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Search of human proteins with 239756550
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756550 PREDICTED: hypothetical protein XP_002344932 [Homo
sapiens]
(177 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756550 PREDICTED: hypothetical protein XP_002344932 [Homo ... 359 e-100
gi|239745514 PREDICTED: hypothetical protein XP_002343509 [Homo ... 359 e-100
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens] 50 8e-07
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 49 2e-06
gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo ... 49 3e-06
gi|239745974 PREDICTED: hypothetical protein XP_002343630 [Homo ... 49 3e-06
gi|239747236 PREDICTED: leucine rich repeat containing 38 [Homo ... 47 7e-06
gi|239741057 PREDICTED: leucine rich repeat containing 38 [Homo ... 47 7e-06
gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens] 47 9e-06
gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens] 47 9e-06
gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens] 47 9e-06
gi|110832843 TBP-associated factor 4 [Homo sapiens] 47 1e-05
gi|58761548 tau tubulin kinase 1 [Homo sapiens] 45 3e-05
gi|19263349 Cbp/p300-interacting transactivator, with Glu/Asp-ri... 45 3e-05
gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo... 45 4e-05
gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo... 45 4e-05
gi|150378545 POM121 membrane glycoprotein (rat)-like [Homo sapiens] 45 4e-05
gi|237757310 synaptojanin 1 isoform a [Homo sapiens] 44 6e-05
gi|237757308 synaptojanin 1 isoform b [Homo sapiens] 44 6e-05
gi|26051278 nuclear pore membrane protein 121 [Homo sapiens] 44 6e-05
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 44 6e-05
gi|119395760 diaphanous 1 isoform 2 [Homo sapiens] 44 7e-05
gi|119395758 diaphanous 1 isoform 1 [Homo sapiens] 44 7e-05
gi|239753975 PREDICTED: hypothetical protein [Homo sapiens] 44 1e-04
gi|21359951 RNA binding motif protein 42 [Homo sapiens] 44 1e-04
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 43 1e-04
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 43 1e-04
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 43 1e-04
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 43 1e-04
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 43 1e-04
>gi|239756550 PREDICTED: hypothetical protein XP_002344932 [Homo
sapiens]
Length = 177
Score = 359 bits (921), Expect = e-100
Identities = 177/177 (100%), Positives = 177/177 (100%)
Query: 1 MVAITFLMSSLARLRVSARTVRPAMLAGLGPGPSPRRGRLPSGGLRLRARPGRRALGLPS 60
MVAITFLMSSLARLRVSARTVRPAMLAGLGPGPSPRRGRLPSGGLRLRARPGRRALGLPS
Sbjct: 1 MVAITFLMSSLARLRVSARTVRPAMLAGLGPGPSPRRGRLPSGGLRLRARPGRRALGLPS 60
Query: 61 PLELAAPSLVPNASASPRPVSCRRAPPRPVPGAARWRGRPEPRPGSPAGPAPTRARPLGA 120
PLELAAPSLVPNASASPRPVSCRRAPPRPVPGAARWRGRPEPRPGSPAGPAPTRARPLGA
Sbjct: 61 PLELAAPSLVPNASASPRPVSCRRAPPRPVPGAARWRGRPEPRPGSPAGPAPTRARPLGA 120
Query: 121 PGRSAPPARRRERELGTDARVGDGERELRPDARGRAEAVCSDHVGAGCATGSVSCAA 177
PGRSAPPARRRERELGTDARVGDGERELRPDARGRAEAVCSDHVGAGCATGSVSCAA
Sbjct: 121 PGRSAPPARRRERELGTDARVGDGERELRPDARGRAEAVCSDHVGAGCATGSVSCAA 177
>gi|239745514 PREDICTED: hypothetical protein XP_002343509 [Homo
sapiens]
Length = 177
Score = 359 bits (921), Expect = e-100
Identities = 177/177 (100%), Positives = 177/177 (100%)
Query: 1 MVAITFLMSSLARLRVSARTVRPAMLAGLGPGPSPRRGRLPSGGLRLRARPGRRALGLPS 60
MVAITFLMSSLARLRVSARTVRPAMLAGLGPGPSPRRGRLPSGGLRLRARPGRRALGLPS
Sbjct: 1 MVAITFLMSSLARLRVSARTVRPAMLAGLGPGPSPRRGRLPSGGLRLRARPGRRALGLPS 60
Query: 61 PLELAAPSLVPNASASPRPVSCRRAPPRPVPGAARWRGRPEPRPGSPAGPAPTRARPLGA 120
PLELAAPSLVPNASASPRPVSCRRAPPRPVPGAARWRGRPEPRPGSPAGPAPTRARPLGA
Sbjct: 61 PLELAAPSLVPNASASPRPVSCRRAPPRPVPGAARWRGRPEPRPGSPAGPAPTRARPLGA 120
Query: 121 PGRSAPPARRRERELGTDARVGDGERELRPDARGRAEAVCSDHVGAGCATGSVSCAA 177
PGRSAPPARRRERELGTDARVGDGERELRPDARGRAEAVCSDHVGAGCATGSVSCAA
Sbjct: 121 PGRSAPPARRRERELGTDARVGDGERELRPDARGRAEAVCSDHVGAGCATGSVSCAA 177
>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 480
Score = 50.4 bits (119), Expect = 8e-07
Identities = 51/176 (28%), Positives = 67/176 (38%), Gaps = 39/176 (22%)
Query: 22 RPAMLAGLGPGPSPRRGRLPSGGLRLRARPGRRALGLPSPLELAAPSLVPNASASPRPVS 81
RP + G P P + G S G R +++P P P E AAP+ P +A P V
Sbjct: 172 RPPVYLGNKPTPPRQEG---SFGGRPKSQP-------PLPQETAAPAPQPGPTAPPARVR 221
Query: 82 -----------------CRRAPPRPVPGA------ARWRGRPEP------RPGSPAGPAP 112
