Guide to the Human Genome
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Name: LOC100292519 Sequence: fasta or formatted (211aa) NCBI GI: 239756595
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         19           2
 C cysteine            4.3          9           2
 D aspartate           0.9          2           1
 E glutamate           2.8          6           1
 F phenylalanine       1.4          3           1
 G glycine            14.2         30           3
 H histidine           0.9          2           1
 I isoleucine          1.4          3           1
 K lysine              0.9          2           1
 L leucine             7.6         16           1
 M methionine          1.4          3           1
 N asparagine          0.9          2           1
 P proline            10.9         23           2
 Q glutamine           2.4          5           2
 R arginine           10.0         21           2
 S serine             13.3         28           2
 T threonine           5.2         11           1
 V valine              8.1         17           2
 W tryptophan          3.8          8           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100292058          0.029   PREDICTED: hypothetical protein XP_002344766 
LOC100290367          0.029   PREDICTED: hypothetical protein XP_002347417 
LOC100288730          0.029   PREDICTED: hypothetical protein XP_002343287 
FLJ22184              0.024   PREDICTED: hypothetical protein FLJ22184 
LOC100133885          0.024   PREDICTED: hypothetical protein 
FLJ22184              0.024   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.024   PREDICTED: hypothetical protein LOC80164 
PAQR6                 0.021   progestin and adipoQ receptor family member VI isofo...
TMPRSS13              0.021   transmembrane protease, serine 13 
KANK3                 0.019   ankyrin repeat domain 47 
KLF2                  0.019   Kruppel-like factor 
LOC100292048          0.019   PREDICTED: hypothetical protein XP_002344877 
LOC100134283          0.019   PREDICTED: hypothetical protein 
LOC728351             0.019   PREDICTED: hypothetical protein 
LOC100289782          0.019   PREDICTED: hypothetical protein XP_002347588 
LOC728351             0.019   PREDICTED: hypothetical protein 
LOC100289126          0.019   PREDICTED: hypothetical protein XP_002343381 
LOC100292631          0.017   PREDICTED: hypothetical protein 
LOC100290201          0.017   PREDICTED: hypothetical protein XP_002347929 
MYPOP                 0.017   Myb protein P42POP 
TRIO                  0.017   triple functional domain (PTPRF interacting) 
DUSP8                 0.017   dual specificity phosphatase 8 
CHRNA4                0.017   cholinergic receptor, nicotinic, alpha 4 subunit prec...
TTMA                  0.017   hypothetical protein LOC645369 
MEPCE                 0.017   bin3, bicoid-interacting 3 
KIAA1522              0.017   hypothetical protein LOC57648 
LOC401847             0.017   PREDICTED: similar to hCG1793095 
RNF43                 0.017   ring finger protein 43 
MICALL1               0.017   molecule interacting with Rab13 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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