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Search of human proteins with 239756489
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756489 PREDICTED: hypothetical protein [Homo sapiens]
(77 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756489 PREDICTED: hypothetical protein [Homo sapiens] 162 7e-41
gi|239751105 PREDICTED: hypothetical protein XP_002347705 [Homo ... 139 6e-34
gi|239745592 PREDICTED: hypothetical protein XP_002344154 [Homo ... 139 6e-34
gi|239756617 PREDICTED: hypothetical protein [Homo sapiens] 125 6e-30
gi|239745465 PREDICTED: hypothetical protein XP_002343498 [Homo ... 105 1e-23
gi|42734375 ankyrin repeat and sterile alpha motif domain contai... 29 0.71
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 29 0.93
gi|112363080 microtubule associated serine/threonine kinase 2 [H... 28 1.6
gi|109637767 calpastatin isoform j [Homo sapiens] 28 2.1
gi|109637765 calpastatin isoform i [Homo sapiens] 28 2.1
gi|109637763 calpastatin isoform h [Homo sapiens] 28 2.1
gi|109637761 calpastatin isoform g [Homo sapiens] 28 2.1
gi|109637759 calpastatin isoform f [Homo sapiens] 28 2.1
gi|27765085 calpastatin isoform b [Homo sapiens] 28 2.1
gi|109637753 calpastatin isoform a [Homo sapiens] 28 2.1
gi|110624787 5'-3' exoribonuclease 1 isoform b [Homo sapiens] 28 2.1
gi|110624792 5'-3' exoribonuclease 1 isoform a [Homo sapiens] 28 2.1
gi|239757993 PREDICTED: similar to inward rectifying K+ channel ... 27 2.7
gi|239757991 PREDICTED: similar to inward rectifying K+ channel ... 27 2.7
gi|239751249 PREDICTED: hypothetical protein XP_002347768 [Homo ... 27 2.7
gi|14277685 protocadherin gamma subfamily C, 5 isoform 2 precurs... 27 2.7
gi|11128023 protocadherin gamma subfamily C, 5 isoform 1 precurs... 27 2.7
gi|122056685 peptidylarginine deiminase type I [Homo sapiens] 27 4.6
gi|125988395 jumonji domain containing 6 isoform 1 [Homo sapiens] 27 4.6
gi|125988389 jumonji domain containing 6 isoform 2 [Homo sapiens] 27 4.6
gi|52218864 olfactory receptor, family 13, subfamily C, member 8... 27 4.6
gi|75677612 leucine rich repeat containing 37, member A3 [Homo s... 27 4.6
gi|24497517 homeobox A5 [Homo sapiens] 26 6.0
gi|221316624 dystonin isoform 4 [Homo sapiens] 26 7.9
gi|221316622 dystonin isoform 3 [Homo sapiens] 26 7.9
>gi|239756489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 77
Score = 162 bits (409), Expect = 7e-41
Identities = 77/77 (100%), Positives = 77/77 (100%)
Query: 1 MIHQPRKLILVQCEKPDLTNSSQLTPSEAEDCSSSDFSCVRPDSQSEADAGTETISHREI 60
MIHQPRKLILVQCEKPDLTNSSQLTPSEAEDCSSSDFSCVRPDSQSEADAGTETISHREI
Sbjct: 1 MIHQPRKLILVQCEKPDLTNSSQLTPSEAEDCSSSDFSCVRPDSQSEADAGTETISHREI 60
Query: 61 LPEYGVINPAVHYCTLP 77
LPEYGVINPAVHYCTLP
Sbjct: 61 LPEYGVINPAVHYCTLP 77
>gi|239751105 PREDICTED: hypothetical protein XP_002347705 [Homo
sapiens]
Length = 138
Score = 139 bits (349), Expect = 6e-34
Identities = 65/72 (90%), Positives = 69/72 (95%)
Query: 6 RKLILVQCEKPDLTNSSQLTPSEAEDCSSSDFSCVRPDSQSEADAGTETISHREILPEYG 65
+ ++ V+CEKPDLTNSSQLTPSEAEDCSSSD SCVRPDSQSEADAGTETISHREILPEYG
Sbjct: 67 QSVLCVRCEKPDLTNSSQLTPSEAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYG 126
Query: 66 VINPAVHYCTLP 77
VINPAVHYCTLP
Sbjct: 127 VINPAVHYCTLP 138
>gi|239745592 PREDICTED: hypothetical protein XP_002344154 [Homo