R PP P PGA +R GRP P + +P P
Sbjct: 222 EPGRAEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGG 281
Query: 113 TRARPLGAPGRSAPPARRRERELGTDARVGDGERELRPDARGRAEAVCSDHVGAGC 168
R GA GR+APP+R R+ G G R D G ++ + G C
Sbjct: 282 GGGRNPGALGRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERC 337
Score = 27.3 bits (59), Expect = 7.1
Identities = 49/163 (30%), Positives = 57/163 (34%), Gaps = 36/163 (22%)
Query: 15 RVSARTVRPAMLAGLG-------------PGPSPRRG------RLPSGGLRLRARPGRRA 55
R+ +R RP G G PGP G R P GG PG A
Sbjct: 234 RLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGG--RNPG--A 289
Query: 56 LGLPSPLELA---APSLVPNASASPRPVSCRRA----PPRPVPGAARWRG-RPEPRPGSP 107
LG +P A A L A+ R C RA PP R R R R G
Sbjct: 290 LGRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGG 349
Query: 108 AGPAPTRARPLGAPGRSAPPARRRERELGTDA-RVGDGERELR 149
T A G ++PP RR + E+G R G GE R
Sbjct: 350 GEGEGTHA----THGPASPPGRRHDEEVGAAVLRAGSGEGSRR 388
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 48.9 bits (115), Expect = 2e-06
Identities = 41/140 (29%), Positives = 53/140 (37%), Gaps = 10/140 (7%)
Query: 23 PAMLAGLGPGPSPRRGRLPSGGLRLRARP-------GRRALGLPSPLELAAPSLVPNASA 75
P+++AG GPSP+ G P G +P G + G P P + P + S
Sbjct: 29 PSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSR 88
Query: 76 SPRPVSCRRAPPRPVPGAARWRGRPEPRPGSPAGPAPTRA-RPLGAPGRSAPPARRRERE 134
SPR S P P P P P PG P GP P RP G P P + +
Sbjct: 89 SPR--SPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGD 146
Query: 135 LGTDARVGDGERELRPDARG 154
R G+ + P G
Sbjct: 147 KSRSPRSPPGKPQGPPPQGG 166
Score = 41.2 bits (95), Expect = 5e-04
Identities = 35/112 (31%), Positives = 40/112 (35%), Gaps = 10/112 (8%)
Query: 23 PAMLAGLGPGPSPRRGRLPSGGLRLRARP-------GRRALGLPSPLELAAPSLVPNASA 75
P G GP P+ G P G +P G R G P P + P + S
Sbjct: 90 PRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSR 149
Query: 76 SPRPVSCRRAPPRPVPGAARWRGRPEPRPGSPAGPAPTRA-RPLGAPGRSAP 126
SPR S P P P P P PG P GP P +P G P P
Sbjct: 150 SPR--SPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKP 199
Score = 38.1 bits (87), Expect = 0.004
Identities = 40/143 (27%), Positives = 51/143 (35%), Gaps = 15/143 (10%)
Query: 23 PAMLAGLGPGPSPRRGRLPSGGLRLRARP-------GRRALGLPSPLELAAPSLVPNASA 75
P G GP P+ G P G +P G++ G P P + P P
Sbjct: 151 PRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGPP--PQGDK 208
Query: 76 SPRPVSCRRAPPRPVPGAARWRGRPEPRPGSPAGPAPTRA-RPLG--APGR-SAPPARRR 131
S S P P P P P PG P GP P +P G PG+ PPA+
Sbjct: 209 SRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGG 268
Query: 132 ERELGTDARVGDGERELRPDARG 154
+ AR G+ + P G
Sbjct: 269 SK--SQSARSPPGKPQGPPQQEG 289
Score = 31.6 bits (70), Expect = 0.38
Identities = 32/110 (29%), Positives = 40/110 (36%), Gaps = 15/110 (13%)
Query: 28 GLGPGPSPRRGRLPSGGLRLRARP-------GRRALGLPSPLELAAPSLVPNASASPRPV 80
G GP P+ G P G +P G + G P P + P A +
Sbjct: 217 GKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPP----AQGGSKSQ 272
Query: 81 SCRRAPPRPVPGAARWRGRPEPRPGSPAG--PAPTRARPLGAP-GRSAPP 127
S R P +P G + G P PAG P +A P G P G PP
Sbjct: 273 SARSPPGKP-QGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPP 321
Score = 29.6 bits (65), Expect = 1.4
Identities = 23/91 (25%), Positives = 31/91 (34%), Gaps = 1/91 (1%)
Query: 65 AAPSLVPNASASPRPVSCRRAPPRPVPGAARWRGRPEPRPGSPAGPAPTRA-RPLGAPGR 123
+A +L + S P P P P P P PG P GP P +P G P
Sbjct: 15 SAQNLNEDVSQEESPSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPP 74
Query: 124 SAPPARRRERELGTDARVGDGERELRPDARG 154
P + + R G+ + P G
Sbjct: 75 GKPQGPPPQGDKSRSPRSPPGKPQGPPPQGG 105
>gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo
sapiens]
Length = 870
Score = 48.5 bits (114), Expect = 3e-06
Identities = 51/159 (32%), Positives = 59/159 (37%), Gaps = 27/159 (16%)
Query: 27 AGLGPGPSPRRGRLPSGGLRLRARPGRRALGLPSPLELAAPSLVPNASASPRPVSCRRAP 86
A L P RG P G R R R + L AP P AS + P RAP
Sbjct: 716 ADLADRAFPVRGAGPIAGRRRR-----RGWTFAAALRKGAPREQPPASPAASPCQAPRAP 770
Query: 87 PRPVPGAARWRGR-----PEPRPGSPA-------GPAPTRARPLGAPGR----SAPPARR 130
+ A R RGR P P P +P P P R+R LG P + +P R
Sbjct: 771 EKETE-APRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGLGVPSQQGPTGSPGCRD 829
Query: 131 RERELGTDARVGDGERELR-----PDARGRAEAVCSDHV 164
R A G E LR P RA AVC H+
Sbjct: 830 RASAPRAGAEAGSMETFLRNGGLYPPPSPRAPAVCVQHL 868
Score = 36.2 bits (82), Expect = 0.015
