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Search of human proteins with 239756595
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756595 PREDICTED: hypothetical protein [Homo sapiens]
(211 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756595 PREDICTED: hypothetical protein [Homo sapiens] 446 e-126
gi|239755981 PREDICTED: hypothetical protein XP_002344766 [Homo ... 37 0.016
gi|239750506 PREDICTED: hypothetical protein XP_002347417 [Homo ... 37 0.016
gi|239744803 PREDICTED: hypothetical protein XP_002343287 [Homo ... 37 0.016
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 35 0.061
gi|169161029 PREDICTED: hypothetical protein [Homo sapiens] 35 0.061
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 35 0.061
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 35 0.061
gi|24432011 progestin and adipoQ receptor family member VI isofo... 34 0.079
gi|116256363 transmembrane protease, serine 13 [Homo sapiens] 34 0.10
gi|157504499 ankyrin repeat domain 47 [Homo sapiens] 33 0.14
gi|7706469 Kruppel-like factor [Homo sapiens] 33 0.18
gi|239756268 PREDICTED: hypothetical protein XP_002344877 [Homo ... 33 0.23
gi|239756028 PREDICTED: hypothetical protein [Homo sapiens] 33 0.23
gi|239752133 PREDICTED: hypothetical protein [Homo sapiens] 33 0.23
gi|239750867 PREDICTED: hypothetical protein XP_002347588 [Homo ... 33 0.23
gi|239746658 PREDICTED: hypothetical protein [Homo sapiens] 33 0.23
gi|239745177 PREDICTED: hypothetical protein XP_002343381 [Homo ... 33 0.23
gi|239757105 PREDICTED: hypothetical protein [Homo sapiens] 32 0.30
gi|239751611 PREDICTED: hypothetical protein XP_002347929 [Homo ... 32 0.30
gi|60460889 Myb protein P42POP [Homo sapiens] 32 0.30
gi|45439359 triple functional domain (PTPRF interacting) [Homo s... 32 0.30
gi|153281158 dual specificity phosphatase 8 [Homo sapiens] 32 0.30
gi|4502827 cholinergic receptor, nicotinic, alpha 4 subunit prec... 32 0.39
gi|122692281 hypothetical protein LOC645369 [Homo sapiens] 32 0.39
gi|47271406 bin3, bicoid-interacting 3 [Homo sapiens] 32 0.39
gi|112734870 hypothetical protein LOC57648 [Homo sapiens] 32 0.39
gi|169217819 PREDICTED: similar to hCG1793095 [Homo sapiens] 32 0.51
gi|56711322 ring finger protein 43 [Homo sapiens] 32 0.51
gi|31324577 molecule interacting with Rab13 [Homo sapiens] 32 0.51
>gi|239756595 PREDICTED: hypothetical protein [Homo sapiens]
Length = 211
Score = 446 bits (1147), Expect = e-126
Identities = 211/211 (100%), Positives = 211/211 (100%)
