Guide to the Human Genome
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Name: LOC100290681 Sequence: fasta or formatted (709aa) NCBI GI: 239748928
Description:

PREDICTED: hypothetical protein XP_002346859

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.1         86           3
 C cysteine            2.5         18           2
 D aspartate           1.6         11           1
 E glutamate           4.8         34           2
 F phenylalanine       2.4         17           1
 G glycine            14.7        104           2
 H histidine           2.5         18           1
 I isoleucine          1.0          7           1
 K lysine              2.0         14           2
 L leucine            10.7         76           4
 M methionine          0.8          6           1
 N asparagine          1.4         10           1
 P proline            10.0         71           5
 Q glutamine           2.3         16           2
 R arginine           10.0         71           3
 S serine             10.7         76           2
 T threonine           3.0         21           1
 V valine              5.6         40           3
 W tryptophan          1.7         12           1
 Y tyrosine            0.1          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346859 
LOC100293575          1.000   PREDICTED: hypothetical protein 
LOC100287330          0.995   PREDICTED: hypothetical protein XP_002342702 
LOC338758             0.017   PREDICTED: hypothetical protein 
LOC338758             0.017   PREDICTED: hypothetical protein 
LOC338758             0.016   PREDICTED: hypothetical protein 
LOC100133915          0.016   PREDICTED: hypothetical protein 
AKAP1                 0.015   A-kinase anchor protein 1 precursor 
COL3A1                0.013   collagen type III alpha 1 preproprotein 
TBC1D10B              0.013   TBC1 domain family, member 10B 
SFTPA2                0.013   surfactant protein A2 
SFTPA2B               0.013   surfactant, pulmonary-associated protein A2 
TTMA                  0.013   hypothetical protein LOC645369 
CASKIN2               0.012   cask-interacting protein 2 isoform b 
CASKIN2               0.012   cask-interacting protein 2 isoform a 
HCN2                  0.012   hyperpolarization activated cyclic nucleotide-gated...
PRB2                  0.012   proline-rich protein BstNI subfamily 2 
KREMEN2               0.012   kringle-containing transmembrane protein 2 isoform d...
TNRC18                0.012   trinucleotide repeat containing 18 
SFTPA1                0.011   surfactant protein A1 
SFTPA1B               0.011   surfactant, pulmonary-associated protein A1B 
CCDC120               0.011   coiled-coil domain containing 120 isoform 3 
CCDC120               0.011   coiled-coil domain containing 120 isoform 4 
CCDC120               0.011   coiled-coil domain containing 120 isoform 2 
CCDC120               0.011   coiled-coil domain containing 120 isoform 1 
LOC100133655          0.011   PREDICTED: hypothetical protein 
FLJ22184              0.011   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.011   PREDICTED: hypothetical protein LOC80164 
TSC22D2               0.011   TSC22 domain family, member 2 
CASKIN1               0.011   CASK interacting protein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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