Guide to the Human Genome
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Name: FIBCD1 Sequence: fasta or formatted (461aa) NCBI GI: 223029461
Description:

fibrinogen C domain containing 1

Referenced in:

Extracellular Matrix

Other entries for this name:
alt mRNA [461aa] fibrinogen C domain containing 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         45           2
 C cysteine            2.0          9           1
 D aspartate           7.4         34           2
 E glutamate           4.6         21           2
 F phenylalanine       3.0         14           2
 G glycine             9.5         44           3
 H histidine           3.3         15           1
 I isoleucine          1.3          6           1
 K lysine              2.0          9           1
 L leucine            11.3         52           2
 M methionine          1.5          7           1
 N asparagine          2.6         12           2
 P proline             4.3         20           3
 Q glutamine           5.2         24           2
 R arginine            8.2         38           2
 S serine              7.4         34           2
 T threonine           5.6         26           2
 V valine              5.9         27           2
 W tryptophan          2.0          9           2
 Y tyrosine            3.3         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   fibrinogen C domain containing 1 
FIBCD1                1.000   fibrinogen C domain containing 1 
MFAP4                 0.254   microfibrillar-associated protein 4 
FCN2                  0.226   ficolin 2 isoform b precursor 
FCN2                  0.225   ficolin 2 isoform a precursor 
FCN1                  0.217   ficolin 1 precursor 
TNR                   0.207   tenascin R 
FGL1                  0.206   fibrinogen-like 1 precursor 
FGL1                  0.206   fibrinogen-like 1 precursor 
FGL1                  0.206   fibrinogen-like 1 precursor 
FGL1                  0.206   fibrinogen-like 1 precursor 
ANGPTL2               0.202   angiopoietin-like 2 precursor 
ANGPTL1               0.198   angiopoietin-like 1 precursor 
TNC                   0.189   tenascin C precursor 
TNN                   0.187   tenascin N 
ANGPTL6               0.185   angiopoietin-like 6 
ANGPT4                0.179   angiopoietin 4 
FCN3                  0.178   ficolin 3 isoform 2 precursor 
FCN3                  0.178   ficolin 3 isoform 1 precursor 
TNXB                  0.177   tenascin XB isoform 2 
TNXB                  0.177   tenascin XB isoform 1 precursor 
ANGPTL7               0.169   angiopoietin-like 7 
ANGPT1                0.167   angiopoietin 1 
FGA                   0.161   fibrinogen, alpha polypeptide isoform alpha-E preprop...
FGG                   0.156   fibrinogen, gamma chain isoform gamma-B precursor [H...
FGG                   0.156   fibrinogen, gamma chain isoform gamma-A precursor [H...
FGL2                  0.156   fibrinogen-like 2 precursor 
ANGPT2                0.154   angiopoietin 2 isoform c precursor 
ANGPT2                0.154   angiopoietin 2 isoform b precursor 
ANGPT2                0.154   angiopoietin 2 isoform a precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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