Guide to the Human Genome
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Name: LOC100291983 Sequence: fasta or formatted (128aa) NCBI GI: 239756972
Description:

PREDICTED: hypothetical protein XP_002345128

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2          8           3
 C cysteine            2.3          3           1
 D aspartate           0.8          1           1
 E glutamate           3.9          5           1
 F phenylalanine       5.5          7           3
 G glycine             6.2          8           2
 H histidine           7.0          9           1
 I isoleucine          1.6          2           1
 K lysine              8.6         11           5
 L leucine             6.2          8           1
 M methionine          3.9          5           1
 N asparagine          3.1          4           1
 P proline             6.2          8           3
 Q glutamine           3.1          4           1
 R arginine            6.2          8           2
 S serine             10.9         14           2
 T threonine           8.6         11           3
 V valine              3.9          5           1
 W tryptophan          1.6          2           1
 Y tyrosine            3.9          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002345128 
LOC100289105          1.000   PREDICTED: hypothetical protein 
LOC100289105          1.000   PREDICTED: hypothetical protein XP_002343633 
RAPGEF5               0.024   Rap guanine nucleotide exchange factor (GEF) 5 [Hom...
PKD1                  0.008   polycystin 1 isoform 2 precursor 
PKD1                  0.008   polycystin 1 isoform 1 precursor 
LOC100293698          0.008   PREDICTED: similar to proliferation-inducing protei...
ANKRD11               0.008   ankyrin repeat domain 11 
ARID1A                0.008   AT rich interactive domain 1A isoform a 
ARID1A                0.008   AT rich interactive domain 1A isoform b 
ZNF236                0.008   zinc finger protein 236 
ENDOD1                0.008   endonuclease domain containing 1 
LOC729595             0.004   PREDICTED: similar to high mobility group box 3 [Ho...
LOC729595             0.004   PREDICTED: similar to high mobility group box 3 [Ho...
LOC729595             0.004   PREDICTED: similar to high mobility group box 3 iso...
LOC729595             0.004   PREDICTED: similar to high mobility group box 3 iso...
MARK1                 0.004   MAP/microtubule affinity-regulating kinase 1 
ZFP90                 0.004   zinc finger protein 90 
SSH1                  0.004   slingshot 1 isoform 1 
LOC100293575          0.004   PREDICTED: hypothetical protein 
LOC100290681          0.004   PREDICTED: hypothetical protein XP_002346859 
LOC100291513          0.004   PREDICTED: hypothetical protein XP_002348243 
LOC100287330          0.004   PREDICTED: hypothetical protein XP_002342702 
LOC100289585          0.004   PREDICTED: hypothetical protein XP_002342267 
ZCCHC17               0.004   zinc finger, CCHC domain containing 17 
XRRA1                 0.004   X-ray radiation resistance associated 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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