFSERWKTHAGKN
Sbjct: 1   MAPLCSSLGHRARPCQKKKKKSILEKMGERPGHFTQDVTYEKSTTTRRFSERWKTHAGKN 60

Query: 61  MHRNVHRSLTPQSNSNAAATGGFLKMPPPKYVLWSYFFFSYPQEHVSSVCFHSTGSATIH 120
           MHRNVHRSLTPQSNSNAAATGGFLKMPPPKYVLWSYFFFSYPQEHVSSVCFHSTGSATIH
Sbjct: 61  MHRNVHRSLTPQSNSNAAATGGFLKMPPPKYVLWSYFFFSYPQEHVSSVCFHSTGSATIH 120

Query: 121 MALHTYGL 128
           MALHTYGL
Sbjct: 121 MALHTYGL 128


>gi|239751481 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 128

 Score =  274 bits (700), Expect = 2e-74
 Identities = 128/128 (100%), Positives = 128/128 (100%)

Query: 1   MAPLCSSLGHRARPCQKKKKKSILEKMGERPGHFTQDVTYEKSTTTRRFSERWKTHAGKN 60
           MAPLCSSLGHRARPCQKKKKKSILEKMGERPGHFTQDVTYEKSTTTRRFSERWKTHAGKN
Sbjct: 1   MAPLCSSLGHRARPCQKKKKKSILEKMGERPGHFTQDVTYEKSTTTRRFSERWKTHAGKN 60

Query: 61  MHRNVHRSLTPQSNSNAAATGGFLKMPPPKYVLWSYFFFSYPQEHVSSVCFHSTGSATIH 120
           MHRNVHRSLTPQSNSNAAATGGFLKMPPPKYVLWSYFFFSYPQEHVSSVCFHSTGSATIH
Sbjct: 61  MHRNVHRSLTPQSNSNAAATGGFLKMPPPKYVLWSYFFFSYPQEHVSSVCFHSTGSATIH 120

Query: 121 MALHTYGL 128
           MALHTYGL
Sbjct: 121 MALHTYGL 128


>gi|239745979 PREDICTED: hypothetical protein XP_002343633 [Homo
           sapiens]
          Length = 128

 Score =  274 bits (700), Expect = 2e-74
 Identities = 128/128 (100%), Positives = 128/128 (100%)

Query: 1   MAPLCSSLGHRARPCQKKKKKSILEKMGERPGHFTQDVTYEKSTTTRRFSERWKTHAGKN 60
           MAPLCSSLGHRARPCQKKKKKSILEKMGERPGHFTQDVTYEKSTTTRRFSERWKTHAGKN
Sbjct: 1   MAPLCSSLGHRARPCQKKKKKSILEKMGERPGHFTQDVTYEKSTTTRRFSERWKTHAGKN 60

Query: 61  MHRNVHRSLTPQSNSNAAATGGFLKMPPPKYVLWSYFFFSYPQEHVSSVCFHSTGSATIH 120
           MHRNVHRSLTPQSNSNAAATGGFLKMPPPKYVLWSYFFFSYPQEHVSSVCFHSTGSATIH
Sbjct: 61  MHRNVHRSLTPQSNSNAAATGGFLKMPPPKYVLWSYFFFSYPQEHVSSVCFHSTGSATIH 120

Query: 121 MALHTYGL 128
           MALHTYGL
Sbjct: 121 MALHTYGL 128


>gi|119392077 Rap guanine nucleotide exchange factor (GEF) 5 [Homo
           sapiens]
          Length = 730

 Score = 31.2 bits (69), Expect = 0.23
 Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 1/88 (1%)

Query: 4   LCSSLGHRARPCQKKKKKSILEKMGERPGHFTQDVTYEKSTTTRRFSERWKTHAGKNMHR 63
           LCS LG R +  +K  K +   K       F   V    + +  R S+ W+   GK    
Sbjct: 556 LCSQLGKRVQLVKKFIKIAAHCKAQRNLNSFFAIVMGLNTASVSRLSQTWEKIPGKFKKL 615