Query: 1 MAGWVVPSLTPLQDSGGSGGANRSGPRGGLANGIPRKVWTPALAPFTWTRLPSTCPVCVV 60
MAGWVVPSLTPLQDSGGSGGANRSGPRGGLANGIPRKVWTPALAPFTWTRLPSTCPVCVV
Sbjct: 1 MAGWVVPSLTPLQDSGGSGGANRSGPRGGLANGIPRKVWTPALAPFTWTRLPSTCPVCVV 60
Query: 61 RMGLAESWPPTLGGGEALRGAHEFHAVISTSSYLPGACPPALSGSASAAFGRSEPGPCRP 120
RMGLAESWPPTLGGGEALRGAHEFHAVISTSSYLPGACPPALSGSASAAFGRSEPGPCRP
Sbjct: 61 RMGLAESWPPTLGGGEALRGAHEFHAVISTSSYLPGACPPALSGSASAAFGRSEPGPCRP 120
Query: 121 SEGASPWPRTRSSRSPQATALSRARSLCSRMVGSLVSVRCRRTRCCSPRGCPGSVQQWIS 180
SEGASPWPRTRSSRSPQATALSRARSLCSRMVGSLVSVRCRRTRCCSPRGCPGSVQQWIS
Sbjct: 121 SEGASPWPRTRSSRSPQATALSRARSLCSRMVGSLVSVRCRRTRCCSPRGCPGSVQQWIS 180
Query: 181 ALPSLGVWTGQGVSGVRWLGPGKVGVVGERD 211
ALPSLGVWTGQGVSGVRWLGPGKVGVVGERD
Sbjct: 181 ALPSLGVWTGQGVSGVRWLGPGKVGVVGERD 211
>gi|239755981 PREDICTED: hypothetical protein XP_002344766 [Homo
sapiens]
Length = 307
Score = 36.6 bits (83), Expect = 0.016
Identities = 33/112 (29%), Positives = 47/112 (41%), Gaps = 9/112 (8%)
Query: 95 PGACPP-ALSGSASAAFGRSEPG---PCRPSEGASPWPRTRSSRSPQATALSRARSLCSR 150
PG PP AL + + G+ E G RP PW +R P + + S
Sbjct: 58 PGTQPPRALRLAEGSGEGKQEEGRRAQARPRPLRPPWEVRGGARGPCSAPVGSRASSGPG 117
Query: 151 MVGSLVSVRCRRTRCCSPRGCPGSVQQWISALPSLGVWTGQGVSGVRWLGPG 202
+ + + R+T C PR S++ +A S G +G V VR LGPG
Sbjct: 118 LPSAAAARPARKTLTCQPR----SIESPATA-SSAGCGSGPRVPQVRLLGPG 164
>gi|239750506 PREDICTED: hypothetical protein XP_002347417 [Homo
sapiens]
Length = 325
Score = 36.6 bits (83), Expect = 0.016
Identities = 33/112 (29%), Positives = 47/112 (41%), Gaps = 9/112 (8%)
Query: 95 PGACPP-ALSGSASAAFGRSEPG---PCRPSEGASPWPRTRSSRSPQATALSRARSLCSR 150
PG PP AL + + G+ E G RP PW +R P + + S
Sbjct: 76 PGTQPPRALRLAEGSGEGKQEEGRRAQARPRPLRPPWEVRGGARGPCSAPVGSRASSGPG 135
Query: 151 MVGSLVSVRCRRTRCCSPRGCPGSVQQWISALPSLGVWTGQGVSGVRWLGPG 202
+ + + R+T C PR S++ +A S G +G V VR LGPG
Sbjct: 136 LPSAAAARPARKTLTCQPR----SIESPATA-SSAGCGSGPRVPQVRLLGPG 182
>gi|239744803 PREDICTED: hypothetical protein XP_002343287 [Homo
sapiens]
Length = 325
Score = 36.6 bits (83), Expect = 0.016
Identities = 33/112 (29%), Positives = 47/112 (41%), Gaps = 9/112 (8%)
Query: 95 PGACPP-ALSGSASAAFGRSEPG---PCRPSEGASPWPRTRSSRSPQATALSRARSLCSR 150
PG PP AL + + G+ E G RP PW +R P + + S
Sbjct: 76 PGTQPPRALRLAEGSGEGKQEEGRRAQARPRPLRPPWEVRGGARGPCSAPVGSRASSGPG 135
Query: 151 MVGSLVSVRCRRTRCCSPRGCPGSVQQWISALPSLGVWTGQGVSGVRWLGPG 202
+ + + R+T C PR S++ +A S G +G V VR LGPG
Sbjct: 136 LPSAAAARPARKTLTCQPR----SIESPATA-SSAGCGSGPRVPQVRLLGPG 182