Identities = 46/150 (30%), Positives = 60/150 (40%), Gaps = 19/150 (12%)
Query: 19 RTVRPAMLA---GLGPGPSPRRGRLPSGGLRLRARPGRRALGLPSPLELAAPSLVPNASA 75
+T PA++ G+ PG LP + L + A+GL +E AA L +
Sbjct: 392 KTEPPALIQAPWGVHPGQ-----HLPLQLIDLALQQILEAVGLAGGIE-AAVLLRGARAG 445
Query: 76 SPRPVSCRRAPPRPVPGAARWRGRPEPRPGSPAGPAPTRARPLGAPGRSAPPARRREREL 135
P+ R P GA GR RPG AG + R G PAR R R
Sbjct: 446 ETTPLGEARGPCWKARGAVP-SGRLRGRPGRVAGASGRRGASQARGGTGRAPARLR-RGR 503
Query: 136 GTDARVGDG--------ERELRPDARGRAE 157
G RVG+G E E P+ R RA+
Sbjct: 504 GMPGRVGNGVGEGRGASEPEGEPEPRARAD 533
>gi|239745974 PREDICTED: hypothetical protein XP_002343630 [Homo
sapiens]
Length = 538
Score = 48.5 bits (114), Expect = 3e-06
Identities = 51/159 (32%), Positives = 59/159 (37%), Gaps = 27/159 (16%)
Query: 27 AGLGPGPSPRRGRLPSGGLRLRARPGRRALGLPSPLELAAPSLVPNASASPRPVSCRRAP 86
A L P RG P G R R R + L AP P AS + P RAP
Sbjct: 384 ADLADRAFPVRGAGPIAGRRRR-----RGWTFAAALRKGAPREQPPASPAASPCQAPRAP 438
Query: 87 PRPVPGAARWRGR-----PEPRPGSPA-------GPAPTRARPLGAPGR----SAPPARR 130
+ A R RGR P P P +P P P R+R LG P + +P R
Sbjct: 439 EKETE-APRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGLGVPSQQGPTGSPGCRD 497
Query: 131 RERELGTDARVGDGERELR-----PDARGRAEAVCSDHV 164
R A G E LR P RA AVC H+
Sbjct: 498 RASAPRAGAEAGSMETFLRNGGLYPPPSPRAPAVCVQHL 536
Score = 36.2 bits (82), Expect = 0.015
Identities = 37/100 (37%), Positives = 39/100 (39%), Gaps = 8/100 (8%)
Query: 13 RLRVSARTVRPAMLAGLGPGPSPRRGRLPSGGLRLRARPGRRALGLPSPLELAAPSLVPN 72
RLR AR A A G S RR R + L +R RR GL S A P L P
Sbjct: 172 RLRCGAR----AFYAAAGGASSRRRQRGRNPALIVRGPGPRRGGGLTS----APPGLPPL 223
Query: 73 ASASPRPVSCRRAPPRPVPGAARWRGRPEPRPGSPAGPAP 112
AS P R PP P PG A R G G P
Sbjct: 224 ASPPPFWELPRPPPPPPPPGPALLPRRLRELRGKEVGLRP 263
>gi|239747236 PREDICTED: leucine rich repeat containing 38 [Homo
sapiens]
Length = 408
Score = 47.4 bits (111), Expect = 7e-06
Identities = 42/128 (32%), Positives = 51/128 (39%), Gaps = 13/128 (10%)
Query: 33 PSPRRGRLPSGGLRLRARPGRRALGLPSPLELAAPSLVPNASASPRPVSCRRAPPRPVPG 92
P P R PS L + PG + S +PS P + A RP + P RP+
Sbjct: 24 PVPSRQAAPSKRLESVSFPGAHEMSSRSLARPVSPS-APRSIAPARPGARPPRPGRPLAP 82
Query: 93 AARWR--GRPEPRPGSPAGPAPTRARPLGAPGRSAPPARRRERELGTDARVGDGERELRP 150
AR R PR GS P P+R G PG + P R R G R L+P
Sbjct: 83 RARQPVPHRAVPRQGSLREPLPSRRGRRGPPGHAPPSPSLRRR----------GARALQP 132
Query: 151 DARGRAEA 158
A RA A
Sbjct: 133 SAAARARA 140
>gi|239741057 PREDICTED: leucine rich repeat containing 38 [Homo
sapiens]
Length = 408
Score = 47.4 bits (111), Expect = 7e-06
Identities = 42/128 (32%), Positives = 51/128 (39%), Gaps = 13/128 (10%)
Query: 33 PSPRRGRLPSGGLRLRARPGRRALGLPSPLELAAPSLVPNASASPRPVSCRRAPPRPVPG 92
P P R PS L + PG + S +PS P + A RP + P RP+
Sbjct: 24 PVPSRQAAPSKRLESVSFPGAHEMSSRSLARPVSPS-APRSIAPARPGARPPRPGRPLAP 82
Query: 93 AARWR--GRPEPRPGSPAGPAPTRARPLGAPGRSAPPARRRERELGTDARVGDGERELRP 150
AR R PR GS P P+R G PG + P R R G R L+P
Sbjct: 83 RARQPVPHRAVPRQGSLREPLPSRRGRRGPPGHAPPSPSLRRR----------GARALQP 132
Query: 151 DARGRAEA 158
A RA A
Sbjct: 133 SAAARARA 140
>gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 47.0 bits (110), Expect = 9e-06
Identities = 44/112 (39%), Positives = 50/112 (44%), Gaps = 16/112 (14%)
Query: 29 LGPGPSPRRGRLPSGGLRLRARPGRRALGLPSPLELAAPSLVPNASASPRPVSCRRAPPR 88
LG GP PR P G R PG RA L AA L A+ P P RRAP R
Sbjct: 163 LGKGPPPRPA--PPG---TRCCPGARAAQLLREAAAAAQGLRAPAARLPEPT--RRAPGR 215
Query: 89 P--VPGAAR------WRGRPEPRPGSPAGPAPTRARPLGAPGRSAPPARRRE 132
P +P AA WR R P P + +P R RP P R+ PA+R E
Sbjct: 216 PGCLPTAAAAAADALWRSRRAPLPPTEF-LSPRRTRPRKHPERTRRPAQRLE 266
>gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 47.0 bits (110), Expect = 9e-06
Identities = 44/112 (39%), Positives = 50/112 (44%), Gaps = 16/112 (14%)
Query: 29 LGPGPSPRRGRLPSGGLRLRARPGRRALGLPSPLELAAPSLVPNASASPRPVSCRRAPPR 88
LG GP PR P G R PG RA L AA L A+ P P RRAP R
Sbjct: 163 LGKGPPPRPA--PPG---TRCCPGARAAQLLREAAAAAQGLRAPAARLPEPT--RRAPGR 215
Query: 89 P--VPGAAR------WRGRPEPRPGSPAGPAPTRARPLGAPGRSAPPARRRE 132
P +P AA WR R P P + +P R RP P R+ PA+R E
Sbjct: 216 PGCLPTAAAAAADALWRSRRAPLPPTEF-LSPRRTRPRKHPERTRRPAQRLE 266
>gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 47.0 bits (110), Expect = 9e-06
Identities = 44/112 (39%), Positives = 50/112 (44%), Gaps = 16/112 (14%)
Query: 29 LGPGPSPRRGRLPSGGLRLRARPGRRALGLPSPLELAAPSLVPNASASPRPVSCRRAPPR 88
LG GP PR P G R PG RA L AA L A+ P P RRAP R
