Guide to the Human Genome
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Name: LOC100290618 Sequence: fasta or formatted (455aa) NCBI GI: 239751384
Description:

PREDICTED: hypothetical protein XP_002347833

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.6         53           4
 C cysteine            1.3          6           1
 D aspartate           3.5         16           1
 E glutamate           5.3         24           3
 F phenylalanine       1.3          6           1
 G glycine            12.3         56           2
 H histidine           2.6         12           2
 I isoleucine          1.3          6           1
 K lysine              1.5          7           1
 L leucine            12.3         56           2
 M methionine          0.9          4           1
 N asparagine          0.9          4           1
 P proline            10.1         46           2
 Q glutamine           5.9         27           2
 R arginine            4.4         20           1
 S serine              8.8         40           4
 T threonine           3.3         15           1
 V valine              9.5         43           2
 W tryptophan          2.4         11           2
 Y tyrosine            0.7          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347833 
LOC100288505          1.000   PREDICTED: hypothetical protein XP_002343610 
LOC100293032          0.443   PREDICTED: hypothetical protein 
MN1                   0.017   meningioma  1 
ADNP2                 0.016   ADNP homeobox 2 
ANKRD33B              0.013   PREDICTED: ankyrin repeat domain 33B 
NKX6-1                0.012   NK6 transcription factor related, locus 1 
CIC                   0.012   capicua homolog 
LOC402382             0.012   PREDICTED: similar to hCG2040468 
TAF4                  0.011   TBP-associated factor 4 
TBC1D10B              0.011   TBC1 domain family, member 10B 
C5orf37               0.011   proteome of centriole 5 isoform 1 
C5orf37               0.011   proteome of centriole 5 isoform 2 
ANKRD36               0.011   PREDICTED: ankyrin repeat domain 36 
LOC100294086          0.011   PREDICTED: hypothetical protein 
BAT2D1                0.011   HBxAg transactivated protein 2 
LOC100293771          0.010   PREDICTED: hypothetical protein 
LOC100290924          0.010   PREDICTED: hypothetical protein XP_002346979 
ZBTB45                0.010   zinc finger and BTB domain containing 45 
COL10A1               0.009   type X collagen alpha 1 precursor 
CEL                   0.009   carboxyl ester lipase precursor 
LOC100292600          0.009   PREDICTED: hypothetical protein 
LOC100290191          0.009   PREDICTED: hypothetical protein XP_002346744 
LOC100289641          0.009   PREDICTED: hypothetical protein XP_002342602 
PCDHAC2               0.009   protocadherin alpha subfamily C, 2 isoform 1 precurso...
FMN1                  0.009   formin 1 
COL5A2                0.009   alpha 2 type V collagen preproprotein 
VASP                  0.009   vasodilator-stimulated phosphoprotein 
COL16A1               0.009   alpha 1 type XVI collagen precursor 
ZMIZ2                 0.009   zinc finger, MIZ-type containing 2 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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