Query: 64  -NVHRSLTPQSNSNAAATGGFLKMPPPK 90
            +   SLT  S ++ A    F KM PPK
Sbjct: 616 FSELESLTDPSLNHKAYRDAFKKMKPPK 643


>gi|205360962 polycystin 1 isoform 2 precursor [Homo sapiens]
          Length = 4302

 Score = 27.3 bits (59), Expect = 3.3
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 58  GKNMHRNVHRSLTPQSNSNAAATGGFLKMPPPKYVLWSYFFFSYP 102
           G N+   +  S  PQ+ +N   +G  L  P   Y LW  F FS P
Sbjct: 649 GANICLPLDASCHPQACANGCTSGPGL--PGAPYALWREFLFSVP 691


>gi|205360954 polycystin 1 isoform 1 precursor [Homo sapiens]
          Length = 4303

 Score = 27.3 bits (59), Expect = 3.3
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 58  GKNMHRNVHRSLTPQSNSNAAATGGFLKMPPPKYVLWSYFFFSYP 102
           G N+   +  S  PQ+ +N   +G  L  P   Y LW  F FS P
Sbjct: 649 GANICLPLDASCHPQACANGCTSGPGL--PGAPYALWREFLFSVP 691


>gi|239753190 PREDICTED: similar to proliferation-inducing protein
          25 [Homo sapiens]
          Length = 65

 Score = 27.3 bits (59), Expect = 3.3
 Identities = 13/19 (68%), Positives = 14/19 (73%)

Query: 3  PLCSSLGHRARPCQKKKKK 21
          P  SSLG+R R C KKKKK
Sbjct: 2  PPHSSLGNRVRLCLKKKKK 20


>gi|56676397 ankyrin repeat domain 11 [Homo sapiens]
          Length = 2663

 Score = 26.9 bits (58), Expect = 4.4
 Identities = 14/60 (23%), Positives = 29/60 (48%)

Query: 16   QKKKKKSILEKMGERPGHFTQDVTYEKSTTTRRFSERWKTHAGKNMHRNVHRSLTPQSNS 75
            ++KK K   EK  +R    + D T +K    +   +  K HA ++  ++ H+  + + +S
Sbjct: 1206 KEKKDKESTEKYKDRKDRASVDSTQDKKNKQKLPEKAEKKHAAEDKAKSKHKEKSDKEHS 1265


>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
          Length = 2285

 Score = 26.9 bits (58), Expect = 4.4
 Identities = 12/20 (60%), Positives = 14/20 (70%)

Query: 70   TPQSNSNAAATGGFLKMPPP 89
            TPQS S++ A GG LK P P
Sbjct: 1146 TPQSTSSSMAEGGDLKPPTP 1165


>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
          Length = 2068

 Score = 26.9 bits (58), Expect = 4.4
 Identities = 12/20 (60%), Positives = 14/20 (70%)

Query: 70   TPQSNSNAAATGGFLKMPPP 89
            TPQS S++ A GG LK P P
Sbjct: 1146 TPQSTSSSMAEGGDLKPPTP 1165


>gi|138175817 zinc finger protein 236 [Homo sapiens]
          Length = 1845

 Score = 26.6 bits (57), Expect = 5.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 105  HVSSVCFHSTGSATIHMALHT 125
            HV S  F + GS  +HM LHT
Sbjct: 1226 HVCSNAFSTKGSLKVHMRLHT 1246


>gi|148225659 endonuclease domain containing 1 [Homo sapiens]
          Length = 500

 Score = 26.6 bits (57), Expect = 5.7
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 4/30 (13%)

Query: 46  TRRFSERWKTHAGKNMHRNVHRSLTPQSNS 75
           T+ F ERW      N+H  + R+LTPQ  S
Sbjct: 167 TQSFQERWYV----NLHSLMDRALTPQCGS 192


>gi|169168462 PREDICTED: similar to high mobility group box 3 [Homo
           sapiens]
          Length = 204

 Score = 26.2 bits (56), Expect = 7.4
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)