Sbjct: 163 LGKGPPPRPA--PPG---TRCCPGARAAQLLREAAAAAQGLRAPAARLPEPT--RRAPGR 215
Query: 89 P--VPGAAR------WRGRPEPRPGSPAGPAPTRARPLGAPGRSAPPARRRE 132
P +P AA WR R P P + +P R RP P R+ PA+R E
Sbjct: 216 PGCLPTAAAAAADALWRSRRAPLPPTEF-LSPRRTRPRKHPERTRRPAQRLE 266
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 46.6 bits (109), Expect = 1e-05
Identities = 43/118 (36%), Positives = 45/118 (38%), Gaps = 17/118 (14%)
Query: 23 PAMLAGLGPGPSPRR--GRLPSGGLRLRARPGRRALGLPSPLELAAPSLVPNASASPRPV 80
PA AG GP G P RARPG P P P LVP A P P
Sbjct: 67 PAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRP-LVP---AGPAPP 122
Query: 81 SCRRAPP--------RPVPGAARWRGRPEPRPG---SPAGPAPTRARPLGAPGRSAPP 127
+ + PP PVP AA PEP P PAGPA AR PG P
Sbjct: 123 AAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGP 180
Score = 43.1 bits (100), Expect = 1e-04
Identities = 53/192 (27%), Positives = 64/192 (33%), Gaps = 54/192 (28%)
Query: 18 ARTVRPAMLAG-LGPGPSPRRGRLPSGGLRLRARPGRRA--------------------- 55
A+ PA LA GPGP P G P G A PG
Sbjct: 158 AKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSL 217
Query: 56 --------LGLPSPLELAAPSLV-----------------PNASASPRPVSCRRAPPRPV 90
L LP P AAP V P+ A+P P + APP P
Sbjct: 218 VNNGPAALLPLPKP---AAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPP 274
Query: 91 PGAA---RWRGRPE-PRPGSPAGPAPTRARPLGAPGRSAPPARRRERELGTDARVGDGER 146
P A R G P P +PA P P A+ G+ G + PA G + G G
Sbjct: 275 PAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAA 334
Query: 147 ELRPDARGRAEA 158
P +AE+
Sbjct: 335 AAAPAPGVKAES 346
Score = 30.0 bits (66), Expect = 1.1
Identities = 19/49 (38%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 85 APPRPVPGAARW---RGRPEPRPGSPAGPAPTRARPLGAPGRSAPPARR 130
AP PGAA GR P G P P P R P APPA +
Sbjct: 77 APAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAK 125
Score = 30.0 bits (66), Expect = 1.1
Identities = 36/110 (32%), Positives = 45/110 (40%), Gaps = 19/110 (17%)
Query: 23 PAMLAGLGPGPSPRRGRLPSGGLRLRARPGRRALGLPSPLELAAPSLVPNASASPRPVSC 82
PA A P P P L ARP G P+ AAP++ P A+A
Sbjct: 263 PAAPAAAPPPPPPAPATL--------ARPPGHPAGPPT----AAPAVPPPAAAQNG--GS 308
Query: 83 RRAPPRPVP---GAARWRGRPEPRPGSPAGPAP-TRARPLGAPGRSAPPA 128
A P P P G A G+P P + A PAP +A ++APPA
Sbjct: 309 AGAAPAPAPAAGGPAGVSGQPGP-GAAAAAPAPGVKAESPKRVVQAAPPA 357
>gi|58761548 tau tubulin kinase 1 [Homo sapiens]
Length = 1321
Score = 45.1 bits (105), Expect = 3e-05
Identities = 44/129 (34%), Positives = 52/129 (40%), Gaps = 21/129 (16%)
Query: 24 AMLAGLGPGPSPRRGRLPSGGLRLRARPGRRALGLPSPLELAAPSLVPNASASPRPVS-C 82
A A L P P RG P RA+ G R SP A+ S NASASPR S
Sbjct: 1201 ATAADLRPKQPPGRGLGPG-----RAQAGARPPAPRSPRLPASTSAARNASASPRSQSLS 1255
Query: 83 RRAPPRPVPGAARWRGRPEPRPG--SPAGPAPTRARPLGAP----GRSAPPARRRERELG 136
RR P P + RPG P G P RA+P G P + P + + +
Sbjct: 1256 RRESPSP---------SHQARPGVPPPRGVPPARAQPDGTPSPGGSKKGPRGKLQAQRAT 1306
Query: 137 TDARVGDGE 145
T R G E
Sbjct: 1307 TKGRAGGAE 1315
Score = 35.0 bits (79), Expect = 0.034
Identities = 43/137 (31%), Positives = 58/137 (42%), Gaps = 13/137 (9%)
Query: 37 RGRLPSG-GLRL-----RARPGRRALGLPSPLELAAPSLV----PNASASPRPVSCRRAP 86
R R+P GLR+ +P R+ G L+ A S + P SA+ + ++ P
Sbjct: 1153 RSRIPRPIGLRMPMPVAAQQPASRSHGAAPALDTAITSRLQLQTPPGSATAADLRPKQPP 1212
Query: 87 PRPV-PGAARWRGRPEPRPGSPAGPAPT-RARPLGAPGRSAPPARRRERELGTDARVGDG 144
R + PG A+ RP P P SP PA T AR A RS +RR AR G
Sbjct: 1213 GRGLGPGRAQAGARP-PAPRSPRLPASTSAARNASASPRSQSLSRRESPSPSHQARPGVP 1271
Query: 145 ERELRPDARGRAEAVCS 161
P AR + + S
Sbjct: 1272 PPRGVPPARAQPDGTPS 1288
>gi|19263349 Cbp/p300-interacting transactivator, with Glu/Asp-rich
carboxy-terminal domain, 4 [Homo sapiens]
Length = 184
Score = 45.1 bits (105), Expect = 3e-05
Identities = 55/179 (30%), Positives = 67/179 (37%), Gaps = 28/179 (15%)
Query: 19 RTVRPAMLAGLGPGPSPRRGRLPSGGLRLRA--RPGRRALGLPSPLE---LAAPSLVPNA 73
R V+ A GP R P G L + RP LG P P + LA + P +
Sbjct: 12 RLVQRPPSAAAAHGPHALRTLPPYAGPGLDSGLRPRGAPLGPPPPRQPGALAYGAFGPPS 71
Query: 74 SASPRPVSCRRAPPRPVPGAARWRGRPEPRPGSPAGPAPTRARPLG---APGRSAPPARR 130
S P P A P P G A + P PG A P P G AP +APP
Sbjct: 72 SFQPFP-----AVPPPAAGIAHLQPVATPYPGRAAAPPNAPGGPPGPQPAPSAAAPPPPA 126
Query: 131 RERELGTDARVGDGE--------------RELRPDARGRAEAVCSDHVGAGCATGSVSC 175
G DA + D E REL G++E C +G+ GSVSC
Sbjct: 127 HALG-GMDAELIDEEALTSLELELGLHRVRELPELFLGQSEFDCFSDLGSAPPAGSVSC 184
>gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo
sapiens]
Length = 870
