Guide to the Human Genome
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Name: LOC646960 Sequence: fasta or formatted (541aa) NCBI GI: 169164530
Description:

PREDICTED: similar to hCG1818432

Not currently referenced in the text

Other entries for this name:
alt prot {541aa} PREDICTED: hypothetical protein LOC646960
alt prot {541aa} PREDICTED: similar to hCG1818432
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.0         65           2
 C cysteine            3.0         16           1
 D aspartate           2.2         12           1
 E glutamate           6.3         34           2
 F phenylalanine       2.4         13           1
 G glycine            10.5         57           3
 H histidine           3.0         16           2
 I isoleucine          0.7          4           1
 K lysine              1.5          8           1
 L leucine            14.0         76           4
 M methionine          0.9          5           1
 N asparagine          1.5          8           1
 P proline            10.5         57           2
 Q glutamine           4.3         23           2
 R arginine           10.0         54           4
 S serine              5.9         32           3
 T threonine           3.7         20           1
 V valine              5.0         27           1
 W tryptophan          1.8         10           1
 Y tyrosine            0.7          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1818432 
LOC646960             0.998   PREDICTED: similar to hCG1818432 
LOC646960             0.998   PREDICTED: hypothetical protein LOC646960 
TMPRSS9               0.121   transmembrane protease, serine 9 
TMPRSS3               0.112   transmembrane protease, serine 3 isoform 1 
OVCH1                 0.110   ovochymase 1 
F12                   0.110   coagulation factor XII precursor 
ST14                  0.108   matriptase 
PRSS33                0.107   protease, serine, 33 
PRSS7                 0.105   enterokinase precursor 
TMPRSS2               0.101   transmembrane protease, serine 2 isoform 1 
TMPRSS2               0.101   transmembrane protease, serine 2 isoform 2 
TMPRSS6               0.099   transmembrane protease, serine 6 
HPN                   0.098   hepsin 
HPN                   0.098   hepsin 
TMPRSS5               0.096   transmembrane protease, serine 5 
TMPRSS11F             0.096   transmembrane protease, serine 11F 
TMPRSS11D             0.094   transmembrane protease, serine 11D 
PRSS8                 0.092   prostasin preproprotein 
TMPRSS12              0.090   transmembrane protease, serine 12 
KLKB1                 0.089   plasma kallikrein B1 precursor 
PRSS1                 0.089   protease, serine, 1 preproprotein 
TMPRSS11E             0.089   transmembrane protease, serine 11E 
TMPRSS11E2            0.089   transmembrane protease, serine 11E2 
ACR                   0.088   acrosin precursor 
TPSG1                 0.087   transmembrane tryptase preproprotein 
CTRB1                 0.087   chymotrypsin B1 
PLG                   0.087   plasminogen 
HGFAC                 0.086   HGF activator preproprotein 
TMPRSS7               0.086   transmembrane protease, serine 7 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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