Query: 46  TRRFSERWKTHAGKNMHRNVHRSLTPQSNSN----AAATGGFLKMPP--PKYVLWSYFFF 99
           +++ SERWKT +GK   +    + T + + +      A GG  K  P  PK     +F F
Sbjct: 39  SKKCSERWKTMSGKEKSKFDEMAKTDKVHCDREMKGPAKGGKKKKDPSAPKRPPSGFFLF 98

Query: 100 S 100
           S
Sbjct: 99  S 99


>gi|169168166 PREDICTED: similar to high mobility group box 3 [Homo
           sapiens]
          Length = 204

 Score = 26.2 bits (56), Expect = 7.4
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)

Query: 46  TRRFSERWKTHAGKNMHRNVHRSLTPQSNSN----AAATGGFLKMPP--PKYVLWSYFFF 99
           +++ SERWKT +GK   +    + T + + +      A GG  K  P  PK     +F F
Sbjct: 39  SKKCSERWKTMSGKEKSKFDEMAKTDKVHCDREMKGPAKGGKKKKDPSAPKRPPSGFFLF 98

Query: 100 S 100
           S
Sbjct: 99  S 99


>gi|239742753 PREDICTED: similar to high mobility group box 3
           isoform 2 [Homo sapiens]
          Length = 183

 Score = 26.2 bits (56), Expect = 7.4
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)

Query: 46  TRRFSERWKTHAGKNMHRNVHRSLTPQSNSN----AAATGGFLKMPP--PKYVLWSYFFF 99
           +++ SERWKT +GK   +    + T + + +      A GG  K  P  PK     +F F
Sbjct: 21  SKKCSERWKTMSGKEKSKFDEMAKTDKVHCDREMKGPAKGGKKKKDPSAPKRPPSGFFLF 80

Query: 100 S 100
           S
Sbjct: 81  S 81


>gi|113416897 PREDICTED: similar to high mobility group box 3
           isoform 1 [Homo sapiens]
          Length = 201

 Score = 26.2 bits (56), Expect = 7.4
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)

Query: 46  TRRFSERWKTHAGKNMHRNVHRSLTPQSNSN----AAATGGFLKMPP--PKYVLWSYFFF 99
           +++ SERWKT +GK   +    + T + + +      A GG  K  P  PK     +F F
Sbjct: 39  SKKCSERWKTMSGKEKSKFDEMAKTDKVHCDREMKGPAKGGKKKKDPSAPKRPPSGFFLF 98

Query: 100 S 100
           S
Sbjct: 99  S 99


>gi|153791472 MAP/microtubule affinity-regulating kinase 1 [Homo
           sapiens]
          Length = 795

 Score = 26.2 bits (56), Expect = 7.4
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 15  CQKKKKKSILEKMG-ERPGHFTQDVTYEKSTTTRRFSERWKTHAGKNMHRNVHRSLTPQS 73
           CQ+ +  S L     + P H     +   +   RRFS+    HAG ++   V  +  PQ+
Sbjct: 387 CQRSRPSSDLNNSTLQSPAHLKVQRSISANQKQRRFSD----HAGPSIPPAVSYTKRPQA 442

Query: 74  NS 75
           NS
Sbjct: 443 NS 444


>gi|113680890 zinc finger protein 90 [Homo sapiens]
          Length = 636

 Score = 26.2 bits (56), Expect = 7.4
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 33  HFTQDVTYEKSTTTRRFSERWKTHAGKNMHRNVHRSLTPQSN 74
           H T + +++ S+   R  E WK H G        + +TPQ N
Sbjct: 114 HATLEDSWDVSSQLDRQQENWKRHLGSEASTQ-KKIITPQEN 154


>gi|239047414 slingshot 1 isoform 1 [Homo sapiens]
          Length = 1049

 Score = 25.8 bits (55), Expect = 9.7
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 77  AAATGGFLKMPPPKYVLWSYFFFSYPQEHVSSVCFHSTGSA 117
           A+  GG LK PPP +    +   S+ ++ + ++C+  T S+
Sbjct: 888 ASLEGGSLKSPPPFFYRLDH-TSSFSKDFLKTICYTPTSSS 927


>gi|239754438 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 709

 Score = 25.8 bits (55), Expect = 9.7
 Identities = 12/28 (42%), Positives = 14/28 (50%)