Score = 44.7 bits (104), Expect = 4e-05
Identities = 54/169 (31%), Positives = 67/169 (39%), Gaps = 35/169 (20%)
Query: 15 RVSARTVRPAM----LAGLGPGPSPRRGRLPSGGLRLRARP----GRRALGLPSPLELAA 66
RV+ R RPA + GL PSP R + P + + G+ +
Sbjct: 630 RVARREARPARARGEIGGLSLSPSPERRKPPPPDPATKPKVSWIHGKHSAAAAGRAPSPP 689
Query: 67 PSLVPNASASPRPVSCRRAPPRPVP-----GAARWRGRPEPRP-GSP------AGPAPTR 114
P P + A+P P +R P G+ R R P PRP G P A P+P R
Sbjct: 690 P---PGSEAAPSPSKRKRTPSDKSAHTVEHGSPRTRD-PTPRPPGLPEEATALAAPSPPR 745
Query: 115 AR------PLGAPGRSAPPARRRERELGTDARVGDGERELRPDARGRAE 157
AR PLGA GR PA+R E A V R L GRAE
Sbjct: 746 ARARAAPRPLGAHGRRRSPAKRAEAASMLAADVRGKTRSL-----GRAE 789
>gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo
sapiens]
Length = 865
Score = 44.7 bits (104), Expect = 4e-05
Identities = 54/169 (31%), Positives = 67/169 (39%), Gaps = 35/169 (20%)
Query: 15 RVSARTVRPAM----LAGLGPGPSPRRGRLPSGGLRLRARP----GRRALGLPSPLELAA 66
RV+ R RPA + GL PSP R + P + + G+ +
Sbjct: 625 RVARREARPARARGEIGGLSLSPSPERRKPPPPDPATKPKVSWIHGKHSAAAAGRAPSPP 684
Query: 67 PSLVPNASASPRPVSCRRAPPRPVP-----GAARWRGRPEPRP-GSP------AGPAPTR 114
P P + A+P P +R P G+ R R P PRP G P A P+P R
Sbjct: 685 P---PGSEAAPSPSKRKRTPSDKSAHTVEHGSPRTRD-PTPRPPGLPEEATALAAPSPPR 740
Query: 115 AR------PLGAPGRSAPPARRRERELGTDARVGDGERELRPDARGRAE 157
AR PLGA GR PA+R E A V R L GRAE
Sbjct: 741 ARARAAPRPLGAHGRRRSPAKRAEAASMLAADVRGKTRSL-----GRAE 784
>gi|150378545 POM121 membrane glycoprotein (rat)-like [Homo sapiens]
Length = 987
Score = 44.7 bits (104), Expect = 4e-05
Identities = 37/117 (31%), Positives = 51/117 (43%), Gaps = 13/117 (11%)
Query: 23 PAMLAGLGPGPSPRRGRLPSGGLRLRARPGRRALGL-PSPLELAA------PSLVPNASA 75
P++L LG S G LPS ++P LGL P+P + A P+L +
Sbjct: 366 PSLLPPLGLSQSGPPGLLPSPSFD--SKPPTTLLGLIPAPSMVPATDTKAPPTLQAETAT 423
Query: 76 SPRPVSCRRAPPRPVPGAARWRGRPEPRPGSPAGPAPTRARPLGAPGRSAPPARRRE 132
P+ S P P P + G P SPA PA + A P+ P +APP +E
Sbjct: 424 KPQATSA----PSPAPKQSFLFGTQNTSPSSPAAPAASSASPMFKPIFTAPPKSEKE 476
>gi|237757310 synaptojanin 1 isoform a [Homo sapiens]
Length = 1612
Score = 44.3 bits (103), Expect = 6e-05
Identities = 48/155 (30%), Positives = 66/155 (42%), Gaps = 26/155 (16%)
Query: 21 VRPAMLAGLGPGPS--PR----------RGRLPSGGLRLRARPGRRALGLPS----PLEL 64
++P+ +GLG PS PR G +PS +R P R G PS P++
Sbjct: 1069 LQPSSSSGLGTSPSSSPRTSPCQSPTISEGPVPSLPIRPSRAPSRTP-GPPSAQSSPIDA 1127
Query: 65 AAPSLVPNASASPRPVSCRRAPPRPVPGAARWRGRPEPRPGSPAG---PAPTRARPLGAP 121
+ +P + +P+ +R PP P P A R P RP P+G PAPTR G
Sbjct: 1128 QPATPLPQKDPA-QPLEPKRPPP-PRPVAPPTRPAPPQRPPPPSGARSPAPTRKEFGGIG 1185
Query: 122 GRSAPPARRREREL----GTDARVGDGERELRPDA 152
+P RRE E GT + G + P A
Sbjct: 1186 APPSPGVARREMEAPKSPGTTRKDNIGRSQPSPQA 1220
>gi|237757308 synaptojanin 1 isoform b [Homo sapiens]
Length = 1350
Score = 44.3 bits (103), Expect = 6e-05
Identities = 48/155 (30%), Positives = 66/155 (42%), Gaps = 26/155 (16%)
Query: 21 VRPAMLAGLGPGPS--PR----------RGRLPSGGLRLRARPGRRALGLPS----PLEL 64
++P+ +GLG PS PR G +PS +R P R G PS P++
Sbjct: 1069 LQPSSSSGLGTSPSSSPRTSPCQSPTISEGPVPSLPIRPSRAPSRTP-GPPSAQSSPIDA 1127
Query: 65 AAPSLVPNASASPRPVSCRRAPPRPVPGAARWRGRPEPRPGSPAG---PAPTRARPLGAP 121
+ +P + +P+ +R PP P P A R P RP P+G PAPTR G
Sbjct: 1128 QPATPLPQKDPA-QPLEPKRPPP-PRPVAPPTRPAPPQRPPPPSGARSPAPTRKEFGGIG 1185
Query: 122 GRSAPPARRREREL----GTDARVGDGERELRPDA 152
+P RRE E GT + G + P A
Sbjct: 1186 APPSPGVARREMEAPKSPGTTRKDNIGRSQPSPQA 1220
>gi|26051278 nuclear pore membrane protein 121 [Homo sapiens]
Length = 984
Score = 44.3 bits (103), Expect = 6e-05
Identities = 37/117 (31%), Positives = 51/117 (43%), Gaps = 13/117 (11%)
Query: 23 PAMLAGLGPGPSPRRGRLPSGGLRLRARPGRRALGL-PSPLELAA------PSLVPNASA 75
P++L LG S G LPS ++P LGL P+P + A P+L +
Sbjct: 366 PSLLPPLGLSQSGPPGLLPSPSFD--SKPPTTLLGLIPAPSMVPATDTKAPPTLQAETAT 423
Query: 76 SPRPVSCRRAPPRPVPGAARWRGRPEPRPGSPAGPAPTRARPLGAPGRSAPPARRRE 132
P+ S P P P + G P SPA PA + A P+ P +APP +E
Sbjct: 424 KPQATSA----PSPAPKQSFLFGTQNTSPSSPAAPAASSAPPMFKPIFTAPPKSEKE 476
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 44.3 bits (103), Expect = 6e-05
Identities = 33/93 (35%), Positives = 39/93 (41%), Gaps = 13/93 (13%)
Query: 48 RARPGRRALGLPSPLELAAPSLVPNASASPRPVSCRRAPPRPVPGAARWR---------- 97
R +P RR P+P + A+A+P P PP PV AA R
Sbjct: 98 RVQPPRRGATPPAPPRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAAT 157
Query: 98 GRPEPRPGSPAGPAPTRARPLGA--PGRSAPPA 128
P P P P GP RA PL A P +APPA
