Guide to the Human Genome
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Name: LOC100292090 Sequence: fasta or formatted (764aa) NCBI GI: 239757714
Description:

PREDICTED: hypothetical protein XP_002345529

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.9         83           3
 C cysteine            2.4         18           1
 D aspartate           5.6         43           2
 E glutamate           5.5         42           3
 F phenylalanine       0.9          7           1
 G glycine             9.4         72           2
 H histidine           6.5         50           3
 I isoleucine          1.2          9           2
 K lysine              2.0         15           1
 L leucine            10.3         79           3
 M methionine          1.2          9           1
 N asparagine          1.8         14           2
 P proline             8.0         61           2
 Q glutamine           5.4         41           2
 R arginine            9.6         73           3
 S serine              5.6         43           2
 T threonine           4.1         31           2
 V valine              7.5         57           2
 W tryptophan          1.4         11           1
 Y tyrosine            0.8          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002345529 
LOC100290023          0.912   PREDICTED: hypothetical protein XP_002348147 
LOC100293645          0.026   PREDICTED: hypothetical protein 
LOC100290771          0.026   PREDICTED: hypothetical protein XP_002347536 
LOC100287448          0.026   PREDICTED: hypothetical protein XP_002342205 
TENC1                 0.007   tensin like C1 domain containing phosphatase isoform...
TENC1                 0.007   tensin like C1 domain containing phosphatase isoform...
TENC1                 0.007   tensin like C1 domain containing phosphatase isoform...
SS18                  0.006   synovial sarcoma translocation, chromosome 18 isofor...
FLG                   0.006   filaggrin 
SS18                  0.006   synovial sarcoma translocation, chromosome 18 isofor...
LOC388199             0.006   hypothetical protein LOC388199 
LOC100291688          0.006   PREDICTED: hypothetical protein XP_002345241 
LOC100290946          0.006   PREDICTED: hypothetical protein XP_002347121 
LOC100288840          0.006   PREDICTED: hypothetical protein XP_002344246 
MLL2                  0.006   myeloid/lymphoid or mixed-lineage leukemia 2 
YTHDC1                0.006   splicing factor YT521-B isoform 2 
YTHDC1                0.006   splicing factor YT521-B isoform 1 
USP6NL                0.005   USP6 N-terminal like isoform 1 
USP6NL                0.005   USP6 N-terminal like isoform 2 
KCNN3                 0.005   small conductance calcium-activated potassium chann...
LOC388199             0.005   PREDICTED: hypothetical protein LOC388199 
LOC100130982          0.005   PREDICTED: hypothetical protein 
LOC100287063          0.005   PREDICTED: hypothetical protein 
LOC100130982          0.005   PREDICTED: hypothetical protein 
LOC100287063          0.005   PREDICTED: hypothetical protein XP_002342368 
C2orf53               0.005   hypothetical protein LOC339779 
LOC100290054          0.004   PREDICTED: hypothetical protein XP_002348009 
LOC100287338          0.004   PREDICTED: hypothetical protein XP_002343730 
MAML1                 0.004   mastermind-like 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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