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Search of human proteins with 239756603
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756603 PREDICTED: hypothetical protein [Homo sapiens]
(191 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756603 PREDICTED: hypothetical protein [Homo sapiens] 406 e-114
gi|239744417 PREDICTED: similar to hCG2023245 [Homo sapiens] 41 5e-04
gi|239754052 PREDICTED: hypothetical protein [Homo sapiens] 40 0.001
gi|239742598 PREDICTED: hypothetical protein [Homo sapiens] 40 0.001
gi|239755571 PREDICTED: hypothetical protein [Homo sapiens] 40 0.002
gi|239754368 PREDICTED: hypothetical protein [Homo sapiens] 37 0.010
gi|239748915 PREDICTED: hypothetical protein XP_002346855 [Homo ... 37 0.010
gi|239742939 PREDICTED: hypothetical protein XP_002342693 [Homo ... 37 0.010
gi|7706501 WW domain binding protein 11 [Homo sapiens] 37 0.010
gi|239757244 PREDICTED: hypothetical protein [Homo sapiens] 37 0.014
gi|239751752 PREDICTED: hypothetical protein [Homo sapiens] 37 0.014
gi|239746252 PREDICTED: hypothetical protein XP_002343716 [Homo ... 37 0.014
gi|239756550 PREDICTED: hypothetical protein XP_002344932 [Homo ... 36 0.018
gi|239745514 PREDICTED: hypothetical protein XP_002343509 [Homo ... 36 0.018
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 36 0.023
gi|239755142 PREDICTED: hypothetical protein [Homo sapiens] 36 0.023
gi|55770854 N-methyl-D-aspartate receptor subunit 2C precursor [... 36 0.023
gi|169204928 PREDICTED: hypothetical protein [Homo sapiens] 35 0.030
gi|113423861 PREDICTED: hypothetical protein [Homo sapiens] 35 0.030
gi|239746104 PREDICTED: hypothetical protein XP_002344198 [Homo ... 35 0.030
gi|113423437 PREDICTED: hypothetical protein [Homo sapiens] 35 0.030
gi|54607124 RNA binding motif protein 15B [Homo sapiens] 35 0.030
gi|89941470 ankyrin repeat domain 34 [Homo sapiens] 35 0.030
gi|194578898 hypothetical protein LOC100170841 [Homo sapiens] 35 0.039
gi|147902746 MEX3A protein [Homo sapiens] 35 0.051
gi|5174543 myocyte enhancer factor 2B isoform b [Homo sapiens] 34 0.067
gi|239752764 PREDICTED: hypothetical protein [Homo sapiens] 34 0.067
gi|239747300 PREDICTED: hypothetical protein XP_002346414 [Homo ... 34 0.067
gi|239741124 PREDICTED: hypothetical protein XP_002342114 [Homo ... 34 0.067
gi|123173757 RAVER1 [Homo sapiens] 34 0.067
>gi|239756603 PREDICTED: hypothetical protein [Homo sapiens]
Length = 191
Score = 406 bits (1044), Expect = e-114
Identities = 191/191 (100%), Positives = 191/191 (100%)
Query: 1 MASRDAPRVASSRRTRPRRVARGLCRRRGVLAPAGWGFLGGGRRPWAVPDPVRLTLFPSC 60
MASRDAPRVASSRRTRPRRVARGLCRRRGVLAPAGWGFLGGGRRPWAVPDPVRLTLFPSC
Sbjct: 1 MASRDAPRVASSRRTRPRRVARGLCRRRGVLAPAGWGFLGGGRRPWAVPDPVRLTLFPSC 60
