Guide to the Human Genome
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Name: LOC644246 Sequence: fasta or formatted (118aa) NCBI GI: 239756858
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {328aa} PREDICTED: hypothetical protein LOC644246
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.9         20           3
 C cysteine            0.8          1           1
 D aspartate           1.7          2           1
 E glutamate           6.8          8           1
 F phenylalanine       4.2          5           1
 G glycine             7.6          9           2
 H histidine           1.7          2           1
 I isoleucine          0.0          0           0
 K lysine              4.2          5           1
 L leucine             6.8          8           2
 M methionine          2.5          3           1
 N asparagine          2.5          3           1
 P proline            17.8         21           4
 Q glutamine           4.2          5           2
 R arginine            5.9          7           1
 S serine              7.6          9           1
 T threonine           4.2          5           1
 V valine              3.4          4           1
 W tryptophan          0.8          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC644246             0.350   PREDICTED: hypothetical protein LOC644246 
SAMD1                 0.086   sterile alpha motif domain containing 1 
PDCD6IP               0.073   programmed cell death 6 interacting protein isoform...
PDCD6IP               0.073   programmed cell death 6 interacting protein isoform ...
HCN2                  0.068   hyperpolarization activated cyclic nucleotide-gated...
FLJ22184              0.068   PREDICTED: hypothetical protein FLJ22184 
PRRT3                 0.068   proline-rich transmembrane protein 3 
MUC7                  0.064   mucin 7, secreted precursor 
MUC7                  0.064   mucin 7, secreted precursor 
MUC7                  0.064   mucin 7, secreted precursor 
EPN1                  0.064   epsin 1 isoform b 
EPN1                  0.064   epsin 1 isoform a 
SFPQ                  0.064   splicing factor proline/glutamine rich (polypyrimidin...
ZNF575                0.064   zinc finger protein 575 
DCAF10                0.064   WD repeat domain 32 
FMNL1                 0.064   formin-like 1 
WASL                  0.064   Wiskott-Aldrich syndrome gene-like protein 
RAB11FIP3             0.059   rab11-family interacting protein 3 isoform 1 
LOC100130360          0.059   PREDICTED: hypothetical protein 
MED25                 0.059   mediator complex subunit 25 
ZCCHC2                0.059   zinc finger, CCHC domain containing 2 
KIAA0754              0.055   hypothetical protein LOC643314 
BSN                   0.055   bassoon protein 
BCAR1                 0.055   breast cancer anti-estrogen resistance 1 
INPPL1                0.055   inositol polyphosphate phosphatase-like 1 
LOC646079             0.055   PREDICTED: similar to breast cancer anti-estrogen r...
LOC646079             0.055   PREDICTED: similar to breast cancer anti-estrogen r...
LOC100133063          0.055   PREDICTED: similar to breast cancer anti-estrogen r...
LOC646079             0.055   PREDICTED: similar to breast cancer anti-estrogen r...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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