sapiens]
Length = 138
Score = 139 bits (349), Expect = 6e-34
Identities = 65/72 (90%), Positives = 69/72 (95%)
Query: 6 RKLILVQCEKPDLTNSSQLTPSEAEDCSSSDFSCVRPDSQSEADAGTETISHREILPEYG 65
+ ++ V+CEKPDLTNSSQLTPSEAEDCSSSD SCVRPDSQSEADAGTETISHREILPEYG
Sbjct: 67 QSVLCVRCEKPDLTNSSQLTPSEAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYG 126
Query: 66 VINPAVHYCTLP 77
VINPAVHYCTLP
Sbjct: 127 VINPAVHYCTLP 138
>gi|239756617 PREDICTED: hypothetical protein [Homo sapiens]
Length = 63
Score = 125 bits (315), Expect = 6e-30
Identities = 60/61 (98%), Positives = 60/61 (98%)
Query: 17 DLTNSSQLTPSEAEDCSSSDFSCVRPDSQSEADAGTETISHREILPEYGVINPAVHYCTL 76
DLTNSSQLTPSEAEDCSSSD SCVRPDSQSEADAGTETISHREILPEYGVINPAVHYCTL
Sbjct: 3 DLTNSSQLTPSEAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYGVINPAVHYCTL 62
Query: 77 P 77
P
Sbjct: 63 P 63
>gi|239745465 PREDICTED: hypothetical protein XP_002343498 [Homo
sapiens]
Length = 58
Score = 105 bits (261), Expect = 1e-23
Identities = 49/50 (98%), Positives = 49/50 (98%)
Query: 28 EAEDCSSSDFSCVRPDSQSEADAGTETISHREILPEYGVINPAVHYCTLP 77
EAEDCSSSD SCVRPDSQSEADAGTETISHREILPEYGVINPAVHYCTLP
Sbjct: 9 EAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYGVINPAVHYCTLP 58
>gi|42734375 ankyrin repeat and sterile alpha motif domain
containing 3 [Homo sapiens]
Length = 656
Score = 29.3 bits (64), Expect = 0.71
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 10 LVQCEKPDLTNSSQLTPSEAEDCSSSDFSCVRPDSQ 45
L+ P L S +P + ED SSSD SC P Q
Sbjct: 220 LMDTYSPSLPKSLYRSPEKYEDLSSSDESCPAPQRQ 255
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 28.9 bits (63), Expect = 0.93
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 14 EKPDLTNSSQLTPSEAEDCSSSDFSCVRPDSQSEADAGT 52
E D + SQ E +D ++ R + QSEADAG+
Sbjct: 530 ESEDAQSQSQADEEEEDDDFGVEYLLARDEEQSEADAGS 568
>gi|112363080 microtubule associated serine/threonine kinase 2 [Homo
sapiens]
Length = 1798
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 19 TNSSQLTPSEAEDCSSSDFSCVRPDSQSEADAGTETISHREILPEYGVINPAV 71
T S L PSE CS S + P SQS + ++ R+ LP G + P +
Sbjct: 1054 TALSLLIPSEHHTCSPLA-SPMSPHSQSSNPSSRDSSPSRDFLPALGSMRPPI 1105
>gi|109637767 calpastatin isoform j [Homo sapiens]
Length = 667
Score = 27.7 bits (60), Expect = 2.1
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 16 PDLTNSSQLTPSEAEDCSSSDFSCVRPDS---QSEADAGTETI 55
P +S + P +A D SSDF+C P + ++E + TE +
Sbjct: 177 PPADSSKPIGPDDAIDALSSDFTCGSPTAAGKKTEKEESTEVL 219
>gi|109637765 calpastatin isoform i [Homo sapiens]
Length = 708
Score = 27.7 bits (60), Expect = 2.1
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 16 PDLTNSSQLTPSEAEDCSSSDFSCVRPDS---QSEADAGTETI 55
P +S + P +A D SSDF+C P + ++E + TE +
Sbjct: 218 PPADSSKPIGPDDAIDALSSDFTCGSPTAAGKKTEKEESTEVL 260
>gi|109637763 calpastatin isoform h [Homo sapiens]
Length = 769
Score = 27.7 bits (60), Expect = 2.1
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 16 PDLTNSSQLTPSEAEDCSSSDFSCVRPDS---QSEADAGTETI 55
P +S + P +A D SSDF+C P + ++E + TE +
Sbjct: 279 PPADSSKPIGPDDAIDALSSDFTCGSPTAAGKKTEKEESTEVL 321
>gi|109637761 calpastatin isoform g [Homo sapiens]
Length = 772
Score = 27.7 bits (60), Expect = 2.1
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 16 PDLTNSSQLTPSEAEDCSSSDFSCVRPDS---QSEADAGTETI 55