Sbjct: 158 APPSPGPAQP-GPRAQRAAPLAAPPPAPAAPPA 189
Score = 41.6 bits (96), Expect = 4e-04
Identities = 50/161 (31%), Positives = 60/161 (37%), Gaps = 35/161 (21%)
Query: 23 PAMLAGLGPGPSPRRGRL-----PSGGLRLRARPGRRA-----LGLPSPLELAAPSLVPN 72
PA +A P +PR PS G A+PG RA L P P A P++ P
Sbjct: 137 PAPVAAAAPARAPRAAAAAATAPPSPG---PAQPGPRAQRAAPLAAPPPAPAAPPAVAPP 193
Query: 73 AS--ASPRPVSCRRAPPRP----VPGAARWRGRPEPRPGSPAGPAPTRARPLGAPGRSAP 126
A +P P R PP P P + + P P+P P RA G +A
Sbjct: 194 AGPRRAPPPAVAAREPPLPPPPQPPAPPQQQQPPPPQPQPPPEGGAVRA------GGAAR 247
Query: 127 PARRRE--RELGTDARVG--------DGERELRPDARGRAE 157
P RE R LG G G E ARGR E
Sbjct: 248 PVSLREVVRYLGGSGGAGGRLTRGRVQGLLEEEAAARGRLE 288
>gi|119395760 diaphanous 1 isoform 2 [Homo sapiens]
Length = 1263
Score = 43.9 bits (102), Expect = 7e-05
Identities = 37/108 (34%), Positives = 45/108 (41%), Gaps = 13/108 (12%)
Query: 31 PGPSPRRGRLPSGGLRLRARP---GRRALGLPSPLE----LAAPSLVPNASASPRPVSCR 83
P P P LP GG+ + + P G A+ P PL + P +P P P S
Sbjct: 603 PPPPPPPPPLP-GGVCISSPPSLPGGTAISPPPPLSGDATIPPPPPLPEGVGIPSPSSLP 661
Query: 84 RA----PPRPVPGAARWRGRPEPRPGSPAGPAPTRARPLGAPGRSAPP 127
PP P+PG+AR P P PGS P P P G G PP
Sbjct: 662 GGTAIPPPPPLPGSARIPPPPPPLPGSAGIPPPPPPLP-GEAGMPPPP 708
Score = 39.7 bits (91), Expect = 0.001
Identities = 33/102 (32%), Positives = 41/102 (40%), Gaps = 18/102 (17%)
Query: 31 PGPSPRRGRLPSGGLRLRARPGRRALGLPSPLELAA-----PSLVPNASASPRPVSCRRA 85
P P P +PS + PG A+ P PL +A P +P ++ P
Sbjct: 645 PPPLPEGVGIPSPS----SLPGGTAIPPPPPLPGSARIPPPPPPLPGSAGIP-------P 693
Query: 86 PPRPVPGAARWRGRPEPRPGSPAGPAPTRARPLGAPGRSAPP 127
PP P+PG A P P PG P P P G PG PP
Sbjct: 694 PPPPLPGEAGMPPPPPPLPGGPGIPPPPPFP--GGPGIPPPP 733
Score = 28.1 bits (61), Expect = 4.2
Identities = 18/61 (29%), Positives = 21/61 (34%), Gaps = 4/61 (6%)
Query: 67 PSLVPNASASPRPVSCRRAPPRPVPGAARWRGRPEPRPGSPAGPAPTRARPLGAPGRSAP 126
P P S +P P PP P+PG P G+ P P PL P
Sbjct: 589 PPPAPGDSTTPPPPPPPPPPPPPLPGGVCISSPPSLPGGTAISPPP----PLSGDATIPP 644
Query: 127 P 127
P
Sbjct: 645 P 645
Score = 27.3 bits (59), Expect = 7.1
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 10/70 (14%)
Query: 65 AAPSLVPNASASPRPVSCRRAPPRPVPGAARWRGRPEPRPG---SPAGPAPTRARPLGAP 121
AA VP + S PV P P+PG + P P PG +P P P P P
Sbjct: 558 AAAITVPPSVPSRAPVP----PAPPLPGDSGTIIPPPPAPGDSTTPPPPPPPPPPPPPLP 613
Query: 122 GR---SAPPA 128
G S+PP+
Sbjct: 614 GGVCISSPPS 623
>gi|119395758 diaphanous 1 isoform 1 [Homo sapiens]
Length = 1272
Score = 43.9 bits (102), Expect = 7e-05
Identities = 37/108 (34%), Positives = 45/108 (41%), Gaps = 13/108 (12%)
Query: 31 PGPSPRRGRLPSGGLRLRARP---GRRALGLPSPLE----LAAPSLVPNASASPRPVSCR 83
P P P LP GG+ + + P G A+ P PL + P +P P P S
Sbjct: 612 PPPPPPPPPLP-GGVCISSPPSLPGGTAISPPPPLSGDATIPPPPPLPEGVGIPSPSSLP 670
Query: 84 RA----PPRPVPGAARWRGRPEPRPGSPAGPAPTRARPLGAPGRSAPP 127
PP P+PG+AR P P PGS P P P G G PP
Sbjct: 671 GGTAIPPPPPLPGSARIPPPPPPLPGSAGIPPPPPPLP-GEAGMPPPP 717
Score = 39.7 bits (91), Expect = 0.001
Identities = 33/102 (32%), Positives = 41/102 (40%), Gaps = 18/102 (17%)
Query: 31 PGPSPRRGRLPSGGLRLRARPGRRALGLPSPLELAA-----PSLVPNASASPRPVSCRRA 85
P P P +PS + PG A+ P PL +A P +P ++ P
Sbjct: 654 PPPLPEGVGIPSPS----SLPGGTAIPPPPPLPGSARIPPPPPPLPGSAGIP-------P 702
Query: 86 PPRPVPGAARWRGRPEPRPGSPAGPAPTRARPLGAPGRSAPP 127
PP P+PG A P P PG P P P G PG PP
Sbjct: 703 PPPPLPGEAGMPPPPPPLPGGPGIPPPPPFP--GGPGIPPPP 742
Score = 28.1 bits (61), Expect = 4.2
Identities = 18/61 (29%), Positives = 21/61 (34%), Gaps = 4/61 (6%)
Query: 67 PSLVPNASASPRPVSCRRAPPRPVPGAARWRGRPEPRPGSPAGPAPTRARPLGAPGRSAP 126
P P S +P P PP P+PG P G+ P P PL P
Sbjct: 598 PPPAPGDSTTPPPPPPPPPPPPPLPGGVCISSPPSLPGGTAISPPP----PLSGDATIPP 653
Query: 127 P 127
P
Sbjct: 654 P 654
Score = 27.3 bits (59), Expect = 7.1
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 10/70 (14%)
Query: 65 AAPSLVPNASASPRPVSCRRAPPRPVPGAARWRGRPEPRPG---SPAGPAPTRARPLGAP 121
AA VP + S PV P P+PG + P P PG +P P P P P
Sbjct: 567 AAAITVPPSVPSRAPVP----PAPPLPGDSGTIIPPPPAPGDSTTPPPPPPPPPPPPPLP 622
Query: 122 GR---SAPPA 128
G S+PP+
Sbjct: 623 GGVCISSPPS 632
>gi|239753975 PREDICTED: hypothetical protein [Homo sapiens]
Length = 389
Score = 43.5 bits (101), Expect = 1e-04
Identities = 34/97 (35%), Positives = 41/97 (42%), Gaps = 22/97 (22%)
Query: 54 RALGLP-SPLELAAPSLVPNASASPRPVSCRRAPPRPVPG-----------------AAR 95
R L LP SP + AAP P+A P P + + P P PG A