Query: 61 CLRPPEPVQGWGSGGGWRKRARGKPVGLRRLPGPAPPSLPPNQARPALRMSTAARPRVKP 120
CLRPPEPVQGWGSGGGWRKRARGKPVGLRRLPGPAPPSLPPNQARPALRMSTAARPRVKP
Sbjct: 61 CLRPPEPVQGWGSGGGWRKRARGKPVGLRRLPGPAPPSLPPNQARPALRMSTAARPRVKP 120
Query: 121 GRFPRAPSSVPASDDWKGCPCSAAFGDLSALEEGHLKAGARGEWEGLLLVSPGHLSPERW 180
GRFPRAPSSVPASDDWKGCPCSAAFGDLSALEEGHLKAGARGEWEGLLLVSPGHLSPERW
Sbjct: 121 GRFPRAPSSVPASDDWKGCPCSAAFGDLSALEEGHLKAGARGEWEGLLLVSPGHLSPERW 180
Query: 181 RKTRLDALTRS 191
RKTRLDALTRS
Sbjct: 181 RKTRLDALTRS 191
>gi|239744417 PREDICTED: similar to hCG2023245 [Homo sapiens]
Length = 364
Score = 41.2 bits (95), Expect = 5e-04
Identities = 36/122 (29%), Positives = 46/122 (37%), Gaps = 13/122 (10%)
Query: 29 GVLAPAGWGFLGGGRRPWAVPDPVRLTLFPSCCL--------RPPEPVQGWGSGGGWRKR 80
G+ P+G +G GRR A P+ S CL RP V G+ G R
Sbjct: 116 GIGRPSGCNLVGAGRRCRAWPERAWPQAGDSDCLGQGRRAQRRPGPGVSAVGASGQQRAP 175
Query: 81 ARGKPVGLRRLPGPAPPSLPPNQARPALRMSTAARPRVKPGRFPRAPSSVPASDDWKGCP 140
+ P P P S P PALR ++A + PG PSS P + G
Sbjct: 176 ESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPG-----PSSSPGAGRAPGAM 230
Query: 141 CS 142
S
Sbjct: 231 AS 232
>gi|239754052 PREDICTED: hypothetical protein [Homo sapiens]
Length = 296
Score = 40.0 bits (92), Expect = 0.001
Identities = 44/132 (33%), Positives = 54/132 (40%), Gaps = 24/132 (18%)
Query: 10 ASSRRTRPRRVARGLCRRRGVLAPAGWGFLGGGRRPW------AVP-DPVRLTLFPS--- 59
A+SR P ARG RR W GGGRR W +P D +L P
Sbjct: 111 AASRSCEP---ARGGGERRRAFPHTKWWRRGGGRRTWGRHTPYGIPADRRQLDASPGSRR 167
Query: 60 ---CCLRPPEPVQGWGSGGGWRKRARGKPVGLRRLPGPAPPSLPPNQARPALRMSTAARP 116
C RP QG + GG R+R+ + L GPA PS P PA+R R
Sbjct: 168 PALVCARPSP--QGPPTAGGPRRRSVSAGLVLAGARGPARPSRP----HPAVRAGERERT 221
Query: 117 RVK--PGRFPRA 126
++ PG RA
Sbjct: 222 HLRRAPGAAGRA 233
>gi|239742598 PREDICTED: hypothetical protein [Homo sapiens]
Length = 296
Score = 40.0 bits (92), Expect = 0.001
Identities = 44/132 (33%), Positives = 54/132 (40%), Gaps = 24/132 (18%)
Query: 10 ASSRRTRPRRVARGLCRRRGVLAPAGWGFLGGGRRPW------AVP-DPVRLTLFPS--- 59
A+SR P ARG RR W GGGRR W +P D +L P
Sbjct: 111 AASRSCEP---ARGGGERRRAFPHTKWWRRGGGRRTWGRHTPYGIPADRRQLDASPGSRR 167
Query: 60 ---CCLRPPEPVQGWGSGGGWRKRARGKPVGLRRLPGPAPPSLPPNQARPALRMSTAARP 116
C RP QG + GG R+R+ + L GPA PS P PA+R R
Sbjct: 168 PALVCARPSP--QGPPTAGGPRRRSVSAGLVLAGARGPARPSRP----HPAVRAGERERT 221
Query: 117 RVK--PGRFPRA 126
++ PG RA
Sbjct: 222 HLRRAPGAAGRA 233
>gi|239755571 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 39.7 bits (91), Expect = 0.002
Identities = 35/118 (29%), Positives = 44/118 (37%), Gaps = 13/118 (11%)
Query: 33 PAGWGFLGGGRRPWAVPDPVRLTLFPSCCL--------RPPEPVQGWGSGGGWRKRARGK 84
P+G +G GRR A P+ S CL RP V G+ G R +
Sbjct: 17 PSGCNLVGAGRRCRAWPERAWPQAGDSDCLGQGRRAQRRPGPGVSAVGASGQQRAPESNE 76