P +S + P +A D SSDF+C P + ++E + TE +
Sbjct: 282 PPADSSKPIGPDDAIDALSSDFTCGSPTAAGKKTEKEESTEVL 324
>gi|109637759 calpastatin isoform f [Homo sapiens]
Length = 750
Score = 27.7 bits (60), Expect = 2.1
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 16 PDLTNSSQLTPSEAEDCSSSDFSCVRPDS---QSEADAGTETI 55
P +S + P +A D SSDF+C P + ++E + TE +
Sbjct: 260 PPADSSKPIGPDDAIDALSSDFTCGSPTAAGKKTEKEESTEVL 302
>gi|27765085 calpastatin isoform b [Homo sapiens]
Length = 686
Score = 27.7 bits (60), Expect = 2.1
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 16 PDLTNSSQLTPSEAEDCSSSDFSCVRPDS---QSEADAGTETI 55
P +S + P +A D SSDF+C P + ++E + TE +
Sbjct: 196 PPADSSKPIGPDDAIDALSSDFTCGSPTAAGKKTEKEESTEVL 238
>gi|109637753 calpastatin isoform a [Homo sapiens]
Length = 791
Score = 27.7 bits (60), Expect = 2.1
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 16 PDLTNSSQLTPSEAEDCSSSDFSCVRPDS---QSEADAGTETI 55
P +S + P +A D SSDF+C P + ++E + TE +
Sbjct: 301 PPADSSKPIGPDDAIDALSSDFTCGSPTAAGKKTEKEESTEVL 343
>gi|110624787 5'-3' exoribonuclease 1 isoform b [Homo sapiens]
Length = 1693
Score = 27.7 bits (60), Expect = 2.1
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 11 VQCEKPDLTNSSQLTPSEAEDCSSSDFSCVRPDSQSEADAGTE--TISHREILP 62
VQ +PD +N +++P E+ S +P S + + ++ +ISH + P
Sbjct: 1618 VQTSQPDSSNIVKVSPRESSSASLKSSPIAQPASSFQVETASQGHSISHHKSTP 1671
>gi|110624792 5'-3' exoribonuclease 1 isoform a [Homo sapiens]
Length = 1706
Score = 27.7 bits (60), Expect = 2.1
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 11 VQCEKPDLTNSSQLTPSEAEDCSSSDFSCVRPDSQSEADAGTE--TISHREILP 62
VQ +PD +N +++P E+ S +P S + + ++ +ISH + P
Sbjct: 1631 VQTSQPDSSNIVKVSPRESSSASLKSSPIAQPASSFQVETASQGHSISHHKSTP 1684
>gi|239757993 PREDICTED: similar to inward rectifying K+ channel
negative regulator Kir2.2v isoform 1 [Homo sapiens]
Length = 432
Score = 27.3 bits (59), Expect = 2.7
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 12 QCEKPDLTNSSQLTPSEAEDCSSSDFSCVRPDSQSEADAGTETISHREILPE 63
+C DL + L P C ++ + + D + EAD + S ++P+
Sbjct: 355 RCSAKDLVENKFLLPRANSFCYKNELAFLSRDEEDEADGDQDGRSREGLIPQ 406
>gi|239757991 PREDICTED: similar to inward rectifying K+ channel
negative regulator Kir2.2v isoform 2 [Homo sapiens]
Length = 534
Score = 27.3 bits (59), Expect = 2.7
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 12 QCEKPDLTNSSQLTPSEAEDCSSSDFSCVRPDSQSEADAGTETISHREILPE 63
+C DL + L P C ++ + + D + EAD + S ++P+
Sbjct: 457 RCSAKDLVENKFLLPRANSFCYKNELAFLSRDEEDEADGDQDGRSREGLIPQ 508
>gi|239751249 PREDICTED: hypothetical protein XP_002347768 [Homo
sapiens]
Length = 432
Score = 27.3 bits (59), Expect = 2.7
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 12 QCEKPDLTNSSQLTPSEAEDCSSSDFSCVRPDSQSEADAGTETISHREILPE 63
+C DL + L P C ++ + + D + EAD + S ++P+
Sbjct: 355 RCSAKDLVENKFLLPRANSFCYKNELAFLSRDEEDEADGDQDGRSREGLIPQ 406
>gi|14277685 protocadherin gamma subfamily C, 5 isoform 2 precursor
[Homo sapiens]
Length = 878
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 5 PRKLILVQCEKPDLTNSSQ--LTPSEAEDCSSSDFSCVR--PDSQSEADAGTETISHREI 60
P +LI V+ E DL ++S TP S S S R DS + D GT T+S +
Sbjct: 113 PLELIRVEVEILDLNDNSPSFATPEREMRISESAASGARFPLDSAQDPDVGTNTVSFYTL 172
Query: 61 LP 62
P
Sbjct: 173 SP 174
>gi|11128023 protocadherin gamma subfamily C, 5 isoform 1 precursor