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 34.7 bits (78), Expect = 0.061
Identities = 29/94 (30%), Positives = 35/94 (37%), Gaps = 6/94 (6%)
Query: 24 SGPRGGLANGIPRKVWTPALAPFTWTRLPSTCPVCVVRMGLAESWPPTLGGGEA--LRGA 81
SGP GG A P A P W+R P+ G WPP G G A L
Sbjct: 647 SGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPWPPATGPGSADGLCTI 706
Query: 82 HEFH----AVISTSSYLPGACPPALSGSASAAFG 111
+E A + + PG P G A+A G
Sbjct: 707 YETEGPESATPAPGALDPGPSPGTSGGKAAAGAG 740
>gi|169161029 PREDICTED: hypothetical protein [Homo sapiens]
Length = 268
Score = 34.7 bits (78), Expect = 0.061
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 13/84 (15%)
Query: 5 VVPSLTP-LQDSGGS-GGANRSGPRG-----GLANG-IPRKVWTPALAPFTWTRL----- 51
V+P + P L +GG+ GG G RG GL +P V P+L W L
Sbjct: 167 VLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWEALATAAT 226
Query: 52 PSTCPVCVVRMGLAESWPPTLGGG 75
P CP+ ++R G A PP++G G
Sbjct: 227 PRRCPLQLLRAGPALHCPPSVGRG 250
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapiens]
Length = 1124
Score = 34.7 bits (78), Expect = 0.061
Identities = 29/94 (30%), Positives = 35/94 (37%), Gaps = 6/94 (6%)
Query: 24 SGPRGGLANGIPRKVWTPALAPFTWTRLPSTCPVCVVRMGLAESWPPTLGGGEA--LRGA 81
SGP GG A P A P W+R P+ G WPP G G A L
Sbjct: 916 SGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPWPPATGPGSADGLCTI 975
Query: 82 HEFH----AVISTSSYLPGACPPALSGSASAAFG 111
+E A + + PG P G A+A G
Sbjct: 976 YETEGPESATPAPGALDPGPSPGTSGGKAAAGAG 1009
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 34.7 bits (78), Expect = 0.061
Identities = 29/94 (30%), Positives = 35/94 (37%), Gaps = 6/94 (6%)
Query: 24 SGPRGGLANGIPRKVWTPALAPFTWTRLPSTCPVCVVRMGLAESWPPTLGGGEA--LRGA 81
SGP GG A P A P W+R P+ G WPP G G A L
Sbjct: 608 SGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPWPPATGPGSADGLCTI 667
Query: 82 HEFH----AVISTSSYLPGACPPALSGSASAAFG 111
+E A + + PG P G A+A G
Sbjct: 668 YETEGPESATPAPGALDPGPSPGTSGGKAAAGAG 701
>gi|24432011 progestin and adipoQ receptor family member VI isoform
1 [Homo sapiens]
Length = 351
Score = 34.3 bits (77), Expect = 0.079
Identities = 36/119 (30%), Positives = 49/119 (41%), Gaps = 14/119 (11%)
Query: 33 GIPRKVWTPALA-PFTWTRLPSTCPVCVVRMGLAESWPPTLG-GGEALRGAHEFH--AVI 88
G+ + + T A A PF + LP R+GL W G G EAL +H +H +
Sbjct: 73 GLSKVLRTGAFAYPFLFDNLP-----LFYRLGLC--WGRGHGCGQEALSTSHGYHLFCAL 125
Query: 89 STSSYLPGACPPALSGSASAAFGRSEPGPCRPSEGASPWPRTRSSRSPQATALSRARSL 147
T P L+ G PGP R GA +P R + ATA S + S+
Sbjct: 126 LTGFLFASHLPERLAPGRFDYIGEGTPGPAREEAGADAFPEHRMN---WATATSYSTSV 181