Query: 85 PVGLRRLPGPAPPSLPPNQARPALRMSTAARPRVKPGRFPRAPSSVPASDDWKGCPCS 142
P P P S P PALR ++A + PG PSS P + G S
Sbjct: 77 RPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPG-----PSSSPGAGRAPGAMAS 129
>gi|239754368 PREDICTED: hypothetical protein [Homo sapiens]
Length = 336
Score = 37.0 bits (84), Expect = 0.010
Identities = 34/105 (32%), Positives = 43/105 (40%), Gaps = 10/105 (9%)
Query: 66 EPVQGWGSGGGWRK--RARGKPVGLRRLPGPAPPSLPPNQARPALRMSTAARPRVKPGRF 123
EP G G GW R R + G RR PGP PP+L ++R + RP G
Sbjct: 199 EPRAAAGQGRGWLPPCRLRLQDSGPRRRPGPGPPALRSGRSR------GSGRPPDSAGAA 252
Query: 124 PRAPSSVPASDDWKGCPCSAAFGDLSALEEGHLKAGARGEWEGLL 168
S A+ +G P ++F SAL E L W LL
Sbjct: 253 GTGGSGWAAA--LRGWPAPSSFAASSALPEECLPPRRGCGWAELL 295
>gi|239748915 PREDICTED: hypothetical protein XP_002346855 [Homo
sapiens]
Length = 336
Score = 37.0 bits (84), Expect = 0.010
Identities = 34/105 (32%), Positives = 43/105 (40%), Gaps = 10/105 (9%)
Query: 66 EPVQGWGSGGGWRK--RARGKPVGLRRLPGPAPPSLPPNQARPALRMSTAARPRVKPGRF 123
EP G G GW R R + G RR PGP PP+L ++R + RP G
Sbjct: 199 EPRAAAGQGRGWLPPCRLRLQDSGPRRRPGPGPPALRSGRSR------GSGRPPDSAGAA 252
Query: 124 PRAPSSVPASDDWKGCPCSAAFGDLSALEEGHLKAGARGEWEGLL 168
S A+ +G P ++F SAL E L W LL
Sbjct: 253 GTGGSGWAAA--LRGWPAPSSFAASSALPEECLPPRRGCGWAELL 295
>gi|239742939 PREDICTED: hypothetical protein XP_002342693 [Homo
sapiens]
Length = 321
Score = 37.0 bits (84), Expect = 0.010
Identities = 34/105 (32%), Positives = 43/105 (40%), Gaps = 10/105 (9%)
Query: 66 EPVQGWGSGGGWRK--RARGKPVGLRRLPGPAPPSLPPNQARPALRMSTAARPRVKPGRF 123
EP G G GW R R + G RR PGP PP+L ++R + RP G
Sbjct: 199 EPRAAAGQGRGWLPPCRLRLQDSGPRRRPGPGPPALRSGRSR------GSGRPPDSAGAA 252
Query: 124 PRAPSSVPASDDWKGCPCSAAFGDLSALEEGHLKAGARGEWEGLL 168
S A+ +G P ++F SAL E L W LL
Sbjct: 253 GTGGSGWAAA--LRGWPAPSSFAASSALPEECLPPRRGCGWAELL 295
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 37.0 bits (84), Expect = 0.010
Identities = 28/71 (39%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
Query: 63 RPPEPVQGWGSGGGWRKRARGKPVGLRRLPGPAPPSLPPNQARPALRMSTAARP--RVKP 120
RPP P G G RG P RLP PAPP +PP RP + P P
Sbjct: 466 RPPGPPPGPPPGLPPGPPPRGPPP---RLPPPAPPGIPP--PRPGMMRPPLVPPLGPAPP 520
Query: 121 GRFPRAPSSVP 131
G FP AP P
Sbjct: 521 GLFPPAPLPNP 531
Score = 32.0 bits (71), Expect = 0.33
Identities = 28/82 (34%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
Query: 48 VPDPVRLTLFPSCCLRPPEPVQGWGSGGGWRKRARGKPVGLRRLPGPAPPSLPPN--QAR 105
+P P L P+ LRPP P G G +P G+ L GP P LPP R
Sbjct: 407 MPGPPPLGPPPAPPLRPPGPPTGLPPGPPPGAPPFLRPPGMPGLRGPLPRLLPPGPPPGR 466
Query: 106 PALRMSTAARPRVKPGRFPRAP 127
P P + PG PR P
Sbjct: 467 PP-GPPPGPPPGLPPGPPPRGP 487
Score = 30.0 bits (66), Expect = 1.3
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 8/49 (16%)