Sbjct: 97 RELTLPVSPADPAAPPSSPHAPTRPPPQAVQPRPSEPTPGSEALPPGSLPEGEPRPYALP 156
Query: 96 WRGRPEPRP---GSPAGPAPTRARPLGAPGRSAPPAR 129
R P PRP G P PAP R +P P + PP+R
Sbjct: 157 PRESPAPRPFRWGDPFSPAPPRPQPPSRPA-AQPPSR 192
>gi|21359951 RNA binding motif protein 42 [Homo sapiens]
Length = 480
Score = 43.5 bits (101), Expect = 1e-04
Identities = 58/188 (30%), Positives = 74/188 (39%), Gaps = 34/188 (18%)
Query: 7 LMSSLARLRVSARTVRPAMLAG------LGPGPSPRRGRLPSGGLRLRARPGRRALGLPS 60
+ +L +A TV P M+ G +G GP R L S R A RRA P
Sbjct: 95 VQQTLEARAAAAATVVPPMVGGPPFVGPVGFGPGDR-SHLDSPEAR-EAMFLRRAAVAPQ 152
Query: 61 PLELAAPSLVPN-----------ASASPRPVSCRRAPPRPVPGAARWRGRPEPRPGSPAG 109
+ P+ VP+ A+A PRP++ R PP G P P P P
Sbjct: 153 RAPILRPAFVPHVLQRADSALSSAAAGPRPMALR--PPHQA-----LVGPPLPGPPGPPM 205
Query: 110 PAPTRAR----PLGAPGRSAP----PARRRERELGTDARVGDGERELRPDARGRAEAVCS 161
P AR PLG+ P PA RE LG + + E + A G EA +
Sbjct: 206 MLPPMARAPGPPLGSMAALRPPLEEPAAPRELGLGLGLGLKEKEEAVVAAAAGLEEASAA 265
Query: 162 DHVGAGCA 169
VGAG A
Sbjct: 266 VAVGAGGA 273
Score = 31.6 bits (70), Expect = 0.38
Identities = 27/83 (32%), Positives = 31/83 (37%), Gaps = 2/83 (2%)
Query: 49 ARPGRRALGLPSPLELAAPSLVPNASASPRPVSCRRAPPRPVPGAARWRGRPE-PRPGSP 107
A G +G PL LA P P P V PP +P R RP PRP P
Sbjct: 273 APAGPAVIGPSLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRPPRPEPP 332
Query: 108 AG-PAPTRARPLGAPGRSAPPAR 129
G A PLG + P +
Sbjct: 333 PGLMALEVPEPLGEDKKKGKPEK 355
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 43.1 bits (100), Expect = 1e-04
Identities = 44/147 (29%), Positives = 56/147 (38%), Gaps = 26/147 (17%)
Query: 28 GLGPGPSPRRGRLPSG--GLRLR---------ARPGRRALGLPSP------LELAAPSLV 70
G GPGP+P P G G + PG+ G P P AAP+
Sbjct: 239 GPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTST 298
Query: 71 PNASASPRPVSCRRAPPRPVPGAARWRGRPEPR-PGSPAGPAP--------TRARPLGAP 121
P P+P P VP AA P+ + PG PA PAP +R P+ P
Sbjct: 299 PQKLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKP 358
Query: 122 GRSAPPARRRERELGTDARVGDGEREL 148
P +ERE AR+ +EL
Sbjct: 359 RGLDPVEILQEREYRLQARIAHRIQEL 385
Score = 32.7 bits (73), Expect = 0.17
Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 56 LGLPSPLELAAPSLVPNASASPRPVSCRRAPPRPVPGAARWRGRPEPRPGSPAGPAPTRA 115
+ P P P P+ P P + P P PG+A P P P S P PT+
Sbjct: 1 MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQG 60
Query: 116 RPLGAP 121
P G P
Sbjct: 61 -PGGYP 65
Score = 32.0 bits (71), Expect = 0.29
Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 9/77 (11%)
Query: 54 RALGLPSPLELAAPSLVPNASASPRPVSCRRAPPRPVPGAARWRGRPEPRPGSPAGPA-- 111
R LP L++A P P ++ P P P + P P PG GP
Sbjct: 192 RGQPLPDHLQMAVQG------KRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPA 245
Query: 112 -PTRARPLGAPGRSAPP 127
P +RP G G + PP
Sbjct: 246 PPNYSRPHGMGGPNMPP 262
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 43.1 bits (100), Expect = 1e-04
Identities = 44/147 (29%), Positives = 56/147 (38%), Gaps = 26/147 (17%)
Query: 28 GLGPGPSPRRGRLPSG--GLRLR---------ARPGRRALGLPSP------LELAAPSLV 70
G GPGP+P P G G + PG+ G P P AAP+
Sbjct: 239 GPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTST 298
Query: 71 PNASASPRPVSCRRAPPRPVPGAARWRGRPEPR-PGSPAGPAP--------TRARPLGAP 121
P P+P P VP AA P+ + PG PA PAP +R P+ P
Sbjct: 299 PQKLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKP 358
Query: 122 GRSAPPARRRERELGTDARVGDGEREL 148
P +ERE AR+ +EL
Sbjct: 359 RGLDPVEILQEREYRLQARIAHRIQEL 385
Score = 32.7 bits (73), Expect = 0.17
Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 56 LGLPSPLELAAPSLVPNASASPRPVSCRRAPPRPVPGAARWRGRPEPRPGSPAGPAPTRA 115
+ P P P P+ P P + P P PG+A P P P S P PT+
Sbjct: 1 MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQG 60
Query: 116 RPLGAP 121
P G P
Sbjct: 61 -PGGYP 65
Score = 32.0 bits (71), Expect = 0.29
Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 9/77 (11%)
Query: 54 RALGLPSPLELAAPSLVPNASASPRPVSCRRAPPRPVPGAARWRGRPEPRPGSPAGPA-- 111
R LP L++A P P ++ P P P + P P PG GP
Sbjct: 192 RGQPLPDHLQMAVQG------KRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPA 245
Query: 112 -PTRARPLGAPGRSAPP 127
P +RP G G + PP
Sbjct: 246 PPNYSRPHGMGGPNMPP 262
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 43.1 bits (100), Expect = 1e-04
Identities = 44/147 (29%), Positives = 56/147 (38%), Gaps = 26/147 (17%)
Query: 28 GLGPGPSPRRGRLPSG--GLRLR---------ARPGRRALGLPSP------LELAAPSLV 70
G GPGP+P P G G + PG+ G P P AAP+