>gi|116256363 transmembrane protease, serine 13 [Homo sapiens]
Length = 567
Score = 33.9 bits (76), Expect = 0.10
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 95 PGACPPALSGSASAAFGRSEPGPCRPSEGASPWPRTRSSRSPQATALSRARSLCSRMVGS 154
PG PA + A GR+ PG P++ ASP + + SP +LSR+ S S S
Sbjct: 51 PGRASPAQASPAGTPPGRASPGRASPAQ-ASPAQASPARASPALASLSRSSSGRSSSARS 109
Query: 155 LVSVRCRRTRCCSPRGCP 172
SV TR R P
Sbjct: 110 -ASVTTSPTRVYLVRATP 126
>gi|157504499 ankyrin repeat domain 47 [Homo sapiens]
Length = 821
Score = 33.5 bits (75), Expect = 0.14
Identities = 55/207 (26%), Positives = 79/207 (38%), Gaps = 31/207 (14%)
Query: 7 PSLTPLQDSGGSGGANRSGPRGGLANGIPRKVWTPALAPFTWTRLPSTCPVCVVRMGLAE 66
PSLT G G P G L + + ++ TP PS+ P + +G+
Sbjct: 422 PSLTQESSPGSMDGDRAVAPAGILKSIMKKRDGTPGAQ-------PSSGPKSLQFVGVL- 473
Query: 67 SWPPTLGGGEALRGAHEFHAVISTSSYLPGACPP-ALSGSASAAFGRSEPG-PCRPSEGA 124
GE + E + S GA PP + SGS + G S+ G P PS G
Sbjct: 474 -------NGEYESSSSEDASDSDGDSENGGAEPPGSSSGSGDDSGGGSDSGTPGPPSGGD 526
Query: 125 SPWPRTRSSRSPQATALSRARSLCSRMVGSLVSVRCRRTRCCSPRGCPGS-------VQQ 177
P + PQ A R L R+ + V+++ + +R PRG Q+
Sbjct: 527 IRDPEPEAEAEPQQVAQGRC-ELSPRLREACVALQRQLSR---PRGVASDGGAVRLVAQE 582
Query: 178 WI---SALPSLGVWTGQGVSGVRWLGP 201
W S S + + GVR LGP
Sbjct: 583 WFRVSSQRRSQAEPVARMLEGVRRLGP 609
>gi|7706469 Kruppel-like factor [Homo sapiens]
Length = 355
Score = 33.1 bits (74), Expect = 0.18
Identities = 43/162 (26%), Positives = 55/162 (33%), Gaps = 40/162 (24%)
Query: 3 GWVVPSLTPLQDSGGSGGANRS---GPRGGLANGIPRKVW---------------TPALA 44
G +V + P D GG G GPRG G P TP L+
Sbjct: 118 GRLVKAEPPEADGGGGYGCAPGLTRGPRGLKREGAPGPAASCMRGPGGRPPPPPDTPPLS 177
Query: 45 PFTWTRLPSTCPVCVVRMGLAESWPPTLGG---GEALRGAHE----------FHAVISTS 91
P RLP+ P S+PP GG G G H F + +
Sbjct: 178 PDGPARLPAPGP--------RASFPPPFGGPGFGAPGPGLHYAPPAPPAFGLFDDAAAAA 229
Query: 92 SYLPGACPPALSGSASAAFGRSEPGPCRPSEGASPWPRTRSS 133
+ L G PPA G + E +P G WPR R++
Sbjct: 230 AAL-GLAPPAARGLLTPPASPLELLEAKPKRGRRSWPRKRTA 270
>gi|239756268 PREDICTED: hypothetical protein XP_002344877 [Homo
sapiens]
Length = 252
Score = 32.7 bits (73), Expect = 0.23
Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 11/77 (14%)
Query: 69 PPTLGGGEALRGAHEFHAVISTSSYLPGACPPALS------GSASAAFGRSEPGPCRPS- 121
PP G G+AL A ST + P A PPA + GS + GR E RP+
Sbjct: 142 PPAPGSGQALPADPLLQAAASTLAGRPRAPPPAPAAGQRGLGSGALGLGRREKLAARPAA 201
Query: 122 ----EGASPWPRTRSSR 134
PW R +R
Sbjct: 202 TPRRASRPPWQGCRGAR 218