Query: 91 LPGPAPPSL--------PPNQARPALRMSTAARPRVKPGRFPRAPSSVP 131
LPG PPS+ PP +A L + PR+ PGR P P P
Sbjct: 158 LPGAQPPSILKKTSAYGPPTRAVSILPLLGHGVPRLPPGRKPPGPPPGP 206
>gi|239757244 PREDICTED: hypothetical protein [Homo sapiens]
Length = 190
Score = 36.6 bits (83), Expect = 0.014
Identities = 32/108 (29%), Positives = 44/108 (40%), Gaps = 21/108 (19%)
Query: 63 RPPEPVQG-WGSGGGWR-KRARGKPVGLRRLPGPAPPSLPPNQARPALRMSTAARPRVKP 120
R P+P Q GS GG R +R R P G L GPAPP AR R P
Sbjct: 14 RQPDPRQAAGGSDGGTRARRIRAHPGGEGGLSGPAPP----------------ARRRAYP 57
Query: 121 GRFPRAPSSVPASDDWKGCPCSAAFGDLSALEEGH--LKAGARGEWEG 166
+ PR + W+ C + + L+A+ G + + +W G
Sbjct: 58 LQ-PRPTPRLTGRSSWRACTSTCSPTTLTAISSGEKCFTSSSTEKWPG 104
>gi|239751752 PREDICTED: hypothetical protein [Homo sapiens]
Length = 211
Score = 36.6 bits (83), Expect = 0.014
Identities = 32/108 (29%), Positives = 44/108 (40%), Gaps = 21/108 (19%)
Query: 63 RPPEPVQG-WGSGGGWR-KRARGKPVGLRRLPGPAPPSLPPNQARPALRMSTAARPRVKP 120
R P+P Q GS GG R +R R P G L GPAPP AR R P
Sbjct: 35 RQPDPRQAAGGSDGGTRARRIRAHPGGEGGLSGPAPP----------------ARRRAYP 78
Query: 121 GRFPRAPSSVPASDDWKGCPCSAAFGDLSALEEGH--LKAGARGEWEG 166
+ PR + W+ C + + L+A+ G + + +W G
Sbjct: 79 LQ-PRPTPRLTGRSSWRACTSTCSPTTLTAISSGEKCFTSSSTEKWPG 125
>gi|239746252 PREDICTED: hypothetical protein XP_002343716 [Homo
sapiens]
Length = 211
Score = 36.6 bits (83), Expect = 0.014
Identities = 32/108 (29%), Positives = 44/108 (40%), Gaps = 21/108 (19%)
Query: 63 RPPEPVQG-WGSGGGWR-KRARGKPVGLRRLPGPAPPSLPPNQARPALRMSTAARPRVKP 120
R P+P Q GS GG R +R R P G L GPAPP AR R P
Sbjct: 35 RQPDPRQAAGGSDGGTRARRIRAHPGGEGGLSGPAPP----------------ARRRAYP 78
Query: 121 GRFPRAPSSVPASDDWKGCPCSAAFGDLSALEEGH--LKAGARGEWEG 166
+ PR + W+ C + + L+A+ G + + +W G
Sbjct: 79 LQ-PRPTPRLTGRSSWRACTSTCSPTTLTAISSGEKCFTSSSTEKWPG 125
>gi|239756550 PREDICTED: hypothetical protein XP_002344932 [Homo
sapiens]
Length = 177
Score = 36.2 bits (82), Expect = 0.018
Identities = 54/173 (31%), Positives = 63/173 (36%), Gaps = 46/173 (26%)
Query: 11 SSRRTRPRRVAR---GLCRRRGVLAPAGWGFLGG-GRRPWAVPDPVRL---TLFP----- 58
S+R RP +A G RRG L G GRR +P P+ L +L P
Sbjct: 17 SARTVRPAMLAGLGPGPSPRRGRLPSGGLRLRARPGRRALGLPSPLELAAPSLVPNASAS 76
Query: 59 ----SCCLRPPEPVQGWGSGGGWRKRARGKPVGLRRLPGPAPPSLPPNQARPALRMSTAA 114
SC PP PV G WR R P P P S PA T A
Sbjct: 77 PRPVSCRRAPPRPVPG---AARWRGR-----------PEPRPGS-------PAGPAPTRA 115
Query: 115 RPRVKPGRFPRAPSSVPASDDWKGCPCSAAFGDLSALEEGHLKAGARGEWEGL 167
RP PGR S+ PA + A GD E L+ ARG E +
Sbjct: 116 RPLGAPGR-----SAPPARRRERELGTDARVGD----GERELRPDARGRAEAV 159
>gi|239745514 PREDICTED: hypothetical protein XP_002343509 [Homo
sapiens]
Length = 177
Score = 36.2 bits (82), Expect = 0.018
Identities = 54/173 (31%), Positives = 63/173 (36%), Gaps = 46/173 (26%)
Query: 11 SSRRTRPRRVAR---GLCRRRGVLAPAGWGFLGG-GRRPWAVPDPVRL---TLFP----- 58
