Guide to the Human Genome
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Name: LOC100134365 Sequence: fasta or formatted (501aa) NCBI GI: 239753271
Description:

PREDICTED: similar to ankyrin repeat domain 36

Referenced in:

Ankyrin Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.4         62           6
 C cysteine            2.6         13           1
 D aspartate           4.4         22           1
 E glutamate           5.0         25           2
 F phenylalanine       1.4          7           1
 G glycine            10.0         50           2
 H histidine           2.6         13           1
 I isoleucine          2.8         14           1
 K lysine              1.4          7           1
 L leucine            10.0         50           3
 M methionine          2.2         11           1
 N asparagine          1.6          8           1
 P proline             8.6         43           3
 Q glutamine           5.6         28           2
 R arginine            7.6         38           2
 S serine              8.2         41           2
 T threonine           5.6         28           2
 V valine              5.6         28           2
 W tryptophan          1.8          9           1
 Y tyrosine            0.8          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to ankyrin repeat domain 36 [Hom... 
ANKRD36               0.358   PREDICTED: ankyrin repeat domain 36 
LOC652726             0.171   PREDICTED: similar to ankyrin repeat domain 36 [Hom...
LOC400987             0.169   PREDICTED: similar to UNCoordinated family member (...
ANKRD26               0.109   ankyrin repeat domain 26 
ANKRD20A3             0.108   ankyrin repeat domain 20 family, member A3 
ANKRD20A2             0.108   ankyrin repeat domain 20 family, member A2 
ANKRD20A4             0.108   ankyrin repeat domain 20 family, member A4 
ANKRD20A1             0.106   ankyrin repeat domain 20 family, member A1 
ANKRD18B              0.104   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.104   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.104   PREDICTED: ankyrin repeat domain 18B 
ANKRD20A5             0.103   PREDICTED: ankyrin repeat domain 20 family, member ...
ANKRD20A5             0.103   PREDICTED: ankyrin repeat domain 20 family, member ...
ANKRD18A              0.100   PREDICTED: ankyrin repeat domain 18A 
ANKRD18A              0.100   PREDICTED: ankyrin repeat domain 18A 
ANKRD18A              0.100   PREDICTED: ankyrin repeat domain 18A 
POTEA                 0.095   POTE ankyrin domain family, member A isoform 1 [Homo...
POTEA                 0.095   POTE ankyrin domain family, member A isoform 2 [Homo...
ANKRD30A              0.093   ankyrin repeat domain 30A 
FLJ46358              0.091   PREDICTED: FLJ46358 protein 
FLJ46358              0.091   PREDICTED: hypothetical protein LOC400110 
FLJ46358              0.091   PREDICTED: FLJ46358 protein 
POTEG                 0.091   POTE ankyrin domain family, member G 
LOC730465             0.090   PREDICTED: similar to hCG1793014 
ANKRD62               0.090   PREDICTED: ankyrin repeat domain 62 
LOC729722             0.090   PREDICTED: ankyrin repeat domain-containing protein...
ANKRD62               0.090   PREDICTED: ankyrin repeat domain 62 isoform 4 [Homo...
ANKRD62               0.090   PREDICTED: ankyrin repeat domain 62 isoform 1 [Homo...
LOC729722             0.090   PREDICTED: ankyrin repeat domain-containing protein...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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