>gi|239756028 PREDICTED: hypothetical protein [Homo sapiens]
Length = 255
Score = 32.7 bits (73), Expect = 0.23
Identities = 56/208 (26%), Positives = 76/208 (36%), Gaps = 40/208 (19%)
Query: 16 GGSGGANRSGPRGGLA---NGIPRKVWTPALAPFTWTRLPSTCPVCVVRMGLAESWPPTL 72
GG G ++S PRGG + +G P+ W +PS + R G + P
Sbjct: 60 GGRGAGSQSLPRGGASARCDGGPKSQG----GKRGWLSVPS-----LPRGGAS----PQC 106
Query: 73 GGGEALRGAHEFHAVISTSSYLPGACPPALSGSASAAFGRSEPGPCRPSEGASPWPRTRS 132
GG +G + S G PP G A GR + SP P +
Sbjct: 107 DGGPKSQGGKSGWLSVPASR---GVAPPGAMGILRARGGRG-------TGSQSPLPASLG 156
Query: 133 SRSPQATALSRARSLCSRMVGSLVSVR--CRRTRCCSPRGCPGSVQQW--------ISAL 182
P A + RAR R VGS R C T P+ G + W +S
Sbjct: 157 VPPPPAMGVQRARG--GRGVGSESPPRWGCLPTCDGGPKS-QGGKRGWLSVPASWVVSPT 213
Query: 183 PSLGVWTGQGVSGVRWLGPGKVGVVGER 210
P++GV +G GV L P +G R
Sbjct: 214 PAMGVLRARGGRGVA-LSPYLMGGASPR 240
>gi|239752133 PREDICTED: hypothetical protein [Homo sapiens]
Length = 224
Score = 32.7 bits (73), Expect = 0.23
Identities = 26/76 (34%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
Query: 99 PPALSGSASAAFGRSEPGPCRPSEG---ASPWPRTRSSRSPQATALSRARSLCSRMVGSL 155
PPA SG+A+ R PG R S G P P+ R R +A RAR +
Sbjct: 148 PPACSGAATR---REPPGNARQSRGVGAGKPEPQRRPPRGSRAARRPRARRV---FTDPR 201
Query: 156 VSVRCRRTRCCSPRGC 171
R R R +P GC
Sbjct: 202 RHTRHRTRRSVAPPGC 217
>gi|239750867 PREDICTED: hypothetical protein XP_002347588 [Homo
sapiens]
Length = 800
Score = 32.7 bits (73), Expect = 0.23
Identities = 30/95 (31%), Positives = 40/95 (42%), Gaps = 17/95 (17%)
Query: 50 RLPSTCPVCV-VRMGLAESWPPTLGG--GEALRGAHEFHAVISTSSYLPGACPPA----- 101
R+PS+CP+ + +R + PP LG G GA V ++ LP PPA
Sbjct: 237 RMPSSCPMTIFMRCRIRSRSPPLLGSSLGCPRSGAPRMFIVYHVAAGLP-ILPPAGHTLR 295
Query: 102 LSGSASAAFGRS--------EPGPCRPSEGASPWP 128
L + GR+ PGP RPS P P
Sbjct: 296 LPPRSPPRLGRAPHFNGPPAHPGPGRPSTSPCPLP 330
>gi|239746658 PREDICTED: hypothetical protein [Homo sapiens]
Length = 411
Score = 32.7 bits (73), Expect = 0.23
Identities = 26/76 (34%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
Query: 99 PPALSGSASAAFGRSEPGPCRPSEG---ASPWPRTRSSRSPQATALSRARSLCSRMVGSL 155
PPA SG+A+ R PG R S G P P+ R R +A RAR +
Sbjct: 335 PPACSGAATR---REPPGNARQSRGVGAGKPEPQRRPPRGSRAARRPRARRV---FTDPR 388
Query: 156 VSVRCRRTRCCSPRGC 171
R R R +P GC
Sbjct: 389 RHTRHRTRRSVAPPGC 404
>gi|239745177 PREDICTED: hypothetical protein XP_002343381 [Homo
sapiens]
Length = 252
Score = 32.7 bits (73), Expect = 0.23
Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 11/77 (14%)