S+R RP +A G RRG L G GRR +P P+ L +L P
Sbjct: 17 SARTVRPAMLAGLGPGPSPRRGRLPSGGLRLRARPGRRALGLPSPLELAAPSLVPNASAS 76
Query: 59 ----SCCLRPPEPVQGWGSGGGWRKRARGKPVGLRRLPGPAPPSLPPNQARPALRMSTAA 114
SC PP PV G WR R P P P S PA T A
Sbjct: 77 PRPVSCRRAPPRPVPG---AARWRGR-----------PEPRPGS-------PAGPAPTRA 115
Query: 115 RPRVKPGRFPRAPSSVPASDDWKGCPCSAAFGDLSALEEGHLKAGARGEWEGL 167
RP PGR S+ PA + A GD E L+ ARG E +
Sbjct: 116 RPLGAPGR-----SAPPARRRERELGTDARVGD----GERELRPDARGRAEAV 159
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 35.8 bits (81), Expect = 0.023
Identities = 27/68 (39%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 64 PPEPVQGWGSGGGWRKRARGKPVGLRRLPGPAPPSLPPNQARPALRMSTAARPRVKPGRF 123
PP PV G+G G +G P PGP PP PP P L T A P PG
Sbjct: 296 PPPPVPGYGPPPGPPPPQQGPPPP----PGPFPPR-PPGPLGPPL---TLAPPPHLPGPP 347
Query: 124 PRAPSSVP 131
P AP P
Sbjct: 348 PGAPPPAP 355
Score = 29.6 bits (65), Expect = 1.7
Identities = 22/58 (37%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 74 GGGWRKRARGKPVGLRRLPGPAPPSLPPNQARPALRMSTAARPRVKPGRFPRAPSSVP 131
GG R R G G R PGPA P PP P T RP + P P P P
Sbjct: 200 GGRGRGRFPGAVPGGDRFPGPAGPGGPP---PPFPAGQTPPRPPLGPPGPPGPPGPPP 254
>gi|239755142 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 35.8 bits (81), Expect = 0.023
Identities = 49/162 (30%), Positives = 61/162 (37%), Gaps = 22/162 (13%)
Query: 13 RRTRPRRVARGLCRRRGVLAP-AGWGFLGGGRRPWAVPDPVRLTLFPSCCLRPPEPVQGW 71
RR R R RR+G+LA AG LGGGRR +P PS E ++G
Sbjct: 19 RRGERRPGLRSEGRRKGLLAAEAGGAVLGGGRRAGRRAEPPE----PSYSRERRETMEG- 73
Query: 72 GSGGGWRKRARGKPVGLRRLPGPAPPSLPPNQAR--------PALRMSTAARPRVKPGRF 123
GGW P P A +L P R PA R S A RPR+ G
Sbjct: 74 --KGGWSAALGSLPPP----PAAACTALKPATRRGSCSAPLGPARRCS-ARRPRLHQGGA 126
Query: 124 PRAPSSVPASDDWKGCPCSAAFGDLSALEEGHLKAGARGEWE 165
R + + + + P A LS + G G R E
Sbjct: 127 GRLAAGGAEAGE-RRSPNRGATSSLSPIARGAADTGVRSAAE 167
>gi|55770854 N-methyl-D-aspartate receptor subunit 2C precursor [Homo
sapiens]
Length = 1233
Score = 35.8 bits (81), Expect = 0.023
Identities = 30/89 (33%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 36 WGFLGGGRRPWAVPDPVRLTLFPSCCLRPPEPVQGWGSGGGWRKRARGKPVGLRRLPGPA 95
WG GG R P P P + PS CL P+P S GW G+ +RR P
Sbjct: 923 WG--GGRRAPPPSPCPTPRS-GPSPCLPTPDPPPE-PSPTGWGPPDGGRAALVRR--APQ 976
Query: 96 PPSLPPNQARPALRMSTAARPRVKPGRFP 124
PP PP P +S +R R+P
Sbjct: 977 PPGRPPTPGPPLSDVSRVSRRPAWEARWP 1005
>gi|169204928 PREDICTED: hypothetical protein [Homo sapiens]
Length = 215
Score = 35.4 bits (80), Expect = 0.030
Identities = 33/111 (29%), Positives = 42/111 (37%), Gaps = 21/111 (18%)
Query: 7 PRVASSRRTRPRRVARGLCRRRGVLAPAGWGFLGGGRRPWAVPDPVRLTLFPSCCLRPPE 66
P VA++ R R A GV +P W P P P T + +R +
Sbjct: 111 PHVAAAARPRAETAAV----TDGVTSPRAWP------PPPPPPLPPAPTRHGNTDVRASQ 160
