Guide to the Human Genome
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Name: LOC100293698 Sequence: fasta or formatted (65aa) NCBI GI: 239753190
Description:

PREDICTED: similar to proliferation-inducing protein 25

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6          3           1
 C cysteine            3.1          2           1
 D aspartate           3.1          2           1
 E glutamate           3.1          2           1
 F phenylalanine       4.6          3           1
 G glycine             4.6          3           1
 H histidine           6.2          4           1
 I isoleucine          9.2          6           2
 K lysine             12.3          8           5
 L leucine             4.6          3           1
 M methionine          3.1          2           1
 N asparagine          6.2          4           1
 P proline             6.2          4           2
 Q glutamine           7.7          5           2
 R arginine            4.6          3           1
 S serine              9.2          6           2
 T threonine           3.1          2           1
 V valine              3.1          2           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to proliferation-inducing protei... 
LOC100291513          0.982   PREDICTED: hypothetical protein XP_002348243 
LOC100289585          0.982   PREDICTED: hypothetical protein XP_002342267 
ANKRD31               0.115   PREDICTED: ankyrin repeat domain 31 
ANKRD31               0.115   PREDICTED: ankyrin repeat domain 31 
ANKRD31               0.115   PREDICTED: ankyrin repeat domain 31 
LOC642337             0.044   PREDICTED: similar to hCG1648021 
LOC642337             0.044   PREDICTED: similar to hCG1648021 
LOC642337             0.044   PREDICTED: similar to hCG1648021 
RUNDC2B               0.027   RUN domain containing 2B 
LOC100291983          0.018   PREDICTED: hypothetical protein XP_002345128 
LOC100289105          0.018   PREDICTED: hypothetical protein 
LOC100289105          0.018   PREDICTED: hypothetical protein XP_002343633 
TTC26                 0.009   tetratricopeptide repeat domain 26 isoform 1 
TTC26                 0.009   tetratricopeptide repeat domain 26 isoform 3 
TTC26                 0.009   tetratricopeptide repeat domain 26 isoform 2 
RUNDC2A               0.009   RUN domain containing 2A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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