Query: 69 PPTLGGGEALRGAHEFHAVISTSSYLPGACPPALS------GSASAAFGRSEPGPCRPS- 121
PP G G+AL A ST + P A PPA + GS + GR E RP+
Sbjct: 142 PPAPGSGQALPADPLLQAAASTLAGRPRAPPPAPAAGQRGLGSGALGLGRREKLAARPAA 201
Query: 122 ----EGASPWPRTRSSR 134
PW R +R
Sbjct: 202 TPRRASRPPWQGCRGAR 218
>gi|239757105 PREDICTED: hypothetical protein [Homo sapiens]
Length = 152
Score = 32.3 bits (72), Expect = 0.30
Identities = 31/102 (30%), Positives = 37/102 (36%), Gaps = 12/102 (11%)
Query: 54 TCPVCVVRMGLAESWPPTLGGGEALRGAHEFHAVISTSSYLPGACPP---ALSG------ 104
T P C + G A+S P G L H H L G C P ALS
Sbjct: 12 TFPPCAIGTGNAKSEPSP--GSAHLPTLHHVHQKCKVGD-LSGLCTPSGLALSALEMQSL 68
Query: 105 SASAAFGRSEPGPCRPSEGASPWPRTRSSRSPQATALSRARS 146
S S S P PC P + PRT + P + A+S
Sbjct: 69 SLSGLCTPSRPAPCAPEMQSPRPPRTLHTFRPGSVGTGNAKS 110
>gi|239751611 PREDICTED: hypothetical protein XP_002347929 [Homo
sapiens]
Length = 152
Score = 32.3 bits (72), Expect = 0.30
Identities = 31/102 (30%), Positives = 37/102 (36%), Gaps = 12/102 (11%)
Query: 54 TCPVCVVRMGLAESWPPTLGGGEALRGAHEFHAVISTSSYLPGACPP---ALSG------ 104
T P C + G A+S P G L H H L G C P ALS
Sbjct: 12 TFPPCAIGTGNAKSEPSP--GSAHLPTLHHVHQKCKVGD-LSGLCTPSGLALSALEMQSL 68
Query: 105 SASAAFGRSEPGPCRPSEGASPWPRTRSSRSPQATALSRARS 146
S S S P PC P + PRT + P + A+S
Sbjct: 69 SLSGLCTPSRPAPCAPEMQSPRPPRTLHTFRPGSVGTGNAKS 110
>gi|60460889 Myb protein P42POP [Homo sapiens]
Length = 399
Score = 32.3 bits (72), Expect = 0.30
Identities = 27/86 (31%), Positives = 31/86 (36%), Gaps = 17/86 (19%)
Query: 70 PTLGGGEALRGAHEFHAVISTSSYLPGACPPAL------------SGSASAAFGRSEPGP 117
P + A GA E A S+ P ACP SA + G S P P
Sbjct: 122 PGVAAPGAGAGAEEPPAAPSSQPPPPSACPQRYVLSEDRREDRRADTSAHSKAGSSSPEP 181
Query: 118 -----CRPSEGASPWPRTRSSRSPQA 138
C P EG P P+ R S P A
Sbjct: 182 WARPSCTPQEGGCPRPKERESPPPSA 207
>gi|45439359 triple functional domain (PTPRF interacting) [Homo
sapiens]
Length = 3097
Score = 32.3 bits (72), Expect = 0.30
Identities = 55/190 (28%), Positives = 67/190 (35%), Gaps = 37/190 (19%)
Query: 15 SGGSGGANRSGPRGGLANGIPRKVWTPAL--APFTWTRLPSTCPVCVVRMGLAESWPPTL 72
SGGSGG SG G + G + AP T PS P V PP L
Sbjct: 2299 SGGSGGGGGSGGGGAPSGGSGHSGGPSSCGGAPSTSRSRPSRIPQPV------RHHPPVL 2352
Query: 73 GGGEALRGAHEFHAVISTSSYLPGACPPALSGSASAAFGRSEPGPCRPSEG----ASPWP 128
A A E + TS+ P PP + A + P P +EG A P P
Sbjct: 2353 VSSAASSQA-EADKMSGTSTPGPSLPPPGAAPEAGPSAPSRRP-PGADAEGSEREAEPIP 2410
Query: 129 RTR------------SSRSPQATALSRARSLCSRMVGSLVSVRCRRTRCCSPRGCPGSVQ 176
+ + S SP A A SL + +G R SP P S
Sbjct: 2411 KMKVLESPRKGAANASGSSPDAPAKDARASLGTLPLGK------PRAGAASPLNSPLS-- 2462