Query: 67 PVQGWGSGGGWRKRARG-----------KPVGLRRLPGPAPPSLPPNQARP 106
P+ G G G R R RG K G+RR P PP P +RP
Sbjct: 161 PIAGCGRREGARWRGRGQRQAKALRGRKKGRGVRRRKSPPPPLTPATLSRP 211
>gi|113423861 PREDICTED: hypothetical protein [Homo sapiens]
Length = 215
Score = 35.4 bits (80), Expect = 0.030
Identities = 33/111 (29%), Positives = 42/111 (37%), Gaps = 21/111 (18%)
Query: 7 PRVASSRRTRPRRVARGLCRRRGVLAPAGWGFLGGGRRPWAVPDPVRLTLFPSCCLRPPE 66
P VA++ R R A GV +P W P P P T + +R +
Sbjct: 111 PHVAAAARPRAETAAV----TDGVTSPRAWP------PPPPPPLPPAPTRHGNTDVRASQ 160
Query: 67 PVQGWGSGGGWRKRARG-----------KPVGLRRLPGPAPPSLPPNQARP 106
P+ G G G R R RG K G+RR P PP P +RP
Sbjct: 161 PIAGCGRREGARWRGRGQRQAKALRGRKKGRGVRRRKSPPPPLTPATLSRP 211
>gi|239746104 PREDICTED: hypothetical protein XP_002344198 [Homo
sapiens]
Length = 398
Score = 35.4 bits (80), Expect = 0.030
Identities = 45/133 (33%), Positives = 51/133 (38%), Gaps = 17/133 (12%)
Query: 14 RTRPRRVARGLCRRR------GVLAPAGWGF---LGGGRRPWAVPDPVRLTLFPSCCLRP 64
RTR R G+ RR G L P GF G GR A P +L P
Sbjct: 87 RTRQGREDAGVGRRNRDPAEPGSLRPTSLGFPARAGQGRVQGAAPGR-KLRGEPKTPPGR 145
Query: 65 PEPVQGWGSGGGWRKRARGKPVG----LRRLPGPAPPSLPPNQARPALRMSTAARPRVKP 120
P G SG G R A +G +R PGP P LPP P LR + RP
Sbjct: 146 SGPSGGVRSGAGHRAAAAEHQLGAGFSVRNGPGP-PARLPPAPPGPLLRPARPPRPYFPR 204
Query: 121 GRFPRAPSSVPAS 133
R P P+ P S
Sbjct: 205 PRTP--PTCEPPS 215
>gi|113423437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 215
Score = 35.4 bits (80), Expect = 0.030
Identities = 33/111 (29%), Positives = 42/111 (37%), Gaps = 21/111 (18%)
Query: 7 PRVASSRRTRPRRVARGLCRRRGVLAPAGWGFLGGGRRPWAVPDPVRLTLFPSCCLRPPE 66
P VA++ R R A GV +P W P P P T + +R +
Sbjct: 111 PHVAAAARPRAETAAV----TDGVTSPRAWP------PPPPPPLPPAPTRHGNTDVRASQ 160
Query: 67 PVQGWGSGGGWRKRARG-----------KPVGLRRLPGPAPPSLPPNQARP 106
P+ G G G R R RG K G+RR P PP P +RP
Sbjct: 161 PIAGCGRREGARWRGRGQRQAKALRGRKKGRGVRRRKSPPPPLTPATLSRP 211
>gi|54607124 RNA binding motif protein 15B [Homo sapiens]
Length = 890
Score = 35.4 bits (80), Expect = 0.030
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 70 GWGSGGGWRK-RARGKP--VGLRRLPGPAPPSLPPNQARPALRMSTAARPRVKPGRFPRA 126
G G+GGG R +A G P G+ P PP PP A PA S+AA P K
Sbjct: 87 GSGAGGGGRGGKASGDPGASGMSPRASPLPPPPPPPGAEPACPGSSAAAPEYKTLLISSL 146
Query: 127 PSSVPA 132
++PA
Sbjct: 147 SPALPA 152
>gi|89941470 ankyrin repeat domain 34 [Homo sapiens]
Length = 496
Score = 35.4 bits (80), Expect = 0.030
Identities = 42/149 (28%), Positives = 54/149 (36%), Gaps = 28/149 (18%)
Query: 50 DPVRLTLFPSCCLRPPEPVQGWGSGGGWRKRARGKPVGLRRLPGPAPPSLPPNQARPALR 109
DP P PP+P+ KR +P GL P P +PP + RP +
Sbjct: 224 DPSPSEPLPKPPRHPPKPL----------KRLNSEPWGLVAPPQP----VPPTEGRPGIE 269
Query: 110 MSTA--------ARPRVKPGRFPRAPSSVP--ASDDWKGCPCSAAFGDLSALEEGHLKAG 159