[Homo sapiens]
Length = 944
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 5 PRKLILVQCEKPDLTNSSQ--LTPSEAEDCSSSDFSCVR--PDSQSEADAGTETISHREI 60
P +LI V+ E DL ++S TP S S S R DS + D GT T+S +
Sbjct: 113 PLELIRVEVEILDLNDNSPSFATPEREMRISESAASGARFPLDSAQDPDVGTNTVSFYTL 172
Query: 61 LP 62
P
Sbjct: 173 SP 174
>gi|122056685 peptidylarginine deiminase type I [Homo sapiens]
Length = 663
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 7/43 (16%)
Query: 8 LILVQCEK-------PDLTNSSQLTPSEAEDCSSSDFSCVRPD 43
++LV C++ PDLT+S ++ ++ +D S SC PD
Sbjct: 149 ILLVNCDRDNHRSAEPDLTHSWLMSLADLQDMSPMLLSCNGPD 191
>gi|125988395 jumonji domain containing 6 isoform 1 [Homo sapiens]
Length = 414
Score = 26.6 bits (57), Expect = 4.6
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 1 MIHQPRKLILVQCEKPDLTNSSQLTPSEAEDCSSSDFSCVRPDSQSEADAGTE 53
++ Q + V + DL S+ + + D SSS S DS SE ++G+E
Sbjct: 315 ILKQEHPELAVLADSVDLQESTGIASDSSSDSSSSSSSS-SSDSDSECESGSE 366
>gi|125988389 jumonji domain containing 6 isoform 2 [Homo sapiens]
Length = 403
Score = 26.6 bits (57), Expect = 4.6
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 1 MIHQPRKLILVQCEKPDLTNSSQLTPSEAEDCSSSDFSCVRPDSQSEADAGTE 53
++ Q + V + DL S+ + + D SSS S DS SE ++G+E
Sbjct: 315 ILKQEHPELAVLADSVDLQESTGIASDSSSDSSSSSSSS-SSDSDSECESGSE 366
>gi|52218864 olfactory receptor, family 13, subfamily C, member 8
[Homo sapiens]
Length = 320
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 37 FSCVRPDSQSEADAGTETISHREILPEYGVINPAVH 72
F +P+S++ D+G E I I YGV+ P ++
Sbjct: 257 FMYAKPESKASVDSGNEDIIEALISLFYGVMTPMLN 292
>gi|75677612 leucine rich repeat containing 37, member A3 [Homo
sapiens]
Length = 1634
Score = 26.6 bits (57), Expect = 4.6
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 26 PSEAEDCSSSDFSCVRPDSQSEADAGTETISHREILPEYGVINPAVHYCTLP 77
PS++ + S F + D+ E+D T T+S+ ILP + +N V LP
Sbjct: 1092 PSDSSGINLSGFGSEQLDTNDESDV-TSTLSY--ILPYFSAVNLDVKSLLLP 1140
>gi|24497517 homeobox A5 [Homo sapiens]
Length = 270
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 15 KPDLTNSSQLTPSEAEDCSSSDFSCVRPDSQSEADAGTETISHRE 59
+PD S + PS D + + S + ADAG+ IS RE
Sbjct: 97 QPDPLPCSAVAPSPGSDSHHGGKNSLSNSSGASADAGSTHISSRE 141
>gi|221316624 dystonin isoform 4 [Homo sapiens]
Length = 5526
Score = 25.8 bits (55), Expect = 7.9
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 15 KPDLTNSSQLTPSEAEDCS 33
KP LTNS TP +A +CS
Sbjct: 5372 KPWLTNSKMSTPCKAAECS 5390
>gi|221316622 dystonin isoform 3 [Homo sapiens]
Length = 5537
Score = 25.8 bits (55), Expect = 7.9
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 15 KPDLTNSSQLTPSEAEDCS 33
KP LTNS TP +A +CS
Sbjct: 5383 KPWLTNSKMSTPCKAAECS 5401
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.129 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,310,530
Number of Sequences: 37866
Number of extensions: 122057
Number of successful extensions: 355
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 328
Number of HSP's gapped (non-prelim): 38
length of query: 77
length of database: 18,247,518
effective HSP length: 49
effective length of query: 28
effective length of database: 16,392,084
effective search space: 458978352
effective search space used: 458978352
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.