Query: 62  HRNVHRSLTPQSNSNAAATGGFLKMPPP 89
           HR V  S   +    A   GGFL+ PPP
Sbjct: 201 HRVVPGSALRELGVRAGGVGGFLRPPPP 228


>gi|239748928 PREDICTED: hypothetical protein XP_002346859 [Homo
           sapiens]
          Length = 709

 Score = 25.8 bits (55), Expect = 9.7
 Identities = 12/28 (42%), Positives = 14/28 (50%)

Query: 62  HRNVHRSLTPQSNSNAAATGGFLKMPPP 89
           HR V  S   +    A   GGFL+ PPP
Sbjct: 201 HRVVPGSALRELGVRAGGVGGFLRPPPP 228


>gi|239747764 PREDICTED: hypothetical protein XP_002348243 [Homo
          sapiens]
          Length = 65

 Score = 25.8 bits (55), Expect = 9.7
 Identities = 12/19 (63%), Positives = 14/19 (73%)

Query: 3  PLCSSLGHRARPCQKKKKK 21
          P  SSLG+R R C +KKKK
Sbjct: 2  PPHSSLGNRVRLCLEKKKK 20


>gi|239742950 PREDICTED: hypothetical protein XP_002342702 [Homo
           sapiens]
          Length = 709

 Score = 25.8 bits (55), Expect = 9.7
 Identities = 12/28 (42%), Positives = 14/28 (50%)

Query: 62  HRNVHRSLTPQSNSNAAATGGFLKMPPP 89
           HR V  S   +    A   GGFL+ PPP
Sbjct: 201 HRVVPGSALRELGVRAGGVGGFLRPPPP 228


>gi|239741630 PREDICTED: hypothetical protein XP_002342267 [Homo
          sapiens]
          Length = 65

 Score = 25.8 bits (55), Expect = 9.7
 Identities = 12/19 (63%), Positives = 14/19 (73%)

Query: 3  PLCSSLGHRARPCQKKKKK 21
          P  SSLG+R R C +KKKK
Sbjct: 2  PPHSSLGNRVRLCLEKKKK 20


>gi|21361576 zinc finger, CCHC domain containing 17 [Homo sapiens]
          Length = 241

 Score = 25.8 bits (55), Expect = 9.7
 Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 2/75 (2%)

Query: 5   CSSLGHRARPC--QKKKKKSILEKMGERPGHFTQDVTYEKSTTTRRFSERWKTHAGKNMH 62
           C   GH A+ C  Q    K  L    E      +   +EK   TR  S + K    K  H
Sbjct: 136 CGCKGHFAKDCFMQPGGTKYSLIPDEEEEKEEAKSAEFEKPDPTRNPSRKRKKEKKKKKH 195

Query: 63  RNVHRSLTPQSNSNA 77
           R+   S +  S+S +
Sbjct: 196 RDRKSSDSDSSDSES 210


>gi|150378449 X-ray radiation resistance associated 1 [Homo sapiens]
          Length = 792

 Score = 25.8 bits (55), Expect = 9.7
 Identities = 18/74 (24%), Positives = 29/74 (39%)

Query: 17  KKKKKSILEKMGERPGHFTQDVTYEKSTTTRRFSERWKTHAGKNMHRNVHRSLTPQSNSN 76
           K KK+S  E   + PGH        K    R+ S+    +A +N  ++ H  +   ++ N
Sbjct: 70  KGKKESRRENQVDLPGHILDQAFLLKHHCVRKPSDLCTINAKENDFKHFHSVIYINASEN 129

Query: 77  AAATGGFLKMPPPK 90
                 F   P  K
Sbjct: 130 LLPLEAFHTFPALK 143


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.129    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,938,252
Number of Sequences: 37866
Number of extensions: 242870
Number of successful extensions: 595
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 580
Number of HSP's gapped (non-prelim): 28
length of query: 128
length of database: 18,247,518
effective HSP length: 90
effective length of query: 38
effective length of database: 14,839,578
effective search space: 563903964
effective search space used: 563903964
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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