TA RPR+ P P A G P S A E G +G
Sbjct: 270 RLTAEFNGLTLTGRPRLSRRHSTEGPEDPPPWAEKVTSGGPLSRRNTAPEAQESGP-PSG 328
Query: 160 AR---GEWEGLLLVSPGHLSPERWRKTRL 185
R E + L +PGHL P+ +RL
Sbjct: 329 LRQKLSRMEPVELDTPGHLCPDSPESSRL 357
>gi|194578898 hypothetical protein LOC100170841 [Homo sapiens]
Length = 379
Score = 35.0 bits (79), Expect = 0.039
Identities = 39/135 (28%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 25 CRRRGVLAPAGWGFLGGGRRPWAVPDPVRLTLFP-----SCCLRPPEPVQGWGSGGGWRK 79
C RRG G GF G R A P P S PP P G +
Sbjct: 113 CPRRGEEEEGGGGFPHFGVRSCAPPGRCPAPPHPRESTTSFASAPPRPAPGL-------E 165
Query: 80 RARGKPVGLRRLPGPAPPSLPPNQARPALRMSTAARPRVK------PGRFPRAPSSVPAS 133
RG + P PPS P + TA RP + G P A PA+
Sbjct: 166 PQRGPAASPPQEPSSRPPSPPAGLSTEPAGPGTAPRPFLPGQPAEVDGNPPPAAPEAPAA 225
Query: 134 DDWKGCPCSAAFGDL 148
P AA GDL
Sbjct: 226 SPSTASPAPAAPGDL 240
>gi|147902746 MEX3A protein [Homo sapiens]
Length = 520
Score = 34.7 bits (78), Expect = 0.051
Identities = 35/129 (27%), Positives = 47/129 (36%), Gaps = 20/129 (15%)
Query: 17 PRRVARGLCRRRGVLAPAGWGFLGGGRRPWAVPDP--VRLTLFPSCCL---RPPEPVQGW 71
P V G+ R G G F G + + D ++L L C L PP P G
Sbjct: 2 PSLVVSGIMERNGGFGELGC-FGGSAKDRGLLEDERALQLALDQLCLLGLGEPPAPTAGE 60
Query: 72 GSGGGWRKRARGKPVGLRRLPGPAPPSLPPNQARPALRMSTAARPRVKP-GRFPRAPSSV 130
GGG PA P+ PP A P + A P P + P+ P++
Sbjct: 61 DGGGGGGG-------------APAQPAAPPQPAPPPPPAAPPAAPTAAPAAQTPQPPTAP 107
Query: 131 PASDDWKGC 139
+ D K C
Sbjct: 108 KGASDAKLC 116
>gi|5174543 myocyte enhancer factor 2B isoform b [Homo sapiens]
Length = 365
Score = 34.3 bits (77), Expect = 0.067
Identities = 37/102 (36%), Positives = 42/102 (41%), Gaps = 18/102 (17%)
Query: 83 GKPVGL----RRLPGP-APPSLPPNQARPALRMSTAARPRVKPGRFPRAPSSVPASDDWK 137
G PVG RR+P P APP PP A +S + RP P F R PS +P
Sbjct: 254 GPPVGAEAWARRVPQPAAPPRRPPQSAS---SLSASLRPPGAPATFLR-PSPIP------ 303
Query: 138 GCPCSAAFGDLSALEEGHLKAGARGEWEGLLLVSPGHLSPER 179
C + L L G AG G SPG SPER
Sbjct: 304 -CSSPGPWQSLCGL--GPPCAGCPWPTAGPGRRSPGGTSPER 342
>gi|239752764 PREDICTED: hypothetical protein [Homo sapiens]
Length = 370
Score = 34.3 bits (77), Expect = 0.067
Identities = 45/146 (30%), Positives = 54/146 (36%), Gaps = 23/146 (15%)
Query: 6 APRVASSRRTRPRRVARGLCRRRGVLAPAGWGFLGGGRRPWA-VPDPVRLTLFPSCCLRP 64
+P S R R RR + RR G G L G A P R L R
Sbjct: 52 SPAQYSQTRLRRRRQGAVIVGRRRACPGRGRGGLPGAAALGAGAQQPRRRRLAQPPGSRA 111
Query: 65 PEPVQGWGSGGGWRKRA-------RGKPVGLRR---LPGPAPPSLPPNQARPALRMSTAA 114
P V GG R+RA R +P L LP P L P+ AR LR+
Sbjct: 112 PLQV-----GGAPRRRAHLTGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRL---- 162
Query: 115 RPRVKPGRFPRAPSSVPASDDWK-GC 139
R+ R PR PA+ W+ GC
Sbjct: 163 --RLASARLPRGLPPAPAAGLWRAGC 186
>gi|239747300 PREDICTED: hypothetical protein XP_002346414 [Homo