Sbjct: 239 GPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTST 298
Query: 71 PNASASPRPVSCRRAPPRPVPGAARWRGRPEPR-PGSPAGPAP--------TRARPLGAP 121
P P+P P VP AA P+ + PG PA PAP +R P+ P
Sbjct: 299 PQKLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKP 358
Query: 122 GRSAPPARRRERELGTDARVGDGEREL 148
P +ERE AR+ +EL
Sbjct: 359 RGLDPVEILQEREYRLQARIAHRIQEL 385
Score = 32.7 bits (73), Expect = 0.17
Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 56 LGLPSPLELAAPSLVPNASASPRPVSCRRAPPRPVPGAARWRGRPEPRPGSPAGPAPTRA 115
+ P P P P+ P P + P P PG+A P P P S P PT+
Sbjct: 1 MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQG 60
Query: 116 RPLGAP 121
P G P
Sbjct: 61 -PGGYP 65
Score = 32.0 bits (71), Expect = 0.29
Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 9/77 (11%)
Query: 54 RALGLPSPLELAAPSLVPNASASPRPVSCRRAPPRPVPGAARWRGRPEPRPGSPAGPA-- 111
R LP L++A P P ++ P P P + P P PG GP
Sbjct: 192 RGQPLPDHLQMAVQG------KRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPA 245
Query: 112 -PTRARPLGAPGRSAPP 127
P +RP G G + PP
Sbjct: 246 PPNYSRPHGMGGPNMPP 262
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 43.1 bits (100), Expect = 1e-04
Identities = 44/147 (29%), Positives = 56/147 (38%), Gaps = 26/147 (17%)
Query: 28 GLGPGPSPRRGRLPSG--GLRLR---------ARPGRRALGLPSP------LELAAPSLV 70
G GPGP+P P G G + PG+ G P P AAP+
Sbjct: 239 GPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTST 298
Query: 71 PNASASPRPVSCRRAPPRPVPGAARWRGRPEPR-PGSPAGPAP--------TRARPLGAP 121
P P+P P VP AA P+ + PG PA PAP +R P+ P
Sbjct: 299 PQKLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKP 358
Query: 122 GRSAPPARRRERELGTDARVGDGEREL 148
P +ERE AR+ +EL
Sbjct: 359 RGLDPVEILQEREYRLQARIAHRIQEL 385
Score = 32.7 bits (73), Expect = 0.17
Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 56 LGLPSPLELAAPSLVPNASASPRPVSCRRAPPRPVPGAARWRGRPEPRPGSPAGPAPTRA 115
+ P P P P+ P P + P P PG+A P P P S P PT+
Sbjct: 1 MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQG 60
Query: 116 RPLGAP 121
P G P
Sbjct: 61 -PGGYP 65
Score = 32.0 bits (71), Expect = 0.29
Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 9/77 (11%)
Query: 54 RALGLPSPLELAAPSLVPNASASPRPVSCRRAPPRPVPGAARWRGRPEPRPGSPAGPA-- 111
R LP L++A P P ++ P P P + P P PG GP
Sbjct: 192 RGQPLPDHLQMAVQG------KRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPA 245
Query: 112 -PTRARPLGAPGRSAPP 127
P +RP G G + PP
Sbjct: 246 PPNYSRPHGMGGPNMPP 262
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 43.1 bits (100), Expect = 1e-04
Identities = 44/147 (29%), Positives = 56/147 (38%), Gaps = 26/147 (17%)
Query: 28 GLGPGPSPRRGRLPSG--GLRLR---------ARPGRRALGLPSP------LELAAPSLV 70
G GPGP+P P G G + PG+ G P P AAP+
Sbjct: 239 GPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTST 298
Query: 71 PNASASPRPVSCRRAPPRPVPGAARWRGRPEPR-PGSPAGPAP--------TRARPLGAP 121
P P+P P VP AA P+ + PG PA PAP +R P+ P
Sbjct: 299 PQKLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKP 358
Query: 122 GRSAPPARRRERELGTDARVGDGEREL 148
P +ERE AR+ +EL
Sbjct: 359 RGLDPVEILQEREYRLQARIAHRIQEL 385
Score = 32.7 bits (73), Expect = 0.17
Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 56 LGLPSPLELAAPSLVPNASASPRPVSCRRAPPRPVPGAARWRGRPEPRPGSPAGPAPTRA 115
+ P P P P+ P P + P P PG+A P P P S P PT+
Sbjct: 1 MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQG 60
Query: 116 RPLGAP 121
P G P
Sbjct: 61 -PGGYP 65
Score = 32.0 bits (71), Expect = 0.29
Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 9/77 (11%)
Query: 54 RALGLPSPLELAAPSLVPNASASPRPVSCRRAPPRPVPGAARWRGRPEPRPGSPAGPA-- 111
R LP L++A P P ++ P P P + P P PG GP
Sbjct: 192 RGQPLPDHLQMAVQG------KRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPA 245
Query: 112 -PTRARPLGAPGRSAPP 127
P +RP G G + PP
Sbjct: 246 PPNYSRPHGMGGPNMPP 262
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,060,248
Number of Sequences: 37866
Number of extensions: 805933
Number of successful extensions: 11453
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 1545
Number of HSP's that attempted gapping in prelim test: 6494
Number of HSP's gapped (non-prelim): 4996
length of query: 177
length of database: 18,247,518
effective HSP length: 95
effective length of query: 82
effective length of database: 14,650,248
effective search space: 1201320336
effective search space used: 1201320336
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.