Guide to the Human Genome
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Name: LOC100293032 Sequence: fasta or formatted (248aa) NCBI GI: 239756888
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.5         36           4
 C cysteine            2.0          5           1
 D aspartate           2.8          7           1
 E glutamate           4.0         10           1
 F phenylalanine       0.4          1           1
 G glycine            10.9         27           2
 H histidine           4.0         10           2
 I isoleucine          1.6          4           1
 K lysine              0.8          2           1
 L leucine            16.1         40           2
 M methionine          1.2          3           1
 N asparagine          0.8          2           1
 P proline            11.7         29           2
 Q glutamine           5.6         14           2
 R arginine            2.4          6           1
 S serine              6.5         16           4
 T threonine           2.4          6           1
 V valine             10.5         26           2
 W tryptophan          1.2          3           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290618          0.839   PREDICTED: hypothetical protein XP_002347833 
LOC100288505          0.839   PREDICTED: hypothetical protein XP_002343610 
TAF4                  0.032   TBP-associated factor 4 
GLTSCR1               0.030   glioma tumor suppressor candidate region gene 1 [Ho...
NACA                  0.027   nascent polypeptide-associated complex alpha subuni...
MBD6                  0.027   methyl-CpG binding domain protein 6 
NKX6-1                0.025   NK6 transcription factor related, locus 1 
MN1                   0.025   meningioma  1 
EMID1                 0.023   EMI domain containing 1 
C1orf104              0.023   hypothetical protein LOC284618 
CIC                   0.023   capicua homolog 
TBC1D10B              0.021   TBC1 domain family, member 10B 
C5orf37               0.021   proteome of centriole 5 isoform 1 
C5orf37               0.021   proteome of centriole 5 isoform 2 
FUBP1                 0.021   far upstream element-binding protein 
SRCAP                 0.021   Snf2-related CBP activator protein 
CEL                   0.021   carboxyl ester lipase precursor 
LOC100294086          0.021   PREDICTED: hypothetical protein 
COL10A1               0.021   type X collagen alpha 1 precursor 
BAT2D1                0.021   HBxAg transactivated protein 2 
ELN                   0.019   elastin isoform e precursor 
ELN                   0.019   elastin isoform d precursor 
ELN                   0.019   elastin isoform c precursor 
ELN                   0.019   elastin isoform b precursor 
ELN                   0.019   elastin isoform a precursor 
LOC100293771          0.019   PREDICTED: hypothetical protein 
LOC100290924          0.019   PREDICTED: hypothetical protein XP_002346979 
PRR12                 0.019   proline rich 12 
CASKIN1               0.019   CASK interacting protein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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