sapiens]
Length = 470
Score = 34.3 bits (77), Expect = 0.067
Identities = 45/146 (30%), Positives = 54/146 (36%), Gaps = 23/146 (15%)
Query: 6 APRVASSRRTRPRRVARGLCRRRGVLAPAGWGFLGGGRRPWA-VPDPVRLTLFPSCCLRP 64
+P S R R RR + RR G G L G A P R L R
Sbjct: 52 SPAQYSQTRLRRRRQGAVIVGRRRACPGRGRGGLPGAAALGAGAQQPRRRRLAQPPGSRA 111
Query: 65 PEPVQGWGSGGGWRKRA-------RGKPVGLRR---LPGPAPPSLPPNQARPALRMSTAA 114
P V GG R+RA R +P L LP P L P+ AR LR+
Sbjct: 112 PLQV-----GGAPRRRAHLTGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRL---- 162
Query: 115 RPRVKPGRFPRAPSSVPASDDWK-GC 139
R+ R PR PA+ W+ GC
Sbjct: 163 --RLASARLPRGLPPAPAAGLWRAGC 186
>gi|239741124 PREDICTED: hypothetical protein XP_002342114 [Homo
sapiens]
Length = 470
Score = 34.3 bits (77), Expect = 0.067
Identities = 45/146 (30%), Positives = 54/146 (36%), Gaps = 23/146 (15%)
Query: 6 APRVASSRRTRPRRVARGLCRRRGVLAPAGWGFLGGGRRPWA-VPDPVRLTLFPSCCLRP 64
+P S R R RR + RR G G L G A P R L R
Sbjct: 52 SPAQYSQTRLRRRRQGAVIVGRRRACPGRGRGGLPGAAALGAGAQQPRRRRLAQPPGSRA 111
Query: 65 PEPVQGWGSGGGWRKRA-------RGKPVGLRR---LPGPAPPSLPPNQARPALRMSTAA 114
P V GG R+RA R +P L LP P L P+ AR LR+
Sbjct: 112 PLQV-----GGAPRRRAHLTGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRL---- 162
Query: 115 RPRVKPGRFPRAPSSVPASDDWK-GC 139
R+ R PR PA+ W+ GC
Sbjct: 163 --RLASARLPRGLPPAPAAGLWRAGC 186
>gi|123173757 RAVER1 [Homo sapiens]
Length = 756
Score = 34.3 bits (77), Expect = 0.067
Identities = 49/184 (26%), Positives = 63/184 (34%), Gaps = 38/184 (20%)
Query: 35 GWGFLGGGRRPWAVPDPVRLTLFPSCCLRPPEPVQGWGSGGGWRKRARG-KPVGLRRLPG 93
GWG G RRP P PP P G S ++ ++R P+ RLP
Sbjct: 545 GWGGAGRSRRPAEGPPT-----------NPPAPGGGSSSSKAFQLKSRLLSPLSSARLPP 593
Query: 94 P---------------APPSLPPNQARPALRMSTAARPRVKPG------RFPRAPSSVPA 132
P L + PAL +R ++ P R P
Sbjct: 594 EPGLSDSYSFDYPSDMGPRRLFSHPREPALGPHGPSRHKMSPPPSGFGERSSGGSGGGPL 653
Query: 133 SDDWKGCPCSAAFGDLSA-LEEGHLK----AGARGEWEGLLLVSPGHLSPERWRKTRLDA 187
S + G P S L A L++ HL + G EGLL +SPG KT L
Sbjct: 654 SHFYSGSPTSYFTSGLQAGLKQSHLSKAIGSSPLGSGEGLLGLSPGPNGHSHLLKTPLGG 713
Query: 188 LTRS 191
RS
Sbjct: 714 QKRS 717
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.139 0.471
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,118,735
Number of Sequences: 37866
Number of extensions: 640929
Number of successful extensions: 4978
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 408
Number of HSP's that attempted gapping in prelim test: 4444
Number of HSP's gapped (non-prelim): 883
length of query: 191
length of database: 18,247,518
effective HSP length: 96
effective length of query: 95
effective length of database: 14,612,382
effective search space: 1388176290
effective search space used: 1388176290
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.