Query: 177 QWISALPSLG 186
SA+PSLG
Sbjct: 2463 ---SAVPSLG 2469
>gi|153281158 dual specificity phosphatase 8 [Homo sapiens]
Length = 625
Score = 32.3 bits (72), Expect = 0.30
Identities = 42/137 (30%), Positives = 50/137 (36%), Gaps = 26/137 (18%)
Query: 95 PGACPPA--LSGSASAAFGRSEPGPCRPSEGASPWPRTRSSRSPQATALSRARSLCSRMV 152
PG P L + AA G S P P P A+P R R R P+ A S ARS + +
Sbjct: 416 PGEAPKLCKLDSPSGAALGLSSPSPDSPD--AAPEARPRPRRRPRPPAGSPARS-PAHSL 472
Query: 153 GSLVSVRCRRT-----RCCSPRGCPGSVQ-----QWISALPSLGV------WT-----GQ 191
G R+T S G PG Q W L S G W Q
Sbjct: 473 GLNFGDAARQTPRHGLSALSAPGLPGPGQPAGPGAWAPPLDSPGTPSPDGPWCFSPEGAQ 532
Query: 192 GVSGVRWLGPGKVGVVG 208
G GV + G+ G G
Sbjct: 533 GAGGVLFAPFGRAGAPG 549
>gi|4502827 cholinergic receptor, nicotinic, alpha 4 subunit
precursor [Homo sapiens]
Length = 627
Score = 32.0 bits (71), Expect = 0.39
Identities = 34/119 (28%), Positives = 42/119 (35%), Gaps = 27/119 (22%)
Query: 66 ESWPPTLGGGEALRGAHEFHAVISTSSYLPG-AC-------PPALSGSASAAFGRSEPGP 117
E PP G ++L V PG +C PP A A PGP
Sbjct: 389 EGEPPATSGTQSLHPPSPSFCVPLDVPAEPGPSCKSPSDQLPPQQPLEAEKASPHPSPGP 448
Query: 118 CRPSEGASPWPRTRSSRSPQATALSRARSLCSRMVGSL-------VSVRCRRTRCCSPR 169
CRP G QA L++ARSL + + S V R R + C PR
Sbjct: 449 CRPPHGT------------QAPGLAKARSLSVQHMSSPGEAVEGGVRCRSRSIQYCVPR 495
>gi|122692281 hypothetical protein LOC645369 [Homo sapiens]
Length = 621
Score = 32.0 bits (71), Expect = 0.39
Identities = 33/125 (26%), Positives = 49/125 (39%), Gaps = 12/125 (9%)
Query: 19 GGANRSGPRGGLANGIPRKVWTP-ALAPFTWTRLPSTCPVCVVRMGLAESWPPTLGGGEA 77
GG SG G A + + W P AP + P + PP+L
Sbjct: 264 GGCGGSGDAFGAAAMLAKGSWPPHPAAPSGGRPRGAASPPDLASSPRCPREPPSL----- 318
Query: 78 LRGAHEFHAVISTSSYLPGACPPALSGSASAAFGRSEPGPCRPSEGASPWPRTRSSRSPQ 137
A ++V S + G+ A + +A+AA S P PC P E W R ++ S
Sbjct: 319 ---AEAVYSVYRERSGVAGSRRAAAATAAAAASSCSSPAPCSPPES---WGRQSTASSFV 372
Query: 138 ATALS 142
++LS
Sbjct: 373 DSSLS 377
>gi|47271406 bin3, bicoid-interacting 3 [Homo sapiens]
Length = 689
Score = 32.0 bits (71), Expect = 0.39
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 95 PGACPPALSGSASAAFGRSEPGPCRPSEGASPWPRTRSSRSPQATALSRAR 145
PG C P+ +GS +AA GR PG S + P + PQA + AR
Sbjct: 51 PGRCAPS-AGSPAAAVGRESPGAAATS-SSGPQAQQHRGGGPQAQSHGEAR 99
>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
Length = 1094
Score = 32.0 bits (71), Expect = 0.39
Identities = 29/87 (33%), Positives = 34/87 (39%), Gaps = 8/87 (9%)
Query: 65 AESWPPTLGGGEALRGAHEFHAVISTSS-YLPGACPPALSGSASAAFGRSEPGPCRPSEG 123
A SW P L G + R +S SS Y + P L A P P +
Sbjct: 555 ANSWVPGLSPGGSRRPPRSPERTLSPSSGYSSQSGTPTLPPKGLAG------PPASPGKA 608
Query: 124 ASPWP-RTRSSRSPQATALSRARSLCS 149
P P R S RSP A+ S SLCS
Sbjct: 609 QPPKPERVTSLRSPGASVSSSLTSLCS 635
>gi|169217819 PREDICTED: similar to hCG1793095 [Homo sapiens]
Length = 167
Score = 31.6 bits (70), Expect = 0.51
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 136 PQATALSRARSLCSRMVGSLVSVRCRRTRCCSPRGCPGSVQQWISALPSLGVWTGQGV 193
P A SRA C ++ + S+R RT+C QQ I L GVWT G+
Sbjct: 93 PGGAAASRALQQCGQLQNLIGSLRGLRTKCAVSNDL---TQQEIRTLEVRGVWTPAGL 147
>gi|56711322 ring finger protein 43 [Homo sapiens]
Length = 783
Score = 31.6 bits (70), Expect = 0.51
Identities = 30/110 (27%), Positives = 44/110 (40%), Gaps = 6/110 (5%)
Query: 48 WTRLPSTCPVCVVRMGLAESWPPTLGGGEALR-GAHEFHAVISTSSYLPGACPPA--LSG 104
W TCP+C+ + +S+ +LG + + H + + P A L
Sbjct: 302 WLHQHRTCPLCMFNITEGDSFSQSLGPSRSYQEPGRRLHLIRQHPGHAHYHLPAAYLLGP 361
Query: 105 SASAAFGRSEPGPCRPSEGASPWPRTRSSRSPQATALSRARSLCSRMVGS 154
S SA PGP PS+ P R R P+A A RA R+ G+
Sbjct: 362 SRSAVARPPRPGPFLPSQ--EPGMGPRHHRFPRA-AHPRAPGEQQRLAGA 408
>gi|31324577 molecule interacting with Rab13 [Homo sapiens]
Length = 863
Score = 31.6 bits (70), Expect = 0.51
Identities = 33/112 (29%), Positives = 42/112 (37%), Gaps = 12/112 (10%)
Query: 63 GLAESWPPTLGGGEALRGAHEFHAVISTSSYLPGACPPALSGSASAAFGRSEPGPCRPSE 122
G S P + + + E I T +PG L AS GR P P + SE
Sbjct: 255 GGPSSSAPAGAEADGPKASPEARPQIPTKPRVPGK----LQELASPPAGRPTPAPRKASE 310
Query: 123 GASPWPRTRSSRS--PQATALSRARSLCSRMVGSLVSVRCRRTRCCSPRGCP 172
+P P T RS Q + +A S SLV+ R PRG P
Sbjct: 311 STTPAPPTPRPRSSLQQENLVEQAGS------SSLVNGRLHELPVPKPRGTP 356
Score = 27.7 bits (60), Expect = 7.4
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 99 PPALSGSASAAFGRSEPGPCRPSEGASPWP 128
P A G A G S P P +P GA+P P
Sbjct: 575 PQASPGLAPRTRGSSGPQPAKPCSGATPTP 604
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,669,595
Number of Sequences: 37866
Number of extensions: 579270
Number of successful extensions: 3427
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 171
Number of HSP's that attempted gapping in prelim test: 3294
Number of HSP's gapped (non-prelim): 306
length of query: 211
length of database: 18,247,518
effective HSP length: 98
effective length of query: 113
effective length of database: 14,536,650
effective search space: 1642641450
effective search space used: 1642641450
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.